Wall clock time and date at job start Tue Mar 31 2020 13:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47220 * 2 1 4 4 C 1.50703 * 109.47010 * 180.02562 * 3 2 1 5 5 C 1.33813 * 124.52065 * 89.99739 * 4 3 2 6 6 C 1.37469 * 115.09923 * 179.72803 * 5 4 3 7 7 C 1.36650 * 113.29739 * 0.27518 * 6 5 4 8 8 C 1.46580 * 125.45869 * 180.02562 * 7 6 5 9 9 O 1.21701 * 120.00320 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00095 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99835 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46753 * 179.97438 * 11 10 8 13 13 H 1.09005 * 112.84923 * 45.33076 * 12 11 10 14 14 C 1.53779 * 113.61175 * 176.52510 * 12 11 10 15 15 C 1.53787 * 87.07974 * 139.98004 * 14 12 11 16 16 H 1.08998 * 113.61665 * 219.93642 * 15 14 12 17 17 N 1.46505 * 113.61207 * 89.11191 * 15 14 12 18 18 C 1.36936 * 119.99695 * 155.00015 * 17 15 14 19 19 H 1.08004 * 120.00394 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99873 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99975 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00080 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47304 * 90.00466 * 22 20 18 24 24 H 1.48505 * 109.47078 * 210.00670 * 22 20 18 25 25 H 1.48504 * 109.47114 * 330.00226 * 22 20 18 26 26 C 1.53774 * 113.61470 * 274.13489 * 12 11 10 27 27 S 1.70620 * 124.52206 * 270.16750 * 4 3 2 28 28 H 1.09001 * 109.47000 * 59.99711 * 1 2 3 29 29 H 1.08996 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47030 * 300.00036 * 1 2 3 31 31 H 1.09006 * 109.47030 * 239.99964 * 2 1 3 32 32 H 1.08996 * 109.47090 * 119.99808 * 2 1 3 33 33 H 1.09001 * 109.46709 * 60.00199 * 3 2 1 34 34 H 1.08996 * 109.46932 * 299.99905 * 3 2 1 35 35 H 1.08002 * 122.45417 * 0.02562 * 5 4 3 36 36 H 1.08002 * 123.35488 * 180.30502 * 6 5 4 37 37 H 0.96991 * 119.99659 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.46528 * 299.99466 * 11 10 8 39 39 H 1.08993 * 109.46974 * 59.99863 * 11 10 8 40 40 H 1.08993 * 113.61365 * 254.52757 * 14 12 11 41 41 H 1.08997 * 113.61714 * 25.35052 * 14 12 11 42 42 H 0.97000 * 120.00476 * 335.00877 * 17 15 14 43 43 H 0.97001 * 120.00278 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.61380 * 334.57051 * 26 12 11 45 45 H 1.09001 * 113.61718 * 105.46631 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3049 1.4426 -1.1035 6 6 5.6612 1.4484 -0.8790 7 6 5.9894 1.4471 0.4475 8 6 7.3527 1.4528 0.9861 9 8 8.3059 1.4598 0.2295 10 7 7.5506 1.4503 2.3193 11 6 8.9131 1.4566 2.8576 12 6 8.8574 1.4527 4.3866 13 1 8.1402 0.7334 4.7822 14 6 10.2410 1.3734 5.0532 15 6 9.7155 2.3869 6.0836 16 1 10.4483 3.1429 6.3654 17 7 9.0663 1.7647 7.2402 18 6 9.0105 2.4316 8.4349 19 1 9.4447 3.4165 8.5244 20 6 8.3958 1.8419 9.5309 21 7 8.3418 2.4832 10.6791 22 14 7.6441 0.1389 9.3760 23 1 8.6656 -0.8855 9.7113 24 1 6.4962 0.0177 10.3103 25 1 7.1728 -0.0693 7.9832 26 6 8.7257 2.8559 5.0017 27 16 4.5146 1.4381 1.4047 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.8821 1.4431 -2.0973 36 1 6.3943 1.4540 -1.6721 37 1 6.7909 1.4443 2.9223 38 1 9.4448 0.5704 2.5107 39 1 9.4347 2.3504 2.5156 40 1 10.4654 0.3952 5.4781 41 1 11.0482 1.7600 4.4311 42 1 8.6760 0.8803 7.1599 43 1 7.9119 2.0713 11.4449 44 1 9.1176 3.6498 4.3660 45 1 7.7286 3.0727 5.3852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086377822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:26 Heat of formation + Delta-G solvation = 10.050896 kcal Electronic energy + Delta-G solvation = -23657.419146 eV Core-core repulsion = 20187.806174 eV Total energy + Delta-G solvation = -3469.612972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.97406 -38.81977 -38.13613 -35.29273 -34.78286 -33.26984 -31.00371 -30.54512 -28.31562 -26.59252 -25.20672 -24.18929 -23.43439 -21.99434 -21.89081 -21.39809 -19.62725 -18.63839 -18.01617 -17.68045 -16.59518 -15.95292 -15.57936 -15.38210 -15.23547 -14.83830 -14.47941 -14.21397 -14.09884 -13.61647 -13.57696 -13.53924 -13.05800 -12.78815 -12.71008 -12.51016 -12.20803 -12.07882 -11.88302 -11.66606 -11.58931 -11.40154 -11.31007 -11.05976 -10.94148 -10.53835 -10.39111 -10.21415 -9.99071 -9.69826 -9.57151 -9.22874 -8.95010 -8.91447 -8.86760 -7.33402 -5.82499 -3.18808 0.21792 1.14731 1.57676 2.10410 3.02743 3.06346 3.31926 3.35165 3.40886 4.19880 4.47818 4.53209 4.56667 4.62102 4.84899 4.89688 4.90832 5.00349 5.05781 5.06017 5.21821 5.29070 5.32551 5.36475 5.39496 5.47327 5.59722 5.60332 5.71012 5.73510 5.79447 5.81803 5.85733 5.90787 6.06311 6.09962 6.20202 6.25551 6.45513 6.59378 6.70335 6.86370 7.32776 7.95338 8.01772 8.37166 9.14831 9.87038 10.06240 11.35599 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.002693 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.280536 B =10395.938912 C =12171.523616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.053 4.053 4 C -0.191 4.191 5 C -0.154 4.154 6 C -0.053 4.053 7 C -0.268 4.268 8 C 0.588 3.412 9 O -0.535 6.535 10 N -0.721 5.721 11 C 0.132 3.868 12 C -0.125 4.125 13 H 0.090 0.910 14 C -0.148 4.148 15 C 0.173 3.827 16 H 0.072 0.928 17 N -0.730 5.730 18 C -0.247 4.247 19 H 0.092 0.908 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.278 1.278 26 C -0.167 4.167 27 S 0.206 5.794 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.399 0.601 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.073 0.927 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.473 -3.879 -25.014 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.092 4.092 4 C -0.311 4.311 5 C -0.185 4.185 6 C -0.086 4.086 7 C -0.389 4.389 8 C 0.374 3.626 9 O -0.414 6.414 10 N -0.371 5.371 11 C 0.009 3.991 12 C -0.144 4.144 13 H 0.108 0.892 14 C -0.187 4.187 15 C 0.061 3.939 16 H 0.090 0.910 17 N -0.370 5.370 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.579 5.579 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.208 4.208 27 S 0.474 5.526 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.233 0.767 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.047 -3.708 -23.722 26.863 hybrid contribution -0.786 -1.236 -1.348 1.991 sum -12.834 -4.944 -25.070 28.595 Atomic orbital electron populations 1.21782 0.95197 1.02060 1.02030 1.21573 0.96077 0.95424 1.02831 1.20280 0.87001 0.98202 1.03724 1.24280 1.01218 1.07798 0.97809 1.19946 0.92564 1.06438 0.99561 1.20737 0.96148 0.96573 0.95173 1.24631 0.96977 1.19100 0.98166 1.16967 0.86739 0.76512 0.82376 1.90820 1.41904 1.50554 1.58085 1.45950 1.10143 1.74984 1.06053 1.21525 0.81921 1.02189 0.93457 1.22773 0.99801 1.00026 0.91786 0.89215 1.23453 0.95161 1.01385 0.98714 1.21039 0.93158 0.93890 0.85794 0.90972 1.42520 1.67920 1.18592 1.07954 1.19113 1.31624 1.01065 0.85838 0.89010 1.24684 1.00763 0.98024 0.95583 1.69697 1.49064 1.37996 1.01145 0.86565 0.79200 0.85766 0.77044 1.21005 1.21655 1.20401 1.23896 1.02626 0.94460 0.99832 1.83166 0.94181 1.67792 1.07447 0.92558 0.92380 0.92482 0.91485 0.91603 0.90420 0.89719 0.83904 0.83018 0.76677 0.91470 0.91066 0.91366 0.89908 0.80528 0.92971 0.90874 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 3 C -0.05 -0.32 5.65 -27.88 -0.16 -0.47 16 4 C -0.19 -1.55 5.53 -35.86 -0.20 -1.75 16 5 C -0.15 -1.28 9.99 -41.41 -0.41 -1.70 16 6 C -0.05 -0.54 10.01 -40.44 -0.40 -0.95 16 7 C -0.27 -3.08 6.45 -36.79 -0.24 -3.32 16 8 C 0.59 8.11 7.78 -12.89 -0.10 8.01 16 9 O -0.53 -9.01 16.84 5.19 0.09 -8.92 16 10 N -0.72 -9.01 5.55 -61.65 -0.34 -9.35 16 11 C 0.13 1.69 5.50 -4.04 -0.02 1.67 16 12 C -0.13 -1.73 3.62 -89.81 -0.33 -2.06 16 13 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.15 -2.16 7.39 -25.92 -0.19 -2.35 16 15 C 0.17 3.16 4.57 -67.02 -0.31 2.86 16 16 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 17 N -0.73 -16.63 5.11 -52.54 -0.27 -16.90 16 18 C -0.25 -6.80 10.45 -15.06 -0.16 -6.95 16 19 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -28.83 13.97 55.49 0.78 -28.05 16 22 Si 0.88 21.59 27.73 -169.99 -4.71 16.88 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 26 C -0.17 -2.61 7.44 -25.83 -0.19 -2.81 16 27 S 0.21 1.88 22.10 -107.50 -2.38 -0.50 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.40 4.45 7.59 -40.82 -0.31 4.14 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.36 8.08 5.76 -40.82 -0.24 7.85 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -32.35 385.15 -10.92 -43.27 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.29 Total: 8.74 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.59 Total: -10.97 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.16 Total: -54.31 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.38 Total: -0.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.35 -10.92 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086377822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.325 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds