Wall clock time and date at job start Tue Mar 31 2020 13:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47233 * 2 1 4 4 C 1.37475 * 122.45184 * 265.02482 * 3 2 1 5 5 C 1.36646 * 113.29989 * 179.73241 * 4 3 2 6 6 C 1.46576 * 125.46009 * 180.02562 * 5 4 3 7 7 O 1.21709 * 119.99710 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00266 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00114 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47122 * 180.02562 * 9 8 6 11 11 H 1.08999 * 112.84657 * 45.33743 * 10 9 8 12 12 C 1.53774 * 113.61238 * 176.52938 * 10 9 8 13 13 C 1.53790 * 87.07960 * 139.98100 * 12 10 9 14 14 H 1.09000 * 113.60821 * 89.11504 * 13 12 10 15 15 N 1.46498 * 113.61483 * 219.93458 * 13 12 10 16 16 C 1.36937 * 119.99858 * 205.00169 * 15 13 12 17 17 H 1.07992 * 119.99983 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99559 * 179.97438 * 16 15 13 19 19 N 1.31609 * 120.00497 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99671 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47227 * 59.99928 * 20 18 16 22 22 H 1.48501 * 109.47188 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47079 * 300.00445 * 20 18 16 24 24 C 1.53783 * 113.61291 * 274.14020 * 10 9 8 25 25 S 1.75835 * 109.08118 * 359.97438 * 5 4 3 26 26 C 1.33823 * 122.45055 * 84.73097 * 3 2 1 27 27 C 1.50702 * 124.51697 * 0.29363 * 26 3 2 28 28 H 1.09005 * 109.47200 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47386 * 300.00065 * 1 2 3 30 30 H 1.09002 * 109.47196 * 60.00189 * 1 2 3 31 31 H 1.08997 * 109.47386 * 239.99935 * 2 1 3 32 32 H 1.08997 * 109.46775 * 119.99672 * 2 1 3 33 33 H 1.07999 * 123.34447 * 359.68856 * 4 3 2 34 34 H 0.97000 * 119.99880 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46908 * 300.00400 * 9 8 6 36 36 H 1.09004 * 109.46976 * 60.00275 * 9 8 6 37 37 H 1.09001 * 113.61753 * 254.52886 * 12 10 9 38 38 H 1.09001 * 113.61810 * 25.35300 * 12 10 9 39 39 H 0.97001 * 119.99690 * 24.99723 * 15 13 12 40 40 H 0.96998 * 120.00400 * 180.02562 * 19 18 16 41 41 H 1.08996 * 113.61210 * 334.56140 * 24 10 9 42 42 H 1.08997 * 113.61553 * 105.47191 * 24 10 9 43 43 H 1.08997 * 109.46955 * 90.00037 * 27 26 3 44 44 H 1.09005 * 109.46651 * 209.99637 * 27 26 3 45 45 H 1.08998 * 109.47220 * 329.99544 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3731 2.0827 -1.1557 5 6 2.7995 3.3628 -0.9397 6 6 3.2262 4.3038 -1.9794 7 8 3.2184 3.9640 -3.1480 8 7 3.6271 5.5454 -1.6413 9 6 4.0540 6.4857 -2.6804 10 6 4.4560 7.8127 -2.0335 11 1 5.0863 7.6810 -1.1541 12 6 5.0020 8.8451 -3.0338 13 6 4.2148 9.9067 -2.2475 14 1 4.7785 10.3485 -1.4258 15 7 3.5699 10.9094 -3.0989 16 6 3.2858 12.1520 -2.5985 17 1 3.5368 12.3927 -1.5761 18 6 2.6753 13.1021 -3.4056 19 7 2.3690 12.8086 -4.6514 20 14 2.2870 14.7970 -2.7228 21 1 3.5445 15.4538 -2.2837 22 1 1.6405 15.6192 -3.7769 23 1 1.3670 14.6652 -1.5645 24 6 3.2743 8.7703 -1.8067 25 16 2.7531 3.7008 0.7852 26 6 2.1739 2.1323 1.1245 27 6 1.8633 1.6168 2.5061 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3107 1.6352 -2.1366 34 1 3.6329 5.8164 -0.7099 35 1 4.9067 6.0708 -3.2178 36 1 3.2328 6.6548 -3.3771 37 1 6.0830 8.9750 -2.9809 38 1 4.6427 8.6988 -4.0524 39 1 3.3443 10.6930 -4.0172 40 1 1.9427 13.4727 -5.2154 41 1 2.4406 8.6043 -2.4890 42 1 2.9624 8.8399 -0.7646 43 1 2.7549 1.1555 2.9307 44 1 1.5457 2.4448 3.1399 45 1 1.0647 0.8774 2.4469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086267440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:53 Heat of formation + Delta-G solvation = 5.958099 kcal Electronic energy + Delta-G solvation = -23624.715726 eV Core-core repulsion = 20154.925277 eV Total energy + Delta-G solvation = -3469.790449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99002 -38.99577 -38.27555 -34.71686 -33.37407 -33.17488 -31.90817 -30.32681 -28.35983 -26.60285 -25.09470 -24.31250 -24.04598 -23.07607 -21.07578 -20.67323 -19.22100 -18.83399 -18.07813 -17.04215 -16.71269 -15.86676 -15.50216 -15.26282 -14.79429 -14.65601 -14.48043 -14.44942 -13.80544 -13.56447 -13.52935 -13.35379 -13.08492 -12.91997 -12.75668 -12.41737 -12.01802 -11.90112 -11.82834 -11.75591 -11.40528 -11.36965 -11.23174 -11.01034 -10.82751 -10.54760 -10.31697 -10.18099 -9.97657 -9.83407 -9.50414 -9.15751 -8.89129 -8.86087 -8.69433 -6.96412 -5.77965 -3.06942 0.23538 1.15920 1.57312 2.06123 3.04745 3.09886 3.43214 3.47590 3.48825 4.36936 4.48735 4.58283 4.65720 4.75645 4.86473 4.96557 4.97466 5.00888 5.07624 5.20739 5.21934 5.26525 5.41810 5.46443 5.48837 5.51484 5.53891 5.66639 5.80960 5.83902 5.85519 5.92644 6.02224 6.08938 6.14047 6.22595 6.30352 6.35369 6.42298 6.58979 6.82237 7.11054 7.36662 7.68613 8.06488 8.40521 9.51438 10.09811 10.44024 11.44303 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.002061 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.478746 B =13584.620980 C =13934.946845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.120 4.120 4 C -0.048 4.048 5 C -0.264 4.264 6 C 0.587 3.413 7 O -0.532 6.532 8 N -0.720 5.720 9 C 0.133 3.867 10 C -0.129 4.129 11 H 0.088 0.912 12 C -0.141 4.141 13 C 0.166 3.834 14 H 0.075 0.925 15 N -0.712 5.712 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.162 4.162 25 S 0.198 5.802 26 C -0.197 4.197 27 C -0.086 4.086 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.152 0.848 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 -26.927 14.562 30.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.133 4.133 4 C -0.081 4.081 5 C -0.384 4.384 6 C 0.373 3.627 7 O -0.411 6.411 8 N -0.371 5.371 9 C 0.010 3.990 10 C -0.148 4.148 11 H 0.106 0.894 12 C -0.181 4.181 13 C 0.054 3.946 14 H 0.093 0.907 15 N -0.350 5.350 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.203 4.203 25 S 0.467 5.533 26 C -0.316 4.316 27 C -0.145 4.145 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.169 0.831 34 H 0.231 0.769 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.015 -25.622 14.676 29.545 hybrid contribution -0.715 -0.263 -0.381 0.852 sum 0.300 -25.885 14.295 29.571 Atomic orbital electron populations 1.21762 0.94709 1.01729 1.02389 1.20239 0.96035 0.91079 1.02907 1.18653 1.04775 0.98540 0.91311 1.20609 0.95810 0.91849 0.99803 1.24546 1.16461 1.00280 0.97105 1.16956 0.77270 0.81216 0.87269 1.90837 1.54499 1.77261 1.18462 1.45928 1.67156 1.12803 1.11182 1.21499 0.99925 0.87788 0.89784 1.22655 1.00202 0.92147 0.99781 0.89356 1.23440 0.99885 0.96019 0.98761 1.21542 0.92201 0.87361 0.93470 0.90668 1.42402 1.69869 1.10435 1.12297 1.19255 1.32743 0.89292 0.96328 0.91148 1.24775 1.01620 0.98562 0.95984 1.69645 1.47381 1.34635 1.06330 0.86262 0.78010 0.84211 0.77653 1.21236 1.21687 1.21254 1.23989 0.97275 0.98136 1.00913 1.82998 1.60700 1.10711 0.98888 1.24015 1.07863 0.99346 1.00403 1.20416 1.02572 1.01567 0.89915 0.92288 0.92583 0.92350 0.90802 0.90966 0.83065 0.76881 0.91449 0.90890 0.91935 0.90047 0.78050 0.93387 0.90305 0.92740 0.90437 0.91044 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.83 37.16 0.37 -0.51 16 2 C -0.06 -0.40 5.54 -27.88 -0.15 -0.55 16 3 C -0.12 -1.03 5.04 -106.45 -0.54 -1.57 16 4 C -0.05 -0.51 9.78 -40.43 -0.40 -0.90 16 5 C -0.26 -3.05 6.45 -36.80 -0.24 -3.29 16 6 C 0.59 8.27 7.78 -12.90 -0.10 8.17 16 7 O -0.53 -9.36 16.84 5.18 0.09 -9.27 16 8 N -0.72 -8.97 5.55 -61.65 -0.34 -9.32 16 9 C 0.13 1.80 5.50 -4.04 -0.02 1.78 16 10 C -0.13 -1.74 3.75 -89.81 -0.34 -2.07 16 11 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 12 C -0.14 -2.25 7.40 -25.92 -0.19 -2.44 16 13 C 0.17 3.21 4.48 -67.02 -0.30 2.91 16 14 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 15 N -0.71 -17.79 5.41 -52.55 -0.28 -18.07 16 16 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.16 -2.69 7.45 -25.83 -0.19 -2.88 16 25 S 0.20 1.71 22.10 -107.50 -2.38 -0.67 16 26 C -0.20 -1.56 6.28 -35.86 -0.23 -1.79 16 27 C -0.09 -0.45 9.71 36.01 0.35 -0.10 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.32 7.23 -51.93 -0.38 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.07 0.37 7.46 -51.93 -0.39 -0.02 16 33 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.40 4.10 7.59 -40.82 -0.31 3.79 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.12 7.88 -51.93 -0.41 0.71 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 39 H 0.39 10.27 7.93 -40.82 -0.32 9.94 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.08 1.45 7.92 -51.93 -0.41 1.04 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.35 6.38 -51.93 -0.33 0.02 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -32.52 384.27 -10.81 -43.32 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.16 Total: 9.05 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.22 Total: -10.64 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.10 Total: -54.91 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.38 Total: -0.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.52 -10.81 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086267440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.280 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds