Wall clock time and date at job start Tue Mar 31 2020 13:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47220 * 2 1 4 4 C 1.50703 * 109.47010 * 180.02562 * 3 2 1 5 5 C 1.33813 * 124.52065 * 89.99739 * 4 3 2 6 6 C 1.37469 * 115.09923 * 179.72803 * 5 4 3 7 7 C 1.36650 * 113.29739 * 0.27518 * 6 5 4 8 8 C 1.46580 * 125.45869 * 180.02562 * 7 6 5 9 9 O 1.21701 * 120.00320 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00095 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99835 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46753 * 179.97438 * 11 10 8 13 13 H 1.09005 * 112.84923 * 45.33076 * 12 11 10 14 14 C 1.53779 * 113.61175 * 176.52510 * 12 11 10 15 15 C 1.53787 * 87.07974 * 139.98004 * 14 12 11 16 16 H 1.08998 * 113.61665 * 219.93642 * 15 14 12 17 17 N 1.46505 * 113.61207 * 89.11191 * 15 14 12 18 18 C 1.36936 * 119.99695 * 155.00015 * 17 15 14 19 19 H 1.08004 * 120.00394 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99873 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99975 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00080 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47304 * 90.00466 * 22 20 18 24 24 H 1.48505 * 109.47078 * 210.00670 * 22 20 18 25 25 H 1.48504 * 109.47114 * 330.00226 * 22 20 18 26 26 C 1.53774 * 113.61470 * 274.13489 * 12 11 10 27 27 S 1.70620 * 124.52206 * 270.16750 * 4 3 2 28 28 H 1.09001 * 109.47000 * 59.99711 * 1 2 3 29 29 H 1.08996 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47030 * 300.00036 * 1 2 3 31 31 H 1.09006 * 109.47030 * 239.99964 * 2 1 3 32 32 H 1.08996 * 109.47090 * 119.99808 * 2 1 3 33 33 H 1.09001 * 109.46709 * 60.00199 * 3 2 1 34 34 H 1.08996 * 109.46932 * 299.99905 * 3 2 1 35 35 H 1.08002 * 122.45417 * 0.02562 * 5 4 3 36 36 H 1.08002 * 123.35488 * 180.30502 * 6 5 4 37 37 H 0.96991 * 119.99659 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.46528 * 299.99466 * 11 10 8 39 39 H 1.08993 * 109.46974 * 59.99863 * 11 10 8 40 40 H 1.08993 * 113.61365 * 254.52757 * 14 12 11 41 41 H 1.08997 * 113.61714 * 25.35052 * 14 12 11 42 42 H 0.97000 * 120.00476 * 335.00877 * 17 15 14 43 43 H 0.97001 * 120.00278 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.61380 * 334.57051 * 26 12 11 45 45 H 1.09001 * 113.61718 * 105.46631 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3049 1.4426 -1.1035 6 6 5.6612 1.4484 -0.8790 7 6 5.9894 1.4471 0.4475 8 6 7.3527 1.4528 0.9861 9 8 8.3059 1.4598 0.2295 10 7 7.5506 1.4503 2.3193 11 6 8.9131 1.4566 2.8576 12 6 8.8574 1.4527 4.3866 13 1 8.1402 0.7334 4.7822 14 6 10.2410 1.3734 5.0532 15 6 9.7155 2.3869 6.0836 16 1 10.4483 3.1429 6.3654 17 7 9.0663 1.7647 7.2402 18 6 9.0105 2.4316 8.4349 19 1 9.4447 3.4165 8.5244 20 6 8.3958 1.8419 9.5309 21 7 8.3418 2.4832 10.6791 22 14 7.6441 0.1389 9.3760 23 1 8.6656 -0.8855 9.7113 24 1 6.4962 0.0177 10.3103 25 1 7.1728 -0.0693 7.9832 26 6 8.7257 2.8559 5.0017 27 16 4.5146 1.4381 1.4047 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.8821 1.4431 -2.0973 36 1 6.3943 1.4540 -1.6721 37 1 6.7909 1.4443 2.9223 38 1 9.4448 0.5704 2.5107 39 1 9.4347 2.3504 2.5156 40 1 10.4654 0.3952 5.4781 41 1 11.0482 1.7600 4.4311 42 1 8.6760 0.8803 7.1599 43 1 7.9119 2.0713 11.4449 44 1 9.1176 3.6498 4.3660 45 1 7.7286 3.0727 5.3852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086377822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:25 Heat of formation + Delta-G solvation = -9.480413 kcal Electronic energy + Delta-G solvation = -23658.266087 eV Core-core repulsion = 20187.806174 eV Total energy + Delta-G solvation = -3470.459913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03667 -40.02595 -38.92412 -36.14171 -35.77850 -35.01330 -32.71239 -31.45861 -29.34753 -27.45441 -26.47310 -25.44817 -24.67398 -23.29730 -22.37835 -22.35871 -20.66111 -19.89605 -19.58288 -18.91343 -17.46915 -16.87909 -16.72775 -16.55527 -16.07728 -16.04631 -15.80062 -15.17642 -15.11816 -14.80051 -14.64626 -14.56587 -14.26130 -14.05482 -13.57255 -13.42111 -13.33074 -13.11135 -13.02221 -12.75760 -12.69831 -12.38137 -12.19454 -12.09014 -11.94322 -11.87864 -11.66305 -11.60688 -11.53329 -11.22982 -10.98438 -10.84070 -10.26238 -9.66250 -9.57720 -9.29724 -8.02447 -5.36171 -0.54907 0.42254 0.87136 1.35102 1.37415 1.41678 1.48619 2.05683 2.12123 2.48273 3.27696 3.50570 3.62753 3.68929 3.71807 3.88921 3.97962 4.04464 4.14311 4.25653 4.27879 4.34487 4.40631 4.59832 4.67260 4.70372 4.72485 4.83222 4.92277 4.94667 4.95551 5.01985 5.06984 5.13779 5.19061 5.21411 5.27475 5.29880 5.40307 5.42519 5.44095 5.52529 5.80879 6.22866 6.34549 7.01317 7.07985 7.84710 8.03387 9.19064 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.002693 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.280536 B =10395.938912 C =12171.523616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.053 4.053 4 C -0.181 4.181 5 C -0.159 4.159 6 C -0.051 4.051 7 C -0.302 4.302 8 C 0.587 3.413 9 O -0.574 6.574 10 N -0.716 5.716 11 C 0.138 3.862 12 C -0.108 4.108 13 H 0.089 0.911 14 C -0.131 4.131 15 C 0.146 3.854 16 H 0.059 0.941 17 N -0.733 5.733 18 C -0.232 4.232 19 H 0.057 0.943 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.955 3.045 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.249 1.249 26 C -0.156 4.156 27 S 0.216 5.784 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.167 0.833 36 H 0.151 0.849 37 H 0.406 0.594 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.367 0.633 43 H 0.258 0.742 44 H 0.091 0.909 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.037 -5.238 -27.418 31.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.092 4.092 4 C -0.301 4.301 5 C -0.189 4.189 6 C -0.085 4.085 7 C -0.422 4.422 8 C 0.375 3.625 9 O -0.456 6.456 10 N -0.367 5.367 11 C 0.015 3.985 12 C -0.127 4.127 13 H 0.107 0.893 14 C -0.170 4.170 15 C 0.037 3.963 16 H 0.077 0.923 17 N -0.375 5.375 18 C -0.363 4.363 19 H 0.075 0.925 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.782 3.218 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.173 1.173 26 C -0.197 4.197 27 S 0.485 5.515 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.185 0.815 36 H 0.168 0.832 37 H 0.241 0.759 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.200 0.800 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.608 -5.067 -26.176 29.934 hybrid contribution -0.297 -0.696 -0.659 1.003 sum -13.904 -5.763 -26.835 30.767 Atomic orbital electron populations 1.21773 0.94445 1.02283 1.02455 1.21554 0.96699 0.95031 1.02463 1.20397 0.85352 0.98654 1.04815 1.24633 1.02271 1.05985 0.97199 1.20137 0.91653 1.06311 1.00824 1.20944 0.97188 0.95581 0.94813 1.24510 0.96778 1.21804 0.99100 1.17260 0.87318 0.75635 0.82309 1.90788 1.43315 1.52603 1.58896 1.45903 1.10290 1.74495 1.05974 1.21410 0.82240 1.02398 0.92409 1.22600 0.99219 0.98459 0.92382 0.89307 1.23349 0.96289 1.00193 0.97182 1.21373 0.93998 0.95288 0.85672 0.92252 1.42439 1.68680 1.18704 1.07677 1.19064 1.29726 0.99786 0.87697 0.92545 1.25523 1.02258 1.02702 0.95200 1.69886 1.51088 1.40296 1.02206 0.85409 0.77918 0.80138 0.78295 1.20565 1.22320 1.17311 1.23756 1.00810 0.96279 0.98822 1.83086 0.93156 1.67586 1.07662 0.91767 0.92308 0.92439 0.91439 0.92446 0.89914 0.88060 0.81518 0.83152 0.75865 0.91122 0.91069 0.91232 0.87370 0.79973 0.93341 0.89059 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.40 16 2 C -0.12 -1.08 5.92 30.60 0.18 -0.90 16 3 C -0.05 -0.49 5.65 29.85 0.17 -0.32 16 4 C -0.18 -2.50 5.53 24.68 0.14 -2.36 16 5 C -0.16 -2.29 9.99 21.08 0.21 -2.08 16 6 C -0.05 -0.98 10.01 21.72 0.22 -0.77 16 7 C -0.30 -6.63 6.45 24.08 0.16 -6.47 16 8 C 0.59 15.73 7.78 86.42 0.67 16.41 16 9 O -0.57 -19.18 16.84 -4.35 -0.07 -19.25 16 10 N -0.72 -16.85 5.55 -467.16 -2.59 -19.44 16 11 C 0.14 3.26 5.50 86.38 0.47 3.74 16 12 C -0.11 -2.73 3.62 -10.27 -0.04 -2.77 16 13 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 14 C -0.13 -3.51 7.39 31.12 0.23 -3.28 16 15 C 0.15 5.21 4.57 45.58 0.21 5.42 16 16 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 17 N -0.73 -32.91 5.11 -320.15 -1.64 -34.55 16 18 C -0.23 -13.00 10.45 84.03 0.88 -12.12 16 19 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 21 N -0.98 -62.73 13.97 21.65 0.30 -62.42 16 22 Si 0.96 44.49 27.73 68.60 1.90 46.39 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.25 -10.24 6.52 99.48 0.65 -9.59 16 26 C -0.16 -4.64 7.44 31.18 0.23 -4.41 16 27 S 0.22 3.60 22.10 -56.49 -1.25 2.35 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.41 8.38 7.59 -92.72 -0.70 7.68 16 38 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.07 1.72 7.87 -2.39 -0.02 1.70 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.11 2.39 8.10 -2.39 -0.02 2.37 16 42 H 0.37 15.65 5.76 -92.71 -0.53 15.12 16 43 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.09 2.39 7.92 -2.39 -0.02 2.37 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -71.44 385.15 1.26 -70.18 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.31 Total: 30.40 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.91 Total: -13.65 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -3.93 Total: -116.42 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.07 Total: -19.25 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.25 Total: 2.35 kcal Total: -71.44 1.26 -70.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086377822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.702 kcal (2) G-P(sol) polarization free energy of solvation -71.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds