Wall clock time and date at job start Tue Mar 31 2020 13:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47269 * 2 1 4 4 C 1.37476 * 122.44846 * 265.29726 * 3 2 1 5 5 C 1.36649 * 113.29649 * 180.18219 * 4 3 2 6 6 C 1.46584 * 125.45858 * 179.83787 * 5 4 3 7 7 O 1.21706 * 119.99710 * 359.71131 * 6 5 4 8 8 N 1.34776 * 120.00082 * 179.71169 * 6 5 4 9 9 C 1.46500 * 119.99996 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46967 * 180.02562 * 9 8 6 11 11 H 1.08993 * 112.85129 * 43.80647 * 10 9 8 12 12 C 1.53783 * 113.61330 * 175.00389 * 10 9 8 13 13 C 1.53775 * 87.08490 * 140.06098 * 12 10 9 14 14 H 1.08992 * 113.61649 * 219.93466 * 13 12 10 15 15 N 1.46502 * 113.61436 * 89.11310 * 13 12 10 16 16 C 1.36930 * 120.00159 * 155.00234 * 15 13 12 17 17 H 1.08000 * 119.99841 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00182 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99887 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00212 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99941 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00122 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00115 * 20 18 16 24 24 C 1.53785 * 113.68612 * 272.53368 * 10 9 8 25 25 S 1.75826 * 109.08285 * 359.56808 * 5 4 3 26 26 C 1.33812 * 122.45168 * 84.99925 * 3 2 1 27 27 C 1.50700 * 124.52275 * 0.04367 * 26 3 2 28 28 H 1.09004 * 109.46973 * 59.99757 * 1 2 3 29 29 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47025 * 300.00207 * 1 2 3 31 31 H 1.09003 * 109.47025 * 239.99793 * 2 1 3 32 32 H 1.09000 * 109.47616 * 119.99890 * 2 1 3 33 33 H 1.07999 * 123.35445 * 359.97438 * 4 3 2 34 34 H 0.96994 * 119.99646 * 0.02562 * 8 6 5 35 35 H 1.08997 * 109.47048 * 60.00248 * 9 8 6 36 36 H 1.09002 * 109.47401 * 300.00362 * 9 8 6 37 37 H 1.09006 * 113.61547 * 25.50707 * 12 10 9 38 38 H 1.09005 * 113.61078 * 254.61127 * 12 10 9 39 39 H 0.97008 * 119.99482 * 335.00289 * 15 13 12 40 40 H 0.96993 * 120.00105 * 359.97438 * 19 18 16 41 41 H 1.08997 * 113.61314 * 105.46596 * 24 10 9 42 42 H 1.08997 * 113.61718 * 334.55888 * 24 10 9 43 43 H 1.09003 * 109.47269 * 179.97438 * 27 26 3 44 44 H 1.08998 * 109.47111 * 300.00111 * 27 26 3 45 45 H 1.09005 * 109.46725 * 60.00105 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3679 2.0845 -1.1562 5 6 2.8046 3.3611 -0.9393 6 6 3.2325 4.3016 -1.9789 7 8 3.2208 3.9631 -3.1479 8 7 3.6390 5.5412 -1.6403 9 6 4.0672 6.4811 -2.6794 10 6 4.4758 7.8057 -2.0318 11 1 5.0855 7.6699 -1.1387 12 6 5.0582 8.8237 -3.0265 13 6 4.2728 9.9021 -2.2616 14 1 3.8178 10.6521 -2.9085 15 7 5.0177 10.4900 -1.1455 16 6 4.7109 11.7499 -0.7056 17 1 3.9195 12.3101 -1.1811 18 6 5.4164 12.3066 0.3523 19 7 6.3807 11.6237 0.9322 20 14 4.9984 14.0256 0.9520 21 1 3.9619 13.9417 2.0122 22 1 4.4821 14.8336 -0.1820 23 1 6.2187 14.6683 1.5025 24 6 3.3058 8.7845 -1.8362 25 16 2.7636 3.6972 0.7861 26 6 2.1789 2.1306 1.1249 27 6 1.8693 1.6148 2.5066 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2969 1.6401 -2.1380 34 1 3.6487 5.8108 -0.7086 35 1 3.2452 6.6540 -3.3739 36 1 4.9171 6.0635 -3.2191 37 1 4.7157 8.6783 -4.0511 38 1 6.1398 8.9365 -2.9526 39 1 5.7284 9.9866 -0.7182 40 1 6.5980 10.7312 0.6206 41 1 2.9729 8.8657 -0.8015 42 1 2.4843 8.6283 -2.5353 43 1 2.0769 2.3938 3.2402 44 1 0.8177 1.3337 2.5623 45 1 2.4899 0.7437 2.7167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086548317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:01 Heat of formation + Delta-G solvation = 6.902044 kcal Electronic energy + Delta-G solvation = -23840.582594 eV Core-core repulsion = 20370.833077 eV Total energy + Delta-G solvation = -3469.749517 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.00102 -39.03221 -38.38209 -34.80628 -33.55496 -33.19215 -31.90609 -30.09114 -28.25618 -26.56578 -25.16584 -24.29521 -23.74976 -23.13322 -21.77590 -20.67769 -19.06749 -18.60368 -18.03212 -17.40425 -16.65062 -15.87189 -15.51716 -15.19779 -15.00164 -14.59284 -14.47358 -14.22305 -13.77185 -13.67035 -13.59078 -13.55640 -13.26855 -13.04773 -12.73970 -12.36818 -12.29407 -12.06550 -11.95623 -11.75497 -11.50794 -11.33265 -10.98985 -10.94607 -10.76816 -10.41712 -10.26964 -10.01950 -9.94486 -9.71314 -9.22484 -9.14611 -8.91759 -8.86545 -8.66578 -7.09703 -6.15635 -3.16078 0.26363 1.20000 1.60909 2.07939 3.05862 3.08725 3.49423 3.53960 3.68129 4.39998 4.50069 4.62041 4.68595 4.76489 4.89369 4.94553 4.97546 4.98382 5.10895 5.12318 5.24980 5.28232 5.44175 5.44369 5.49437 5.52999 5.55329 5.56350 5.69047 5.78483 5.84476 5.86935 5.95406 6.04531 6.11973 6.16432 6.25105 6.28831 6.48443 6.63278 6.76499 6.92220 7.36440 7.79019 8.05147 8.70013 9.16964 10.03121 10.17588 11.32430 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.002351 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.484472 B =11905.017541 C =13018.125732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.123 4.123 4 C -0.047 4.047 5 C -0.268 4.268 6 C 0.588 3.412 7 O -0.536 6.536 8 N -0.720 5.720 9 C 0.132 3.868 10 C -0.121 4.121 11 H 0.091 0.909 12 C -0.148 4.148 13 C 0.173 3.827 14 H 0.064 0.936 15 N -0.717 5.717 16 C -0.333 4.333 17 H 0.067 0.933 18 C -0.045 4.045 19 N -0.943 5.943 20 Si 1.083 2.917 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.288 1.288 24 C -0.168 4.168 25 S 0.205 5.795 26 C -0.196 4.196 27 C -0.084 4.084 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.399 0.601 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.368 0.632 40 H 0.255 0.745 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -23.607 -0.073 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 C -0.135 4.135 4 C -0.080 4.080 5 C -0.388 4.388 6 C 0.374 3.626 7 O -0.415 6.415 8 N -0.371 5.371 9 C 0.010 3.990 10 C -0.140 4.140 11 H 0.109 0.891 12 C -0.187 4.187 13 C 0.061 3.939 14 H 0.082 0.918 15 N -0.357 5.357 16 C -0.464 4.464 17 H 0.085 0.915 18 C -0.242 4.242 19 N -0.588 5.588 20 Si 0.914 3.086 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.214 1.214 24 C -0.209 4.209 25 S 0.474 5.526 26 C -0.316 4.316 27 C -0.142 4.142 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.169 0.831 34 H 0.234 0.766 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.511 -21.149 1.010 23.212 hybrid contribution -0.580 -2.554 -1.388 2.964 sum -10.091 -23.703 -0.378 25.764 Atomic orbital electron populations 1.21738 0.94767 1.01676 1.02304 1.20226 0.95996 0.91073 1.02871 1.18631 1.05060 0.98551 0.91308 1.20585 0.95869 0.91801 0.99751 1.24537 1.16593 1.00422 0.97252 1.16960 0.77177 0.81151 0.87273 1.90817 1.54900 1.77266 1.18478 1.45949 1.66847 1.12968 1.11300 1.21521 0.99613 0.88116 0.89799 1.22725 0.99833 0.91680 0.99763 0.89110 1.23458 1.00674 0.96767 0.97829 1.20980 0.91628 0.91643 0.89692 0.91776 1.42180 1.40343 1.16622 1.36549 1.20117 1.17800 0.92543 1.15969 0.91522 1.25810 0.96664 1.05990 0.95768 1.70860 1.31326 1.12897 1.43736 0.83184 0.75588 0.74369 0.75438 1.22279 1.22087 1.21362 1.23893 0.96512 0.98724 1.01793 1.83182 1.60048 1.10660 0.98672 1.24051 1.07646 0.99443 1.00421 1.20384 1.02600 1.01459 0.89769 0.92441 0.92319 0.92622 0.90887 0.90968 0.83144 0.76649 0.91198 0.91480 0.90206 0.91414 0.79877 0.93394 0.91534 0.91168 0.91209 0.90262 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.06 -0.42 5.83 -27.88 -0.16 -0.58 16 3 C -0.12 -1.12 5.04 -106.45 -0.54 -1.66 16 4 C -0.05 -0.52 9.78 -40.43 -0.40 -0.91 16 5 C -0.27 -3.26 6.45 -36.79 -0.24 -3.50 16 6 C 0.59 8.53 7.78 -12.90 -0.10 8.43 16 7 O -0.54 -9.37 16.84 5.18 0.09 -9.28 16 8 N -0.72 -9.59 5.55 -61.65 -0.34 -9.93 16 9 C 0.13 1.82 5.51 -4.04 -0.02 1.80 16 10 C -0.12 -1.82 3.63 -89.80 -0.33 -2.14 16 11 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 12 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 13 C 0.17 3.39 4.56 -67.12 -0.31 3.08 16 14 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 15 N -0.72 -17.58 5.31 -52.64 -0.28 -17.86 16 16 C -0.33 -9.25 9.97 -15.06 -0.15 -9.40 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 19 N -0.94 -28.77 13.70 55.49 0.76 -28.01 16 20 Si 1.08 25.69 29.92 -169.99 -5.09 20.60 16 21 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.17 -2.82 7.43 -25.91 -0.19 -3.01 16 25 S 0.20 2.01 22.08 -107.50 -2.37 -0.36 16 26 C -0.20 -1.71 6.28 -35.86 -0.23 -1.94 16 27 C -0.08 -0.51 9.44 36.01 0.34 -0.17 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.33 7.41 -51.93 -0.38 -0.05 16 31 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.07 0.41 7.45 -51.93 -0.39 0.02 16 33 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.40 4.81 7.59 -40.82 -0.31 4.50 16 35 H 0.07 0.98 7.85 -51.93 -0.41 0.58 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.37 9.25 6.73 -40.82 -0.27 8.97 16 40 H 0.25 7.63 6.77 -40.82 -0.28 7.35 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.06 7.90 -51.93 -0.41 0.65 16 43 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 44 H 0.08 0.40 7.41 -51.93 -0.38 0.02 16 45 H 0.08 0.40 7.92 -51.93 -0.41 -0.01 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -32.75 383.39 -10.79 -43.54 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.10 Total: 9.98 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.23 Total: -14.46 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.14 Total: -55.80 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.60 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.37 Total: -0.36 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.75 -10.79 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086548317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.441 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds