Wall clock time and date at job start Tue Mar 31 2020 13:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 C 1.50699 * 109.47224 * 239.99446 * 2 1 3 5 5 C 1.37475 * 123.34579 * 54.70119 * 4 2 1 6 6 C 1.33819 * 115.09419 * 179.76277 * 5 4 2 7 7 S 1.70613 * 110.96020 * 0.48751 * 6 5 4 8 8 C 1.36647 * 123.35433 * 234.98769 * 4 2 1 9 9 C 1.46582 * 125.45549 * 0.03008 * 8 4 2 10 10 O 1.21706 * 120.00291 * 5.63566 * 9 8 4 11 11 N 1.34780 * 119.99798 * 185.63502 * 9 8 4 12 12 C 1.46502 * 120.00007 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47199 * 179.97438 * 12 11 9 14 14 H 1.09004 * 112.84998 * 43.80178 * 13 12 11 15 15 C 1.53778 * 113.61916 * 174.99787 * 13 12 11 16 16 C 1.53778 * 87.08289 * 139.98130 * 15 13 12 17 17 H 1.08999 * 113.61580 * 89.12099 * 16 15 13 18 18 N 1.46502 * 113.61225 * 220.02492 * 16 15 13 19 19 C 1.36942 * 119.99566 * 205.00233 * 18 16 15 20 20 H 1.07998 * 119.99867 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99866 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00305 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46622 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47261 * 119.99422 * 23 21 19 26 26 H 1.48502 * 109.47130 * 239.99968 * 23 21 19 27 27 C 1.53782 * 87.08176 * 334.56803 * 16 15 13 28 28 H 1.08993 * 109.47137 * 60.00304 * 1 2 3 29 29 H 1.09007 * 109.47116 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47478 * 299.99980 * 1 2 3 31 31 H 1.09003 * 109.46619 * 119.99711 * 2 1 3 32 32 H 1.09003 * 109.46947 * 299.99820 * 3 2 1 33 33 H 1.09004 * 109.47304 * 59.99729 * 3 2 1 34 34 H 1.08999 * 109.47106 * 180.02562 * 3 2 1 35 35 H 1.07993 * 122.45503 * 359.97438 * 5 4 2 36 36 H 1.08007 * 124.51729 * 180.17859 * 6 5 4 37 37 H 0.97001 * 119.99627 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.46625 * 300.00086 * 12 11 9 39 39 H 1.08997 * 109.47157 * 59.99760 * 12 11 9 40 40 H 1.09002 * 113.61781 * 254.53677 * 15 13 12 41 41 H 1.09005 * 113.61047 * 25.34922 * 15 13 12 42 42 H 0.96993 * 120.00361 * 24.99834 * 18 16 15 43 43 H 0.96991 * 120.00267 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.61873 * 270.88556 * 27 16 15 45 45 H 1.09002 * 113.61035 * 139.98112 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6586 -0.3658 -2.5076 6 6 2.2086 -1.1042 -3.4787 7 16 3.2339 -2.3025 -2.8279 8 6 2.9002 -1.7651 -1.1872 9 6 3.4624 -2.3543 0.0315 10 8 3.0846 -1.9710 1.1231 11 7 4.3978 -3.3207 -0.0567 12 6 4.9602 -3.9092 1.1614 13 6 5.9917 -4.9742 0.7840 14 1 6.6547 -4.6551 -0.0203 15 6 6.7323 -5.5703 1.9927 16 6 6.6197 -6.9334 1.2899 17 1 7.4542 -7.1513 0.6234 18 7 6.3131 -8.0395 2.2003 19 6 6.6724 -9.3187 1.8689 20 1 7.1814 -9.5121 0.9362 21 6 6.3825 -10.3667 2.7317 22 7 5.7627 -10.1308 3.8687 23 14 6.8719 -12.1117 2.2794 24 1 7.5505 -12.1088 0.9584 25 1 7.7959 -12.6496 3.3099 26 1 5.6578 -12.9641 2.2097 27 6 5.3846 -6.3703 0.5670 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 0.9741 0.4440 -2.7125 36 1 2.0238 -0.9637 -4.5336 37 1 4.6992 -3.6259 -0.9267 38 1 5.4413 -3.1301 1.7526 39 1 4.1621 -4.3677 1.7453 40 1 7.7577 -5.2151 2.0952 41 1 6.1684 -5.5096 2.9236 42 1 5.8558 -7.8658 3.0378 43 1 5.5597 -10.8631 4.4714 44 1 4.4518 -6.5296 1.1078 45 1 5.3222 -6.6612 -0.4816 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086277020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:56 Heat of formation + Delta-G solvation = -6.731499 kcal Electronic energy + Delta-G solvation = -24085.070807 eV Core-core repulsion = 20614.730096 eV Total energy + Delta-G solvation = -3470.340711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17371 -40.06246 -39.06519 -36.09624 -35.15984 -34.86304 -32.28653 -30.98767 -28.59059 -27.99391 -26.46528 -26.08488 -25.30050 -22.89111 -22.52613 -22.21210 -20.69980 -19.82095 -19.02165 -18.61190 -17.39433 -16.89413 -16.74357 -16.56244 -16.16950 -15.93006 -15.36458 -15.13431 -15.05660 -14.76253 -14.55097 -14.39692 -14.22103 -13.51410 -13.46148 -13.33915 -13.24274 -13.05149 -12.94806 -12.93937 -12.67649 -12.38786 -12.19190 -12.06978 -12.05134 -12.00891 -11.62392 -11.57592 -11.50084 -11.09284 -10.83561 -10.64500 -10.25704 -9.73570 -9.38291 -8.97684 -7.94466 -5.22839 -0.47435 0.51785 0.94701 1.40449 1.47433 1.48173 1.58220 2.08358 2.13788 2.56826 3.37466 3.65594 3.72078 3.79114 3.86912 3.93505 4.02719 4.24496 4.27439 4.31412 4.34749 4.40913 4.44937 4.54375 4.68866 4.74033 4.79411 4.80130 4.96498 4.96872 4.97903 5.03090 5.04881 5.14343 5.20354 5.22713 5.32059 5.37444 5.39212 5.40697 5.52593 5.68870 5.72728 6.28060 6.41468 7.10280 7.33403 8.11676 8.33365 9.29357 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.002221 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.513513 B =12602.927564 C =13046.494505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C -0.131 4.131 4 C -0.012 4.012 5 C -0.156 4.156 6 C -0.213 4.213 7 S 0.224 5.776 8 C -0.311 4.311 9 C 0.584 3.416 10 O -0.566 6.566 11 N -0.712 5.712 12 C 0.140 3.860 13 C -0.098 4.098 14 H 0.121 0.879 15 C -0.135 4.135 16 C 0.144 3.856 17 H 0.083 0.917 18 N -0.730 5.730 19 C -0.240 4.240 20 H 0.080 0.920 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.973 3.027 24 H -0.263 1.263 25 H -0.295 1.295 26 H -0.296 1.296 27 C -0.155 4.155 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.165 0.835 36 H 0.201 0.799 37 H 0.409 0.591 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.055 0.945 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 25.019 -18.302 31.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.095 4.095 3 C -0.189 4.189 4 C -0.028 4.028 5 C -0.187 4.187 6 C -0.351 4.351 7 S 0.493 5.507 8 C -0.431 4.431 9 C 0.373 3.627 10 O -0.448 6.448 11 N -0.363 5.363 12 C 0.016 3.984 13 C -0.117 4.117 14 H 0.139 0.861 15 C -0.174 4.174 16 C 0.035 3.965 17 H 0.100 0.900 18 N -0.367 5.367 19 C -0.372 4.372 20 H 0.098 0.902 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.802 3.198 24 H -0.187 1.187 25 H -0.222 1.222 26 H -0.223 1.223 27 C -0.195 4.195 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.182 0.818 36 H 0.218 0.782 37 H 0.245 0.755 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.089 23.918 -18.309 30.731 hybrid contribution -0.895 -0.242 0.870 1.272 sum -6.985 23.676 -17.439 30.223 Atomic orbital electron populations 1.21752 0.93128 1.01386 1.02882 1.20392 0.96817 0.96655 0.95677 1.21719 1.00318 0.94045 1.02805 1.19729 0.93183 0.93022 0.96913 1.20026 1.04604 1.03993 0.90056 1.25698 1.02792 1.00616 1.05994 1.82908 1.42904 1.31180 0.93711 1.24376 1.12815 1.07941 0.97969 1.17326 0.78727 0.78990 0.87704 1.90689 1.61813 1.62831 1.29452 1.45830 1.41212 1.38628 1.10670 1.21290 0.95552 0.95331 0.86216 1.22492 0.96950 0.92603 0.99634 0.86071 1.23319 1.00754 0.96177 0.97195 1.21947 0.95962 0.86197 0.92410 0.89951 1.42648 1.69095 1.03114 1.21879 1.19774 1.29508 0.85410 1.02469 0.90215 1.25607 1.02443 1.02151 0.97104 1.69831 1.48554 1.31751 1.12249 0.85073 0.76942 0.80086 0.77679 1.18700 1.22186 1.22326 1.23746 0.99260 0.95684 1.00846 0.90892 0.94049 0.91625 0.89332 0.91059 0.91600 0.93965 0.81780 0.78240 0.75514 0.91197 0.93174 0.90126 0.91412 0.79662 0.94129 0.92631 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.99 71.98 0.65 -1.58 16 2 C -0.08 -1.54 3.07 -11.54 -0.04 -1.58 16 3 C -0.13 -2.14 9.09 71.98 0.65 -1.49 16 4 C -0.01 -0.24 4.72 -20.42 -0.10 -0.34 16 5 C -0.16 -2.16 9.18 21.08 0.19 -1.96 16 6 C -0.21 -2.38 10.92 66.81 0.73 -1.65 16 7 S 0.22 3.17 22.17 -56.49 -1.25 1.91 16 8 C -0.31 -6.83 6.45 24.08 0.16 -6.67 16 9 C 0.58 15.99 7.77 86.42 0.67 16.66 16 10 O -0.57 -19.40 13.99 -4.37 -0.06 -19.46 16 11 N -0.71 -16.70 5.55 -467.17 -2.59 -19.29 16 12 C 0.14 3.64 5.51 86.38 0.48 4.11 16 13 C -0.10 -2.43 3.75 -10.27 -0.04 -2.46 16 14 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 15 C -0.13 -4.12 7.39 31.12 0.23 -3.89 16 16 C 0.14 5.43 4.48 45.52 0.20 5.63 16 17 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 18 N -0.73 -36.84 5.40 -320.44 -1.73 -38.57 16 19 C -0.24 -13.27 9.97 84.03 0.84 -12.43 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 22 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 23 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 27 C -0.15 -4.95 7.43 31.12 0.23 -4.72 16 28 H 0.07 0.89 7.50 -2.39 -0.02 0.87 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 2.47 4.95 -2.39 -0.01 2.46 16 32 H 0.07 0.87 8.00 -2.39 -0.02 0.85 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.16 1.50 7.67 -2.91 -0.02 1.47 16 36 H 0.20 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.41 7.47 7.61 -92.71 -0.71 6.76 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.55 7.84 -2.39 -0.02 1.53 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.27 8.08 -2.38 -0.02 2.25 16 42 H 0.37 20.44 7.92 -92.71 -0.73 19.70 16 43 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.05 2.06 7.89 -2.39 -0.02 2.04 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -71.17 380.18 1.56 -69.61 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.44 Total: 34.28 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 5.33 Total: -16.60 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -4.04 Total: -118.08 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.25 Total: 1.91 kcal Total: -71.17 1.56 -69.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086277020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.883 kcal (2) G-P(sol) polarization free energy of solvation -71.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds