Wall clock time and date at job start Tue Mar 31 2020 13:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47541 * 2 1 4 4 C 1.50700 * 109.46749 * 119.99870 * 2 1 3 5 5 C 1.33822 * 124.52241 * 120.00154 * 4 2 1 6 6 C 1.37468 * 115.09949 * 180.26948 * 5 4 2 7 7 C 1.36651 * 113.30181 * 359.51195 * 6 5 4 8 8 C 1.46579 * 125.46202 * 180.16534 * 7 6 5 9 9 O 1.21707 * 120.00041 * 0.31468 * 8 7 6 10 10 N 1.34769 * 120.00143 * 180.31144 * 8 7 6 11 11 C 1.46501 * 120.00358 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47299 * 180.02562 * 11 10 8 13 13 H 1.08994 * 112.85291 * 314.66979 * 12 11 10 14 14 C 1.53782 * 113.61462 * 85.86896 * 12 11 10 15 15 C 1.53954 * 87.02313 * 139.94821 * 14 12 11 16 16 H 1.09008 * 113.53467 * 89.18603 * 15 14 12 17 17 N 1.46501 * 113.74582 * 220.05680 * 15 14 12 18 18 C 1.36937 * 119.99649 * 252.59849 * 17 15 14 19 19 H 1.07993 * 120.00121 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99541 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99837 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47433 * 60.00114 * 22 20 18 24 24 H 1.48502 * 109.47350 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47464 * 299.99952 * 22 20 18 26 26 C 1.53778 * 87.11110 * 334.63804 * 15 14 12 27 27 S 1.70615 * 124.52681 * 299.99652 * 4 2 1 28 28 H 1.09010 * 109.47045 * 300.00466 * 1 2 3 29 29 H 1.08998 * 109.46762 * 59.99419 * 1 2 3 30 30 H 1.08992 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47055 * 239.99509 * 2 1 3 32 32 H 1.09001 * 109.47391 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47111 * 300.00366 * 3 2 1 34 34 H 1.09010 * 109.47331 * 59.99709 * 3 2 1 35 35 H 1.08002 * 122.44530 * 359.97438 * 5 4 2 36 36 H 1.08003 * 123.34628 * 179.72645 * 6 5 4 37 37 H 0.97002 * 120.00385 * 0.02562 * 10 8 7 38 38 H 1.08995 * 109.47401 * 300.00871 * 11 10 8 39 39 H 1.09003 * 109.46810 * 60.00378 * 11 10 8 40 40 H 1.09002 * 113.61108 * 254.52980 * 14 12 11 41 41 H 1.09003 * 113.61442 * 25.42722 * 14 12 11 42 42 H 0.96994 * 119.99455 * 72.59642 * 17 15 14 43 43 H 0.97004 * 120.00224 * 179.97438 * 21 20 18 44 44 H 1.09002 * 113.61717 * 270.80944 * 26 15 14 45 45 H 1.09004 * 113.69556 * 139.91672 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8048 -1.8030 1.2132 6 6 3.1459 -2.2956 2.4505 7 6 2.6345 -1.5623 3.4840 8 6 2.8341 -1.8457 4.9082 9 8 3.5081 -2.7997 5.2502 10 7 2.2713 -1.0500 5.8390 11 6 2.4702 -1.3336 7.2625 12 6 1.7303 -0.2881 8.0991 13 1 1.8863 0.7291 7.7400 14 6 0.2527 -0.6329 8.3497 15 6 0.4553 -0.1040 9.7813 16 1 0.2615 0.9639 9.8823 17 7 -0.2189 -0.9041 10.8068 18 6 -1.3363 -0.4166 11.4304 19 1 -1.7207 0.5573 11.1661 20 6 -1.9754 -1.1750 12.4017 21 7 -1.5072 -2.3622 12.7235 22 14 -3.4993 -0.5098 13.2530 23 1 -4.5581 -0.2534 12.2438 24 1 -3.9878 -1.5042 14.2419 25 1 -3.1633 0.7573 13.9507 26 6 1.9451 -0.4465 9.6136 27 16 1.6920 -0.2291 2.8316 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9564 0.8900 35 1 3.1322 -2.2666 0.2944 36 1 3.7600 -3.1728 2.5916 37 1 1.7338 -0.2899 5.5665 38 1 2.0809 -2.3251 7.4933 39 1 3.5347 -1.2982 7.4946 40 1 -0.4413 -0.0369 7.7572 41 1 0.0400 -1.7011 8.3049 42 1 0.1262 -1.7790 11.0438 43 1 -1.9536 -2.8919 13.4025 44 1 2.1960 -1.4635 9.9150 45 1 2.6166 0.2991 10.0396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086281342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:44 Heat of formation + Delta-G solvation = -11.909365 kcal Electronic energy + Delta-G solvation = -23631.150870 eV Core-core repulsion = 20160.585630 eV Total energy + Delta-G solvation = -3470.565240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.01102 -39.88978 -39.03845 -36.15751 -35.97698 -35.05514 -32.25901 -30.55707 -28.53260 -28.03822 -26.46885 -26.15705 -25.40245 -22.82057 -22.35002 -22.04093 -20.77782 -20.20103 -19.11843 -18.77841 -17.50047 -16.78131 -16.71926 -16.57049 -16.12647 -15.89755 -15.35147 -15.33225 -15.07696 -14.83783 -14.71824 -14.39117 -14.14855 -13.51006 -13.40630 -13.24431 -13.22455 -13.04449 -12.93218 -12.91739 -12.62932 -12.38187 -12.24513 -12.12209 -12.08790 -12.07825 -11.64587 -11.56804 -11.55913 -11.23390 -11.03275 -10.80190 -10.27512 -9.65860 -9.53587 -8.97482 -7.93748 -5.22273 -0.53758 0.43373 0.89267 1.36145 1.47529 1.50673 1.56725 2.04061 2.13004 2.57385 3.37665 3.57163 3.65150 3.71886 3.80236 3.93077 3.97735 4.20398 4.24447 4.30701 4.34680 4.40127 4.44184 4.53278 4.62283 4.72099 4.76310 4.83378 4.95781 4.95983 4.97944 5.02518 5.06060 5.10093 5.19003 5.21084 5.28256 5.33162 5.35091 5.39735 5.41156 5.52402 5.71766 6.28227 6.37085 7.03621 7.33713 8.12131 8.33936 9.29560 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002179 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.341597 B =12845.767795 C =13686.501460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C -0.150 4.150 4 C -0.177 4.177 5 C -0.162 4.162 6 C -0.054 4.054 7 C -0.305 4.305 8 C 0.584 3.416 9 O -0.579 6.579 10 N -0.711 5.711 11 C 0.138 3.862 12 C -0.098 4.098 13 H 0.122 0.878 14 C -0.155 4.155 15 C 0.145 3.855 16 H 0.083 0.917 17 N -0.730 5.730 18 C -0.243 4.243 19 H 0.080 0.920 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.974 3.026 23 H -0.277 1.277 24 H -0.298 1.298 25 H -0.276 1.276 26 C -0.135 4.135 27 S 0.237 5.763 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.409 0.591 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 9.355 -30.639 33.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.049 4.049 3 C -0.207 4.207 4 C -0.298 4.298 5 C -0.192 4.192 6 C -0.089 4.089 7 C -0.425 4.425 8 C 0.372 3.628 9 O -0.461 6.461 10 N -0.362 5.362 11 C 0.014 3.986 12 C -0.117 4.117 13 H 0.140 0.860 14 C -0.196 4.196 15 C 0.035 3.965 16 H 0.101 0.899 17 N -0.367 5.367 18 C -0.375 4.375 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.803 3.197 23 H -0.203 1.203 24 H -0.225 1.225 25 H -0.202 1.202 26 C -0.174 4.174 27 S 0.506 5.494 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.246 0.754 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.999 10.016 -29.624 32.278 hybrid contribution -0.022 -1.610 0.272 1.633 sum 7.977 8.406 -29.352 31.557 Atomic orbital electron populations 1.21975 0.93277 1.02506 1.03108 1.19924 0.96330 0.96075 0.92568 1.21965 1.01578 0.94062 1.03117 1.24731 1.03217 1.01119 1.00696 1.20138 1.02316 0.97854 0.98880 1.20924 0.97622 0.99268 0.91041 1.24515 1.14476 1.07175 0.96359 1.17344 0.78791 0.81861 0.84786 1.90801 1.41970 1.30897 1.82424 1.45792 1.52751 1.31193 1.06419 1.21321 1.00456 0.98349 0.78438 1.22495 0.95182 0.99593 0.94409 0.85985 1.23777 0.95771 1.00451 0.99613 1.21974 0.91736 0.95188 0.87593 0.89940 1.42628 1.30660 1.19394 1.44029 1.19700 1.02879 1.00769 1.14110 0.90238 1.25615 1.03051 0.97220 1.01376 1.69821 1.43575 1.12858 1.36062 0.85201 0.79537 0.77024 0.77944 1.20343 1.22487 1.20199 1.23318 0.97624 1.01845 0.94654 1.82735 1.45917 1.24676 0.96099 0.92666 0.90121 0.92508 0.87783 0.92240 0.90174 0.92601 0.81695 0.83610 0.75425 0.93154 0.91105 0.91270 0.92654 0.79670 0.94130 0.91430 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.08 71.98 0.65 -0.56 16 2 C -0.03 -0.24 3.25 -11.54 -0.04 -0.28 16 3 C -0.15 -1.07 9.08 71.98 0.65 -0.41 16 4 C -0.18 -2.35 4.95 24.68 0.12 -2.22 16 5 C -0.16 -2.38 9.95 21.08 0.21 -2.17 16 6 C -0.05 -1.10 10.01 21.72 0.22 -0.88 16 7 C -0.31 -6.81 6.45 24.08 0.16 -6.66 16 8 C 0.58 16.47 7.78 86.42 0.67 17.14 16 9 O -0.58 -21.02 16.84 -4.37 -0.07 -21.10 16 10 N -0.71 -16.99 5.55 -467.19 -2.59 -19.58 16 11 C 0.14 3.64 5.50 86.38 0.47 4.12 16 12 C -0.10 -2.43 3.75 -10.27 -0.04 -2.47 16 13 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 14 C -0.16 -4.98 7.45 31.18 0.23 -4.75 16 15 C 0.14 5.45 4.48 45.58 0.20 5.65 16 16 H 0.08 2.98 8.10 -2.38 -0.02 2.96 16 17 N -0.73 -36.88 5.41 -320.17 -1.73 -38.61 16 18 C -0.24 -13.44 9.97 84.03 0.84 -12.61 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 21 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 22 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 C -0.13 -4.13 7.40 31.12 0.23 -3.90 16 27 S 0.24 3.58 21.37 -56.49 -1.21 2.38 16 28 H 0.05 0.50 7.90 -2.38 -0.02 0.48 16 29 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.63 8.07 -2.39 -0.02 0.61 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.05 0.44 7.90 -2.38 -0.02 0.42 16 35 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.41 7.59 7.59 -92.71 -0.70 6.89 16 38 H 0.05 1.58 7.87 -2.39 -0.02 1.56 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 2.05 7.92 -2.39 -0.02 2.03 16 42 H 0.37 20.46 7.92 -92.71 -0.73 19.73 16 43 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.07 2.28 8.08 -2.39 -0.02 2.26 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -71.72 386.43 1.31 -70.41 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.45 Total: 32.61 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 5.05 Total: -14.20 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -4.04 Total: -118.36 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.07 Total: -21.10 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.21 Total: 2.38 kcal Total: -71.72 1.31 -70.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086281342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.500 kcal (2) G-P(sol) polarization free energy of solvation -71.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds