Wall clock time and date at job start Tue Mar 31 2020 13:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 C 1.50699 * 109.47227 * 179.97438 * 3 2 1 5 5 C 1.33822 * 124.52243 * 90.00410 * 4 3 2 6 6 C 1.37468 * 115.09949 * 180.25103 * 5 4 3 7 7 C 1.36651 * 113.30181 * 359.51195 * 6 5 4 8 8 C 1.46579 * 125.46209 * 180.19893 * 7 6 5 9 9 O 1.21697 * 119.99913 * 0.27401 * 8 7 6 10 10 N 1.34769 * 120.00167 * 180.27339 * 8 7 6 11 11 C 1.46502 * 120.00381 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47319 * 180.02562 * 11 10 8 13 13 H 1.09006 * 112.85266 * 314.66765 * 12 11 10 14 14 C 1.53780 * 113.61678 * 85.86209 * 12 11 10 15 15 C 1.53952 * 87.02074 * 139.95139 * 14 12 11 16 16 H 1.09006 * 113.61476 * 89.20188 * 15 14 12 17 17 N 1.46504 * 113.66614 * 220.06978 * 15 14 12 18 18 C 1.36937 * 119.99698 * 252.55712 * 17 15 14 19 19 H 1.08000 * 120.00455 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99662 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00208 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00019 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47460 * 89.99618 * 22 20 18 24 24 H 1.48502 * 109.47213 * 209.99959 * 22 20 18 25 25 H 1.48499 * 109.46751 * 329.99588 * 22 20 18 26 26 C 1.53779 * 113.61609 * 183.47312 * 12 11 10 27 27 S 1.70615 * 124.52678 * 269.97815 * 4 3 2 28 28 H 1.09003 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46926 * 299.99957 * 1 2 3 30 30 H 1.09000 * 109.47297 * 59.99851 * 1 2 3 31 31 H 1.09001 * 109.47326 * 240.00144 * 2 1 3 32 32 H 1.09000 * 109.47297 * 120.00149 * 2 1 3 33 33 H 1.09001 * 109.47166 * 60.00652 * 3 2 1 34 34 H 1.09000 * 109.47186 * 300.00217 * 3 2 1 35 35 H 1.08002 * 122.44530 * 359.97438 * 5 4 3 36 36 H 1.08003 * 123.34628 * 179.72645 * 6 5 4 37 37 H 0.96999 * 119.99792 * 0.02562 * 10 8 7 38 38 H 1.09003 * 109.46863 * 300.00248 * 11 10 8 39 39 H 1.09004 * 109.46782 * 59.99714 * 11 10 8 40 40 H 1.08996 * 113.61873 * 254.52939 * 14 12 11 41 41 H 1.09003 * 113.61432 * 25.43125 * 14 12 11 42 42 H 0.97001 * 120.00128 * 72.56584 * 17 15 14 43 43 H 0.96997 * 120.00123 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.61265 * 334.55969 * 26 12 11 45 45 H 1.08995 * 113.62285 * 105.46976 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3058 1.4425 -1.1016 6 6 5.6619 1.4371 -0.8760 7 6 5.9891 1.4434 0.4508 8 6 7.3519 1.4440 0.9905 9 8 8.3057 1.4436 0.2347 10 7 7.5487 1.4450 2.3237 11 6 8.9108 1.4462 2.8632 12 6 8.8538 1.4465 4.3921 13 1 8.1318 2.1604 4.7887 14 6 8.7303 0.0412 5.0043 15 6 9.7162 0.5142 6.0880 16 1 9.2310 0.9724 6.9498 17 7 10.7067 -0.4977 6.4640 18 6 10.6147 -1.1285 7.6760 19 1 9.8119 -0.8803 8.3545 20 6 11.5534 -2.0869 8.0325 21 7 12.5316 -2.3897 7.2055 22 14 11.4277 -2.9479 9.6855 23 1 10.5980 -4.1714 9.5446 24 1 12.7865 -3.3224 10.1532 25 1 10.7987 -2.0343 10.6728 26 6 10.2362 1.5331 5.0601 27 16 4.5134 1.4433 1.4067 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.8837 1.4420 -2.0957 36 1 6.3956 1.4320 -1.6685 37 1 6.7885 1.4449 2.9262 38 1 9.4383 0.5562 2.5198 39 1 9.4373 2.3362 2.5186 40 1 7.7344 -0.1826 5.3865 41 1 9.1277 -0.7490 4.3673 42 1 11.4276 -0.7208 5.8546 43 1 13.1873 -3.0597 7.4545 44 1 11.0462 1.1514 4.4385 45 1 10.4543 2.5118 5.4873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086097509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:21 Heat of formation + Delta-G solvation = -14.623842 kcal Electronic energy + Delta-G solvation = -23375.773406 eV Core-core repulsion = 19905.090457 eV Total energy + Delta-G solvation = -3470.682949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01131 -39.88274 -38.90249 -36.11686 -35.76566 -35.05616 -32.28865 -31.39677 -29.22076 -27.38806 -26.46778 -25.79714 -24.67674 -22.81221 -22.33939 -22.27769 -20.77156 -20.11649 -19.12421 -18.82939 -17.50639 -16.86977 -16.74037 -16.57395 -16.13097 -15.91895 -15.76791 -15.31238 -15.07035 -14.78445 -14.71649 -14.37657 -14.16293 -13.58613 -13.42614 -13.33175 -13.24100 -13.03960 -12.93437 -12.74166 -12.64391 -12.36915 -12.20928 -12.08008 -12.07184 -11.93260 -11.63494 -11.56768 -11.51660 -11.23352 -11.03030 -10.80983 -10.27179 -9.64889 -9.54493 -8.97434 -7.94020 -5.22443 -0.54271 0.43521 0.87537 1.35808 1.47495 1.49292 1.57677 2.04200 2.12986 2.57117 3.37552 3.63194 3.68216 3.72044 3.80768 3.93460 4.06398 4.16304 4.24453 4.28665 4.34405 4.39610 4.42559 4.53342 4.61734 4.71456 4.73256 4.85186 4.96088 4.96431 4.98046 5.02643 5.03820 5.15380 5.19145 5.23677 5.28397 5.29214 5.39835 5.41490 5.45953 5.52541 5.71912 6.28125 6.37290 7.03806 7.33561 8.11995 8.33694 9.29443 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.002118 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.851044 B =13213.828505 C =14327.495403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.052 4.052 4 C -0.181 4.181 5 C -0.161 4.161 6 C -0.054 4.054 7 C -0.304 4.304 8 C 0.584 3.416 9 O -0.579 6.579 10 N -0.711 5.711 11 C 0.138 3.862 12 C -0.097 4.097 13 H 0.122 0.878 14 C -0.155 4.155 15 C 0.144 3.856 16 H 0.083 0.917 17 N -0.730 5.730 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.082 4.082 21 N -0.972 5.972 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.298 1.298 25 H -0.266 1.266 26 C -0.135 4.135 27 S 0.234 5.766 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.410 0.590 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.850 11.746 -15.951 33.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.091 4.091 4 C -0.302 4.302 5 C -0.191 4.191 6 C -0.088 4.088 7 C -0.424 4.424 8 C 0.372 3.628 9 O -0.461 6.461 10 N -0.362 5.362 11 C 0.014 3.986 12 C -0.116 4.116 13 H 0.140 0.860 14 C -0.196 4.196 15 C 0.035 3.965 16 H 0.101 0.899 17 N -0.367 5.367 18 C -0.373 4.373 19 H 0.098 0.902 20 C -0.274 4.274 21 N -0.623 5.623 22 Si 0.803 3.197 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.191 1.191 26 C -0.174 4.174 27 S 0.502 5.498 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.246 0.754 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.517 11.709 -14.666 32.486 hybrid contribution 0.969 -0.988 -0.876 1.638 sum -25.548 10.720 -15.542 31.768 Atomic orbital electron populations 1.21768 0.94367 1.02235 1.02529 1.21564 0.96765 0.95171 1.02412 1.20393 0.85182 0.98520 1.04971 1.24659 1.02364 1.05842 0.97298 1.20111 0.91540 1.06503 1.00929 1.20934 0.97267 0.95759 0.94873 1.24489 0.96865 1.21829 0.99213 1.17346 0.87423 0.75616 0.82415 1.90800 1.43559 1.52605 1.59135 1.45793 1.09990 1.74480 1.05898 1.21323 0.82401 1.01580 0.93269 1.22492 0.98974 0.98380 0.91802 0.85985 1.23774 1.00641 0.95810 0.99367 1.21981 0.90541 0.89566 0.94425 0.89931 1.42639 1.31108 1.44615 1.18342 1.19741 1.08192 1.14641 0.94737 0.90202 1.25620 0.97955 1.01612 1.02165 1.69829 1.17501 1.36855 1.38124 0.85128 0.76247 0.78553 0.79774 1.21567 1.22478 1.19104 1.23316 0.96156 1.00126 0.97839 1.82820 0.92376 1.67329 1.07236 0.92469 0.92152 0.91841 0.91770 0.92348 0.89473 0.88135 0.81704 0.83612 0.75407 0.93164 0.91104 0.91271 0.92657 0.79671 0.94153 0.91430 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 71.98 0.71 -0.24 16 2 C -0.12 -1.00 5.92 30.59 0.18 -0.82 16 3 C -0.05 -0.40 5.65 29.85 0.17 -0.23 16 4 C -0.18 -2.32 5.53 24.68 0.14 -2.18 16 5 C -0.16 -2.31 10.00 21.08 0.21 -2.09 16 6 C -0.05 -1.08 10.01 21.72 0.22 -0.86 16 7 C -0.30 -6.71 6.45 24.08 0.16 -6.55 16 8 C 0.58 16.37 7.78 86.42 0.67 17.04 16 9 O -0.58 -20.95 16.84 -4.34 -0.07 -21.02 16 10 N -0.71 -16.88 5.55 -467.19 -2.59 -19.48 16 11 C 0.14 3.63 5.50 86.38 0.47 4.10 16 12 C -0.10 -2.42 3.75 -10.27 -0.04 -2.46 16 13 H 0.12 2.32 8.14 -2.38 -0.02 2.31 16 14 C -0.16 -4.96 7.45 31.18 0.23 -4.73 16 15 C 0.14 5.43 4.48 45.58 0.20 5.63 16 16 H 0.08 2.98 8.10 -2.38 -0.02 2.96 16 17 N -0.73 -36.82 5.40 -320.15 -1.73 -38.55 16 18 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 19 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 21 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 22 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 C -0.13 -4.12 7.40 31.12 0.23 -3.89 16 27 S 0.23 3.45 22.10 -56.49 -1.25 2.20 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 35 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.41 7.52 7.59 -92.71 -0.70 6.81 16 38 H 0.05 1.57 7.87 -2.39 -0.02 1.55 16 39 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 2.05 7.92 -2.39 -0.02 2.03 16 42 H 0.37 20.44 7.92 -92.71 -0.73 19.71 16 43 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.67 388.41 1.08 -70.59 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.45 Total: 32.17 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.86 Total: -14.05 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.04 Total: -118.17 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.07 Total: -21.02 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.25 Total: 2.20 kcal Total: -71.67 1.08 -70.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086097509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.963 kcal (2) G-P(sol) polarization free energy of solvation -71.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds