Wall clock time and date at job start Tue Mar 31 2020 13:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47541 * 2 1 4 4 C 1.50700 * 109.46749 * 119.99870 * 2 1 3 5 5 C 1.33822 * 124.52241 * 120.00154 * 4 2 1 6 6 C 1.37468 * 115.09949 * 180.26948 * 5 4 2 7 7 C 1.36651 * 113.30181 * 359.51195 * 6 5 4 8 8 C 1.46579 * 125.46202 * 180.16534 * 7 6 5 9 9 O 1.21707 * 120.00041 * 0.31468 * 8 7 6 10 10 N 1.34769 * 120.00143 * 180.31144 * 8 7 6 11 11 C 1.46501 * 120.00358 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47299 * 180.02562 * 11 10 8 13 13 H 1.08994 * 112.85291 * 314.66979 * 12 11 10 14 14 C 1.53782 * 113.61462 * 85.86896 * 12 11 10 15 15 C 1.53954 * 87.02313 * 139.94821 * 14 12 11 16 16 H 1.09008 * 113.53467 * 89.18603 * 15 14 12 17 17 N 1.46501 * 113.74582 * 220.05680 * 15 14 12 18 18 C 1.36937 * 119.99649 * 252.59849 * 17 15 14 19 19 H 1.07993 * 120.00121 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99541 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99837 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47433 * 60.00114 * 22 20 18 24 24 H 1.48502 * 109.47350 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47464 * 299.99952 * 22 20 18 26 26 C 1.53778 * 87.11110 * 334.63804 * 15 14 12 27 27 S 1.70615 * 124.52681 * 299.99652 * 4 2 1 28 28 H 1.09010 * 109.47045 * 300.00466 * 1 2 3 29 29 H 1.08998 * 109.46762 * 59.99419 * 1 2 3 30 30 H 1.08992 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47055 * 239.99509 * 2 1 3 32 32 H 1.09001 * 109.47391 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47111 * 300.00366 * 3 2 1 34 34 H 1.09010 * 109.47331 * 59.99709 * 3 2 1 35 35 H 1.08002 * 122.44530 * 359.97438 * 5 4 2 36 36 H 1.08003 * 123.34628 * 179.72645 * 6 5 4 37 37 H 0.97002 * 120.00385 * 0.02562 * 10 8 7 38 38 H 1.08995 * 109.47401 * 300.00871 * 11 10 8 39 39 H 1.09003 * 109.46810 * 60.00378 * 11 10 8 40 40 H 1.09002 * 113.61108 * 254.52980 * 14 12 11 41 41 H 1.09003 * 113.61442 * 25.42722 * 14 12 11 42 42 H 0.96994 * 119.99455 * 72.59642 * 17 15 14 43 43 H 0.97004 * 120.00224 * 179.97438 * 21 20 18 44 44 H 1.09002 * 113.61717 * 270.80944 * 26 15 14 45 45 H 1.09004 * 113.69556 * 139.91672 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8048 -1.8030 1.2132 6 6 3.1459 -2.2956 2.4505 7 6 2.6345 -1.5623 3.4840 8 6 2.8341 -1.8457 4.9082 9 8 3.5081 -2.7997 5.2502 10 7 2.2713 -1.0500 5.8390 11 6 2.4702 -1.3336 7.2625 12 6 1.7303 -0.2881 8.0991 13 1 1.8863 0.7291 7.7400 14 6 0.2527 -0.6329 8.3497 15 6 0.4553 -0.1040 9.7813 16 1 0.2615 0.9639 9.8823 17 7 -0.2189 -0.9041 10.8068 18 6 -1.3363 -0.4166 11.4304 19 1 -1.7207 0.5573 11.1661 20 6 -1.9754 -1.1750 12.4017 21 7 -1.5072 -2.3622 12.7235 22 14 -3.4993 -0.5098 13.2530 23 1 -4.5581 -0.2534 12.2438 24 1 -3.9878 -1.5042 14.2419 25 1 -3.1633 0.7573 13.9507 26 6 1.9451 -0.4465 9.6136 27 16 1.6920 -0.2291 2.8316 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9564 0.8900 35 1 3.1322 -2.2666 0.2944 36 1 3.7600 -3.1728 2.5916 37 1 1.7338 -0.2899 5.5665 38 1 2.0809 -2.3251 7.4933 39 1 3.5347 -1.2982 7.4946 40 1 -0.4413 -0.0369 7.7572 41 1 0.0400 -1.7011 8.3049 42 1 0.1262 -1.7790 11.0438 43 1 -1.9536 -2.8919 13.4025 44 1 2.1960 -1.4635 9.9150 45 1 2.6166 0.2991 10.0396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086281342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:45 Heat of formation + Delta-G solvation = 7.686727 kcal Electronic energy + Delta-G solvation = -23630.301120 eV Core-core repulsion = 20160.585630 eV Total energy + Delta-G solvation = -3469.715490 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.91832 -38.72114 -38.17643 -35.48804 -34.70294 -33.29653 -30.46662 -29.57184 -27.66087 -27.36606 -25.13121 -25.01655 -23.79042 -21.84748 -21.46038 -21.04674 -19.65185 -19.03709 -18.01172 -17.03440 -16.57175 -15.81391 -15.54135 -15.32391 -14.85625 -14.70861 -14.65826 -14.17469 -14.10657 -13.61947 -13.43184 -13.39161 -12.97847 -12.85972 -12.55771 -12.44961 -11.92635 -11.83605 -11.79883 -11.64884 -11.62568 -11.40762 -11.23317 -11.02411 -10.82796 -10.54889 -10.31820 -10.18178 -9.97849 -9.83504 -9.50571 -9.18534 -8.90240 -8.87169 -8.84836 -6.96510 -5.78047 -3.07037 0.23472 1.14686 1.58856 2.12622 3.05575 3.10738 3.43164 3.47558 3.48776 4.09736 4.39310 4.58184 4.61300 4.65008 4.88164 4.96433 5.00535 5.05169 5.12028 5.18678 5.22101 5.31365 5.32544 5.46450 5.49553 5.50259 5.64646 5.72446 5.74394 5.80887 5.82606 5.89379 5.94346 6.06534 6.08875 6.22504 6.30253 6.35244 6.42196 6.58825 6.82121 7.10930 7.36642 7.68491 8.06512 8.40448 9.51372 10.09717 10.43951 11.44223 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002179 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.341597 B =12845.767795 C =13686.501460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.149 4.149 4 C -0.187 4.187 5 C -0.154 4.154 6 C -0.054 4.054 7 C -0.267 4.267 8 C 0.587 3.413 9 O -0.532 6.532 10 N -0.720 5.720 11 C 0.133 3.867 12 C -0.129 4.129 13 H 0.088 0.912 14 C -0.162 4.162 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.712 5.712 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.141 4.141 27 S 0.205 5.795 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.397 0.603 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.081 0.919 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.836 6.856 -28.128 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.049 4.049 3 C -0.207 4.207 4 C -0.307 4.307 5 C -0.185 4.185 6 C -0.087 4.087 7 C -0.387 4.387 8 C 0.373 3.627 9 O -0.411 6.411 10 N -0.371 5.371 11 C 0.010 3.990 12 C -0.148 4.148 13 H 0.106 0.894 14 C -0.203 4.203 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.350 5.350 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.181 4.181 27 S 0.473 5.527 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.231 0.769 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.305 7.438 -27.063 29.270 hybrid contribution -0.143 -0.897 -0.362 0.978 sum 8.162 6.541 -27.426 29.353 Atomic orbital electron populations 1.21955 0.93636 1.02652 1.02530 1.19788 0.96121 0.95722 0.93224 1.21950 1.01667 0.94581 1.02509 1.24309 1.04569 1.01657 1.00169 1.19975 1.02024 0.97534 0.98919 1.20745 0.98146 0.99567 0.90236 1.24665 1.11781 1.04681 0.97613 1.16966 0.79640 0.82571 0.83564 1.90837 1.39818 1.28960 1.81456 1.45929 1.52973 1.31041 1.07130 1.21497 1.00439 0.99433 0.77643 1.22656 0.98033 0.98075 0.96035 0.89352 1.23990 0.93092 1.01796 1.01439 1.21540 0.89859 0.95396 0.87781 0.90666 1.42402 1.30638 1.19316 1.42656 1.19253 1.02617 1.00801 1.14938 0.91154 1.24774 0.99646 0.96678 0.99829 1.69649 1.41940 1.11354 1.35055 0.86263 0.82982 0.77724 0.79172 1.21251 1.21686 1.21238 1.23441 0.99816 1.02080 0.92767 1.82928 1.47224 1.26538 0.95987 0.92203 0.91652 0.91991 0.89259 0.92061 0.91655 0.92246 0.83931 0.82996 0.76893 0.90893 0.91438 0.92737 0.90302 0.78049 0.93387 0.90051 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.08 37.16 0.34 -0.47 16 2 C -0.03 -0.16 3.25 -91.77 -0.30 -0.46 16 3 C -0.15 -0.75 9.08 37.16 0.34 -0.41 16 4 C -0.19 -1.45 4.95 -35.86 -0.18 -1.63 16 5 C -0.15 -1.27 9.95 -41.41 -0.41 -1.68 16 6 C -0.05 -0.55 10.01 -40.44 -0.40 -0.96 16 7 C -0.27 -3.04 6.45 -36.79 -0.24 -3.28 16 8 C 0.59 8.22 7.78 -12.90 -0.10 8.12 16 9 O -0.53 -9.33 16.84 5.18 0.09 -9.24 16 10 N -0.72 -8.92 5.55 -61.66 -0.34 -9.26 16 11 C 0.13 1.79 5.50 -4.04 -0.02 1.77 16 12 C -0.13 -1.73 3.75 -89.81 -0.34 -2.07 16 13 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.16 -2.68 7.45 -25.83 -0.19 -2.87 16 15 C 0.17 3.20 4.48 -67.03 -0.30 2.90 16 16 H 0.08 1.43 8.10 -51.92 -0.42 1.01 16 17 N -0.71 -17.77 5.41 -52.55 -0.28 -18.05 16 18 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C -0.14 -2.24 7.40 -25.92 -0.19 -2.43 16 27 S 0.21 1.74 21.37 -107.50 -2.30 -0.56 16 28 H 0.06 0.34 7.90 -51.92 -0.41 -0.07 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.42 8.07 -51.93 -0.42 0.01 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.32 7.90 -51.92 -0.41 -0.09 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.40 4.06 7.59 -40.82 -0.31 3.75 16 38 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.45 7.92 -51.93 -0.41 1.03 16 42 H 0.39 10.25 7.92 -40.82 -0.32 9.93 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -32.37 386.43 -10.86 -43.23 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.31 Total: 9.12 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.24 Total: -10.86 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.10 Total: -54.81 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.30 Total: -0.56 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.37 -10.86 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086281342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.916 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds