Wall clock time and date at job start Tue Mar 31 2020 13:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 C 1.50699 * 109.47227 * 179.97438 * 3 2 1 5 5 C 1.33822 * 124.52243 * 90.00410 * 4 3 2 6 6 C 1.37468 * 115.09949 * 180.25103 * 5 4 3 7 7 C 1.36651 * 113.30181 * 359.51195 * 6 5 4 8 8 C 1.46579 * 125.46209 * 180.19893 * 7 6 5 9 9 O 1.21697 * 119.99913 * 0.27401 * 8 7 6 10 10 N 1.34769 * 120.00167 * 180.27339 * 8 7 6 11 11 C 1.46502 * 120.00381 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47319 * 180.02562 * 11 10 8 13 13 H 1.09006 * 112.85266 * 314.66765 * 12 11 10 14 14 C 1.53780 * 113.61678 * 85.86209 * 12 11 10 15 15 C 1.53952 * 87.02074 * 139.95139 * 14 12 11 16 16 H 1.09006 * 113.61476 * 89.20188 * 15 14 12 17 17 N 1.46504 * 113.66614 * 220.06978 * 15 14 12 18 18 C 1.36937 * 119.99698 * 252.55712 * 17 15 14 19 19 H 1.08000 * 120.00455 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99662 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00208 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00019 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47460 * 89.99618 * 22 20 18 24 24 H 1.48502 * 109.47213 * 209.99959 * 22 20 18 25 25 H 1.48499 * 109.46751 * 329.99588 * 22 20 18 26 26 C 1.53779 * 113.61609 * 183.47312 * 12 11 10 27 27 S 1.70615 * 124.52678 * 269.97815 * 4 3 2 28 28 H 1.09003 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46926 * 299.99957 * 1 2 3 30 30 H 1.09000 * 109.47297 * 59.99851 * 1 2 3 31 31 H 1.09001 * 109.47326 * 240.00144 * 2 1 3 32 32 H 1.09000 * 109.47297 * 120.00149 * 2 1 3 33 33 H 1.09001 * 109.47166 * 60.00652 * 3 2 1 34 34 H 1.09000 * 109.47186 * 300.00217 * 3 2 1 35 35 H 1.08002 * 122.44530 * 359.97438 * 5 4 3 36 36 H 1.08003 * 123.34628 * 179.72645 * 6 5 4 37 37 H 0.96999 * 119.99792 * 0.02562 * 10 8 7 38 38 H 1.09003 * 109.46863 * 300.00248 * 11 10 8 39 39 H 1.09004 * 109.46782 * 59.99714 * 11 10 8 40 40 H 1.08996 * 113.61873 * 254.52939 * 14 12 11 41 41 H 1.09003 * 113.61432 * 25.43125 * 14 12 11 42 42 H 0.97001 * 120.00128 * 72.56584 * 17 15 14 43 43 H 0.96997 * 120.00123 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.61265 * 334.55969 * 26 12 11 45 45 H 1.08995 * 113.62285 * 105.46976 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3058 1.4425 -1.1016 6 6 5.6619 1.4371 -0.8760 7 6 5.9891 1.4434 0.4508 8 6 7.3519 1.4440 0.9905 9 8 8.3057 1.4436 0.2347 10 7 7.5487 1.4450 2.3237 11 6 8.9108 1.4462 2.8632 12 6 8.8538 1.4465 4.3921 13 1 8.1318 2.1604 4.7887 14 6 8.7303 0.0412 5.0043 15 6 9.7162 0.5142 6.0880 16 1 9.2310 0.9724 6.9498 17 7 10.7067 -0.4977 6.4640 18 6 10.6147 -1.1285 7.6760 19 1 9.8119 -0.8803 8.3545 20 6 11.5534 -2.0869 8.0325 21 7 12.5316 -2.3897 7.2055 22 14 11.4277 -2.9479 9.6855 23 1 10.5980 -4.1714 9.5446 24 1 12.7865 -3.3224 10.1532 25 1 10.7987 -2.0343 10.6728 26 6 10.2362 1.5331 5.0601 27 16 4.5134 1.4433 1.4067 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.8837 1.4420 -2.0957 36 1 6.3956 1.4320 -1.6685 37 1 6.7885 1.4449 2.9262 38 1 9.4383 0.5562 2.5198 39 1 9.4373 2.3362 2.5186 40 1 7.7344 -0.1826 5.3865 41 1 9.1277 -0.7490 4.3673 42 1 11.4276 -0.7208 5.8546 43 1 13.1873 -3.0597 7.4545 44 1 11.0462 1.1514 4.4385 45 1 10.4543 2.5118 5.4873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086097509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:22 Heat of formation + Delta-G solvation = 4.751090 kcal Electronic energy + Delta-G solvation = -23374.933246 eV Core-core repulsion = 19905.090457 eV Total energy + Delta-G solvation = -3469.842789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.92290 -38.67130 -38.07241 -35.29562 -34.70639 -33.30037 -30.92356 -30.21082 -28.15774 -26.47706 -25.09632 -24.22445 -23.72389 -21.91956 -21.68266 -21.05989 -19.58584 -18.99055 -18.09168 -17.04048 -16.60800 -15.92598 -15.52966 -15.38571 -15.26155 -14.70375 -14.64346 -14.21607 -13.99335 -13.62150 -13.49448 -13.38519 -13.02765 -12.94611 -12.62869 -12.21729 -11.95056 -11.87649 -11.82645 -11.64922 -11.41168 -11.32971 -11.23616 -11.08035 -10.84059 -10.54722 -10.32042 -10.15852 -9.97923 -9.83846 -9.50824 -9.18553 -8.91719 -8.88117 -8.85170 -6.96495 -5.78341 -3.07262 0.22009 1.13833 1.56409 2.11329 3.05110 3.10038 3.42589 3.47586 3.49473 4.18950 4.46358 4.55448 4.57994 4.64686 4.84057 4.96287 4.99037 5.00734 5.05684 5.20727 5.21899 5.28696 5.30702 5.46283 5.49498 5.58660 5.60318 5.71669 5.78769 5.80727 5.81740 5.88538 5.93934 6.06517 6.08724 6.22267 6.30111 6.35143 6.42014 6.58706 6.81931 7.10852 7.36216 7.68813 8.06027 8.40144 9.51159 10.09521 10.43695 11.43974 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.002118 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.851044 B =13213.828505 C =14327.495403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.052 4.052 4 C -0.192 4.192 5 C -0.153 4.153 6 C -0.054 4.054 7 C -0.265 4.265 8 C 0.587 3.413 9 O -0.532 6.532 10 N -0.720 5.720 11 C 0.133 3.867 12 C -0.128 4.128 13 H 0.088 0.912 14 C -0.162 4.162 15 C 0.166 3.834 16 H 0.076 0.924 17 N -0.712 5.712 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.141 4.141 27 S 0.201 5.799 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.397 0.603 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.081 0.919 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.569 10.449 -16.298 30.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.091 4.091 4 C -0.312 4.312 5 C -0.184 4.184 6 C -0.087 4.087 7 C -0.386 4.386 8 C 0.372 3.628 9 O -0.411 6.411 10 N -0.371 5.371 11 C 0.010 3.990 12 C -0.148 4.148 13 H 0.106 0.894 14 C -0.203 4.203 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.350 5.350 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.181 4.181 27 S 0.469 5.531 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.231 0.769 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.157 10.367 -15.039 29.494 hybrid contribution 0.085 -0.636 -0.710 0.957 sum -23.071 9.731 -15.750 29.581 Atomic orbital electron populations 1.21780 0.95220 1.02083 1.01957 1.21577 0.96041 0.95418 1.02931 1.20266 0.87018 0.98202 1.03614 1.24258 1.01161 1.08002 0.97779 1.19955 0.92565 1.06281 0.99585 1.20755 0.96175 0.96509 0.95231 1.24645 0.96935 1.18873 0.98129 1.16963 0.86711 0.76645 0.82437 1.90835 1.41812 1.50292 1.58111 1.45931 1.10084 1.75073 1.05985 1.21500 0.81775 1.02433 0.93310 1.22654 0.99956 0.99965 0.92204 0.89354 1.23988 1.01045 0.94595 1.00675 1.21547 0.90508 0.89530 0.93012 0.90651 1.42414 1.30145 1.43282 1.19185 1.19301 1.08813 1.15457 0.93956 0.91095 1.24780 0.97673 1.00031 0.98503 1.69662 1.16373 1.35793 1.36145 0.86185 0.76758 0.79638 0.83571 1.21709 1.21769 1.20743 1.23439 0.95202 1.00469 0.98996 1.83014 0.94272 1.68102 1.07665 0.92351 0.92541 0.92584 0.91434 0.91557 0.90533 0.89754 0.83901 0.82972 0.76885 0.90888 0.91434 0.92739 0.90298 0.78051 0.93448 0.90043 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 3 C -0.05 -0.28 5.65 -27.88 -0.16 -0.44 16 4 C -0.19 -1.47 5.53 -35.86 -0.20 -1.67 16 5 C -0.15 -1.24 10.00 -41.41 -0.41 -1.66 16 6 C -0.05 -0.55 10.01 -40.44 -0.40 -0.95 16 7 C -0.27 -3.01 6.45 -36.79 -0.24 -3.24 16 8 C 0.59 8.19 7.78 -12.90 -0.10 8.08 16 9 O -0.53 -9.30 16.84 5.19 0.09 -9.21 16 10 N -0.72 -8.89 5.55 -61.65 -0.34 -9.23 16 11 C 0.13 1.79 5.50 -4.04 -0.02 1.77 16 12 C -0.13 -1.73 3.75 -89.81 -0.34 -2.06 16 13 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.16 -2.67 7.45 -25.83 -0.19 -2.87 16 15 C 0.17 3.20 4.48 -67.03 -0.30 2.90 16 16 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 17 N -0.71 -17.75 5.40 -52.54 -0.28 -18.04 16 18 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.14 -2.24 7.40 -25.92 -0.19 -2.43 16 27 S 0.20 1.69 22.10 -107.50 -2.38 -0.68 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.40 4.05 7.59 -40.82 -0.31 3.74 16 38 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.44 7.92 -51.93 -0.41 1.03 16 42 H 0.39 10.25 7.92 -40.82 -0.32 9.92 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -32.34 388.41 -11.29 -43.63 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.34 Total: 8.93 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.59 Total: -11.06 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.10 Total: -54.75 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.34 -11.29 -43.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086097509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.378 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds