Wall clock time and date at job start Tue Mar 31 2020 13:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47233 * 2 1 4 4 C 1.37475 * 122.45184 * 265.02482 * 3 2 1 5 5 C 1.36646 * 113.29989 * 179.73241 * 4 3 2 6 6 C 1.46576 * 125.46009 * 180.02562 * 5 4 3 7 7 O 1.21709 * 119.99710 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00266 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00114 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47122 * 180.02562 * 9 8 6 11 11 H 1.08999 * 112.84657 * 45.33743 * 10 9 8 12 12 C 1.53774 * 113.61238 * 176.52938 * 10 9 8 13 13 C 1.53790 * 87.07960 * 139.98100 * 12 10 9 14 14 H 1.09000 * 113.60821 * 89.11504 * 13 12 10 15 15 N 1.46498 * 113.61483 * 219.93458 * 13 12 10 16 16 C 1.36937 * 119.99858 * 205.00169 * 15 13 12 17 17 H 1.07992 * 119.99983 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99559 * 179.97438 * 16 15 13 19 19 N 1.31609 * 120.00497 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99671 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47227 * 59.99928 * 20 18 16 22 22 H 1.48501 * 109.47188 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47079 * 300.00445 * 20 18 16 24 24 C 1.53783 * 113.61291 * 274.14020 * 10 9 8 25 25 S 1.75835 * 109.08118 * 359.97438 * 5 4 3 26 26 C 1.33823 * 122.45055 * 84.73097 * 3 2 1 27 27 C 1.50702 * 124.51697 * 0.29363 * 26 3 2 28 28 H 1.09005 * 109.47200 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47386 * 300.00065 * 1 2 3 30 30 H 1.09002 * 109.47196 * 60.00189 * 1 2 3 31 31 H 1.08997 * 109.47386 * 239.99935 * 2 1 3 32 32 H 1.08997 * 109.46775 * 119.99672 * 2 1 3 33 33 H 1.07999 * 123.34447 * 359.68856 * 4 3 2 34 34 H 0.97000 * 119.99880 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46908 * 300.00400 * 9 8 6 36 36 H 1.09004 * 109.46976 * 60.00275 * 9 8 6 37 37 H 1.09001 * 113.61753 * 254.52886 * 12 10 9 38 38 H 1.09001 * 113.61810 * 25.35300 * 12 10 9 39 39 H 0.97001 * 119.99690 * 24.99723 * 15 13 12 40 40 H 0.96998 * 120.00400 * 180.02562 * 19 18 16 41 41 H 1.08996 * 113.61210 * 334.56140 * 24 10 9 42 42 H 1.08997 * 113.61553 * 105.47191 * 24 10 9 43 43 H 1.08997 * 109.46955 * 90.00037 * 27 26 3 44 44 H 1.09005 * 109.46651 * 209.99637 * 27 26 3 45 45 H 1.08998 * 109.47220 * 329.99544 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3731 2.0827 -1.1557 5 6 2.7995 3.3628 -0.9397 6 6 3.2262 4.3038 -1.9794 7 8 3.2184 3.9640 -3.1480 8 7 3.6271 5.5454 -1.6413 9 6 4.0540 6.4857 -2.6804 10 6 4.4560 7.8127 -2.0335 11 1 5.0863 7.6810 -1.1541 12 6 5.0020 8.8451 -3.0338 13 6 4.2148 9.9067 -2.2475 14 1 4.7785 10.3485 -1.4258 15 7 3.5699 10.9094 -3.0989 16 6 3.2858 12.1520 -2.5985 17 1 3.5368 12.3927 -1.5761 18 6 2.6753 13.1021 -3.4056 19 7 2.3690 12.8086 -4.6514 20 14 2.2870 14.7970 -2.7228 21 1 3.5445 15.4538 -2.2837 22 1 1.6405 15.6192 -3.7769 23 1 1.3670 14.6652 -1.5645 24 6 3.2743 8.7703 -1.8067 25 16 2.7531 3.7008 0.7852 26 6 2.1739 2.1323 1.1245 27 6 1.8633 1.6168 2.5061 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3107 1.6352 -2.1366 34 1 3.6329 5.8164 -0.7099 35 1 4.9067 6.0708 -3.2178 36 1 3.2328 6.6548 -3.3771 37 1 6.0830 8.9750 -2.9809 38 1 4.6427 8.6988 -4.0524 39 1 3.3443 10.6930 -4.0172 40 1 1.9427 13.4727 -5.2154 41 1 2.4406 8.6043 -2.4890 42 1 2.9624 8.8399 -0.7646 43 1 2.7549 1.1555 2.9307 44 1 1.5457 2.4448 3.1399 45 1 1.0647 0.8774 2.4469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086267440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:52 Heat of formation + Delta-G solvation = -13.925620 kcal Electronic energy + Delta-G solvation = -23625.577949 eV Core-core repulsion = 20154.925277 eV Total energy + Delta-G solvation = -3470.652672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05134 -40.00230 -39.37052 -36.11192 -35.06497 -33.90111 -32.44944 -32.17406 -29.48171 -27.54959 -26.47297 -25.82757 -24.85608 -24.04529 -22.43486 -21.66394 -20.54419 -19.65656 -19.11935 -18.83633 -17.62466 -16.87822 -16.70575 -16.59717 -16.11693 -15.79414 -15.41276 -15.14720 -15.13572 -14.96349 -14.50812 -14.41013 -14.07095 -13.60206 -13.46337 -13.27545 -13.24802 -13.04651 -12.94105 -12.90573 -12.65226 -12.58540 -12.41790 -12.24804 -12.09035 -11.85874 -11.65681 -11.58458 -11.57017 -11.23473 -11.03462 -10.80438 -10.26939 -9.62438 -9.36602 -8.97695 -7.93934 -5.22477 -0.54520 0.44086 0.86691 1.29688 1.47301 1.50501 1.56567 2.02429 2.10330 2.57163 3.37371 3.62438 3.71431 3.76453 3.82550 3.91874 4.07851 4.15188 4.24091 4.34002 4.38266 4.39861 4.52210 4.52770 4.62064 4.70096 4.72150 4.74058 4.93218 4.96606 4.97436 4.97879 5.02425 5.10018 5.15354 5.18540 5.27576 5.30650 5.39371 5.45008 5.52167 5.53348 5.71406 6.28000 6.36332 7.02800 7.33463 8.11885 8.33687 9.29348 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.002061 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.478746 B =13584.620980 C =13934.946845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.050 4.050 5 C -0.302 4.302 6 C 0.585 3.415 7 O -0.579 6.579 8 N -0.710 5.710 9 C 0.138 3.862 10 C -0.098 4.098 11 H 0.122 0.878 12 C -0.135 4.135 13 C 0.145 3.855 14 H 0.083 0.917 15 N -0.730 5.730 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.081 4.081 19 N -0.972 5.972 20 Si 0.974 3.026 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.277 1.277 24 C -0.155 4.155 25 S 0.232 5.768 26 C -0.187 4.187 27 C -0.089 4.089 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.410 0.590 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -28.187 18.031 33.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.084 4.084 5 C -0.422 4.422 6 C 0.373 3.627 7 O -0.461 6.461 8 N -0.361 5.361 9 C 0.015 3.985 10 C -0.117 4.117 11 H 0.140 0.860 12 C -0.174 4.174 13 C 0.035 3.965 14 H 0.101 0.899 15 N -0.367 5.367 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.803 3.197 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.204 1.204 24 C -0.196 4.196 25 S 0.502 5.498 26 C -0.307 4.307 27 C -0.148 4.148 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.159 0.841 34 H 0.246 0.754 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.585 -26.904 18.229 32.537 hybrid contribution -0.867 0.019 -1.356 1.610 sum 0.717 -26.886 16.873 31.750 Atomic orbital electron populations 1.21754 0.94409 1.02483 1.01782 1.20294 0.96210 0.89772 1.03805 1.18811 1.05307 0.99735 0.90682 1.20762 0.95417 0.91882 1.00363 1.24383 1.18919 1.00342 0.98557 1.17330 0.76484 0.81677 0.87256 1.90801 1.56617 1.78186 1.20509 1.45786 1.66575 1.12201 1.11563 1.21324 0.99253 0.88114 0.89855 1.22492 0.98440 0.90810 0.99910 0.85983 1.23317 1.00596 0.95269 0.98259 1.21974 0.93446 0.87261 0.93798 0.89936 1.42626 1.70731 1.10955 1.12378 1.19704 1.31005 0.90230 0.96544 0.90222 1.25621 1.02727 1.02502 0.96453 1.69817 1.49201 1.35559 1.07723 0.85196 0.78001 0.79676 0.76802 1.20187 1.22487 1.20354 1.23775 0.97115 0.97680 1.01033 1.82777 1.60061 1.11005 0.95942 1.24494 1.05762 0.98768 1.01641 1.20589 1.03747 1.02325 0.88099 0.90877 0.92207 0.93920 0.90839 0.89165 0.84088 0.75397 0.91123 0.93168 0.90066 0.91427 0.79675 0.94128 0.92670 0.91272 0.88860 0.90027 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.83 71.98 0.71 -0.77 16 2 C -0.06 -0.66 5.54 29.85 0.17 -0.50 16 3 C -0.13 -2.10 5.04 -21.05 -0.11 -2.21 16 4 C -0.05 -1.06 9.78 21.72 0.21 -0.85 16 5 C -0.30 -6.91 6.45 24.07 0.16 -6.75 16 6 C 0.58 16.69 7.78 86.42 0.67 17.36 16 7 O -0.58 -21.26 16.84 -4.38 -0.07 -21.33 16 8 N -0.71 -17.13 5.55 -467.16 -2.59 -19.73 16 9 C 0.14 3.67 5.50 86.38 0.47 4.15 16 10 C -0.10 -2.44 3.75 -10.27 -0.04 -2.48 16 11 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 12 C -0.13 -4.14 7.40 31.12 0.23 -3.91 16 13 C 0.14 5.46 4.48 45.58 0.20 5.67 16 14 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 15 N -0.73 -36.92 5.41 -320.16 -1.73 -38.66 16 16 C -0.24 -13.48 9.97 84.03 0.84 -12.64 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 19 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 20 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C -0.16 -5.00 7.45 31.18 0.23 -4.76 16 25 S 0.23 3.54 22.10 -56.49 -1.25 2.29 16 26 C -0.19 -2.50 6.28 24.68 0.15 -2.35 16 27 C -0.09 -0.60 9.71 71.24 0.69 0.09 16 28 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.55 7.23 -2.39 -0.02 0.53 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.09 0.66 7.46 -2.39 -0.02 0.64 16 33 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.41 7.66 7.59 -92.71 -0.70 6.95 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.58 7.88 -2.38 -0.02 1.57 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.07 2.28 8.08 -2.39 -0.02 2.27 16 39 H 0.37 20.49 7.93 -92.71 -0.73 19.76 16 40 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 45 H 0.09 0.45 6.38 -2.39 -0.02 0.44 16 Total: -1.00 -72.43 384.27 1.29 -71.14 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.44 Total: 32.37 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 5.06 Total: -14.19 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -4.04 Total: -118.60 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.07 Total: -21.33 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.25 Total: 2.29 kcal Total: -72.43 1.29 -71.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086267440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.217 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds