Wall clock time and date at job start Tue Mar 31 2020 13:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 C 1.50699 * 109.47224 * 239.99446 * 2 1 3 5 5 C 1.37475 * 123.34579 * 54.70119 * 4 2 1 6 6 C 1.33819 * 115.09419 * 179.76277 * 5 4 2 7 7 S 1.70613 * 110.96020 * 0.48751 * 6 5 4 8 8 C 1.36647 * 123.35433 * 234.98769 * 4 2 1 9 9 C 1.46582 * 125.45549 * 0.03008 * 8 4 2 10 10 O 1.21706 * 120.00291 * 5.63566 * 9 8 4 11 11 N 1.34780 * 119.99798 * 185.63502 * 9 8 4 12 12 C 1.46502 * 120.00007 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47199 * 179.97438 * 12 11 9 14 14 H 1.09004 * 112.84998 * 43.80178 * 13 12 11 15 15 C 1.53778 * 113.61916 * 174.99787 * 13 12 11 16 16 C 1.53778 * 87.08289 * 139.98130 * 15 13 12 17 17 H 1.08999 * 113.61580 * 89.12099 * 16 15 13 18 18 N 1.46502 * 113.61225 * 220.02492 * 16 15 13 19 19 C 1.36942 * 119.99566 * 205.00233 * 18 16 15 20 20 H 1.07998 * 119.99867 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99866 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00305 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46622 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47261 * 119.99422 * 23 21 19 26 26 H 1.48502 * 109.47130 * 239.99968 * 23 21 19 27 27 C 1.53782 * 87.08176 * 334.56803 * 16 15 13 28 28 H 1.08993 * 109.47137 * 60.00304 * 1 2 3 29 29 H 1.09007 * 109.47116 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47478 * 299.99980 * 1 2 3 31 31 H 1.09003 * 109.46619 * 119.99711 * 2 1 3 32 32 H 1.09003 * 109.46947 * 299.99820 * 3 2 1 33 33 H 1.09004 * 109.47304 * 59.99729 * 3 2 1 34 34 H 1.08999 * 109.47106 * 180.02562 * 3 2 1 35 35 H 1.07993 * 122.45503 * 359.97438 * 5 4 2 36 36 H 1.08007 * 124.51729 * 180.17859 * 6 5 4 37 37 H 0.97001 * 119.99627 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.46625 * 300.00086 * 12 11 9 39 39 H 1.08997 * 109.47157 * 59.99760 * 12 11 9 40 40 H 1.09002 * 113.61781 * 254.53677 * 15 13 12 41 41 H 1.09005 * 113.61047 * 25.34922 * 15 13 12 42 42 H 0.96993 * 120.00361 * 24.99834 * 18 16 15 43 43 H 0.96991 * 120.00267 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.61873 * 270.88556 * 27 16 15 45 45 H 1.09002 * 113.61035 * 139.98112 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6586 -0.3658 -2.5076 6 6 2.2086 -1.1042 -3.4787 7 16 3.2339 -2.3025 -2.8279 8 6 2.9002 -1.7651 -1.1872 9 6 3.4624 -2.3543 0.0315 10 8 3.0846 -1.9710 1.1231 11 7 4.3978 -3.3207 -0.0567 12 6 4.9602 -3.9092 1.1614 13 6 5.9917 -4.9742 0.7840 14 1 6.6547 -4.6551 -0.0203 15 6 6.7323 -5.5703 1.9927 16 6 6.6197 -6.9334 1.2899 17 1 7.4542 -7.1513 0.6234 18 7 6.3131 -8.0395 2.2003 19 6 6.6724 -9.3187 1.8689 20 1 7.1814 -9.5121 0.9362 21 6 6.3825 -10.3667 2.7317 22 7 5.7627 -10.1308 3.8687 23 14 6.8719 -12.1117 2.2794 24 1 7.5505 -12.1088 0.9584 25 1 7.7959 -12.6496 3.3099 26 1 5.6578 -12.9641 2.2097 27 6 5.3846 -6.3703 0.5670 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 0.9741 0.4440 -2.7125 36 1 2.0238 -0.9637 -4.5336 37 1 4.6992 -3.6259 -0.9267 38 1 5.4413 -3.1301 1.7526 39 1 4.1621 -4.3677 1.7453 40 1 7.7577 -5.2151 2.0952 41 1 6.1684 -5.5096 2.9236 42 1 5.8558 -7.8658 3.0378 43 1 5.5597 -10.8631 4.4714 44 1 4.4518 -6.5296 1.1078 45 1 5.3222 -6.6612 -0.4816 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086277020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:57 Heat of formation + Delta-G solvation = 12.543538 kcal Electronic energy + Delta-G solvation = -24084.234979 eV Core-core repulsion = 20614.730096 eV Total energy + Delta-G solvation = -3469.504883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.21072 -38.90462 -38.07014 -34.79575 -34.24477 -33.30155 -30.63534 -29.89613 -27.38960 -27.31751 -25.10905 -24.88198 -23.78713 -22.07468 -21.45796 -21.08179 -19.39620 -18.74667 -17.87874 -17.04823 -16.51096 -15.92008 -15.58510 -15.41062 -14.71015 -14.65824 -14.38549 -13.94130 -13.81347 -13.77280 -13.51923 -13.23866 -12.99966 -12.78302 -12.72683 -12.31204 -11.91808 -11.82719 -11.74301 -11.41532 -11.33085 -11.28108 -11.17596 -10.92776 -10.85487 -10.51362 -10.19990 -10.10119 -9.83900 -9.72566 -9.49147 -9.25087 -8.95370 -8.87485 -8.74551 -6.96764 -5.78839 -3.07720 0.25292 1.19842 1.59035 2.11347 3.05791 3.06553 3.42061 3.47544 3.49970 4.50062 4.57701 4.60276 4.72851 4.85691 4.95180 5.01111 5.03405 5.10010 5.21508 5.36874 5.42618 5.44224 5.46119 5.49547 5.62855 5.72171 5.80231 5.81040 5.85931 5.89174 5.91999 6.06147 6.06715 6.08345 6.19844 6.29221 6.34597 6.39383 6.50606 6.58702 6.81706 7.10454 7.36249 7.69062 8.07331 8.39748 9.50846 10.09130 10.43275 11.43623 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.002221 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.513513 B =12602.927564 C =13046.494505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.011 4.011 5 C -0.144 4.144 6 C -0.229 4.229 7 S 0.195 5.805 8 C -0.270 4.270 9 C 0.589 3.411 10 O -0.527 6.527 11 N -0.720 5.720 12 C 0.133 3.867 13 C -0.129 4.129 14 H 0.088 0.912 15 C -0.141 4.141 16 C 0.166 3.834 17 H 0.076 0.924 18 N -0.713 5.713 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.161 4.161 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.397 0.603 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.079 0.921 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.162 23.589 -14.906 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C -0.195 4.195 4 C -0.026 4.026 5 C -0.175 4.175 6 C -0.367 4.367 7 S 0.463 5.537 8 C -0.390 4.390 9 C 0.376 3.624 10 O -0.406 6.406 11 N -0.370 5.370 12 C 0.010 3.990 13 C -0.148 4.148 14 H 0.106 0.894 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.094 0.906 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.203 4.203 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.186 0.814 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.415 22.459 -14.836 27.670 hybrid contribution -0.792 0.111 -0.096 0.806 sum -7.208 22.570 -14.931 28.005 Atomic orbital electron populations 1.21785 0.94298 1.01944 1.01589 1.20435 0.95811 0.95987 0.96733 1.21763 1.01143 0.94958 1.01587 1.19493 0.93708 0.93431 0.95946 1.19875 1.03714 1.02891 0.91058 1.25245 1.04677 1.02222 1.04563 1.83067 1.43108 1.31311 0.96177 1.24463 1.10956 1.06426 0.97156 1.16934 0.79019 0.79229 0.87251 1.90701 1.60567 1.61585 1.27732 1.45960 1.41480 1.38985 1.10598 1.21498 0.96274 0.95445 0.85760 1.22659 0.97553 0.94424 1.00180 0.89355 1.23445 0.99436 0.98222 0.97015 1.21514 0.94573 0.86384 0.92133 0.90644 1.42422 1.68858 1.02386 1.21394 1.19347 1.31206 0.84165 1.02723 0.91046 1.24776 1.01298 0.98132 0.96782 1.69669 1.46349 1.31031 1.10944 0.86122 0.77656 0.84973 0.77459 1.20536 1.21843 1.21857 1.23964 1.01556 0.93859 1.00882 0.92976 0.92602 0.92148 0.85967 0.92999 0.92133 0.92748 0.83931 0.81441 0.76876 0.91422 0.90874 0.91954 0.90046 0.78052 0.93488 0.90284 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.99 37.16 0.33 -0.87 16 2 C -0.07 -0.72 3.07 -91.77 -0.28 -1.00 16 3 C -0.14 -1.17 9.09 37.16 0.34 -0.83 16 4 C -0.01 -0.11 4.72 -105.48 -0.50 -0.61 16 5 C -0.14 -1.19 9.18 -41.41 -0.38 -1.57 16 6 C -0.23 -1.69 10.92 29.18 0.32 -1.37 16 7 S 0.19 1.61 22.17 -107.50 -2.38 -0.77 16 8 C -0.27 -3.04 6.45 -36.79 -0.24 -3.28 16 9 C 0.59 7.93 7.77 -12.89 -0.10 7.83 16 10 O -0.53 -8.55 13.99 5.18 0.07 -8.48 16 11 N -0.72 -8.65 5.55 -61.65 -0.34 -8.99 16 12 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 13 C -0.13 -1.71 3.75 -89.81 -0.34 -2.05 16 14 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.14 -2.22 7.39 -25.92 -0.19 -2.41 16 16 C 0.17 3.18 4.48 -67.12 -0.30 2.88 16 17 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 18 N -0.71 -17.71 5.40 -52.64 -0.28 -17.99 16 19 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C -0.16 -2.65 7.43 -25.92 -0.19 -2.84 16 28 H 0.05 0.37 7.50 -51.93 -0.39 -0.02 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.12 1.60 4.95 -51.93 -0.26 1.34 16 32 H 0.05 0.37 8.00 -51.93 -0.42 -0.04 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.14 0.92 7.67 -52.49 -0.40 0.51 16 36 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.40 3.97 7.61 -40.82 -0.31 3.66 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 42 H 0.39 10.21 7.92 -40.82 -0.32 9.89 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.08 1.44 7.89 -51.93 -0.41 1.03 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -31.65 380.18 -10.41 -42.07 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.11 Total: 10.37 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.80 Total: -11.75 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.10 Total: -54.43 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.07 Total: -8.48 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.38 Total: -0.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.65 -10.41 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086277020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.609 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds