Wall clock time and date at job start Tue Mar 31 2020 13:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47269 * 2 1 4 4 C 1.37476 * 122.44846 * 265.29726 * 3 2 1 5 5 C 1.36649 * 113.29649 * 180.18219 * 4 3 2 6 6 C 1.46584 * 125.45858 * 179.83787 * 5 4 3 7 7 O 1.21706 * 119.99710 * 359.71131 * 6 5 4 8 8 N 1.34776 * 120.00082 * 179.71169 * 6 5 4 9 9 C 1.46500 * 119.99996 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46967 * 180.02562 * 9 8 6 11 11 H 1.08993 * 112.85129 * 43.80647 * 10 9 8 12 12 C 1.53783 * 113.61330 * 175.00389 * 10 9 8 13 13 C 1.53775 * 87.08490 * 140.06098 * 12 10 9 14 14 H 1.08992 * 113.61649 * 219.93466 * 13 12 10 15 15 N 1.46502 * 113.61436 * 89.11310 * 13 12 10 16 16 C 1.36930 * 120.00159 * 155.00234 * 15 13 12 17 17 H 1.08000 * 119.99841 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00182 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99887 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00212 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99941 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00122 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00115 * 20 18 16 24 24 C 1.53785 * 113.68612 * 272.53368 * 10 9 8 25 25 S 1.75826 * 109.08285 * 359.56808 * 5 4 3 26 26 C 1.33812 * 122.45168 * 84.99925 * 3 2 1 27 27 C 1.50700 * 124.52275 * 0.04367 * 26 3 2 28 28 H 1.09004 * 109.46973 * 59.99757 * 1 2 3 29 29 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47025 * 300.00207 * 1 2 3 31 31 H 1.09003 * 109.47025 * 239.99793 * 2 1 3 32 32 H 1.09000 * 109.47616 * 119.99890 * 2 1 3 33 33 H 1.07999 * 123.35445 * 359.97438 * 4 3 2 34 34 H 0.96994 * 119.99646 * 0.02562 * 8 6 5 35 35 H 1.08997 * 109.47048 * 60.00248 * 9 8 6 36 36 H 1.09002 * 109.47401 * 300.00362 * 9 8 6 37 37 H 1.09006 * 113.61547 * 25.50707 * 12 10 9 38 38 H 1.09005 * 113.61078 * 254.61127 * 12 10 9 39 39 H 0.97008 * 119.99482 * 335.00289 * 15 13 12 40 40 H 0.96993 * 120.00105 * 359.97438 * 19 18 16 41 41 H 1.08997 * 113.61314 * 105.46596 * 24 10 9 42 42 H 1.08997 * 113.61718 * 334.55888 * 24 10 9 43 43 H 1.09003 * 109.47269 * 179.97438 * 27 26 3 44 44 H 1.08998 * 109.47111 * 300.00111 * 27 26 3 45 45 H 1.09005 * 109.46725 * 60.00105 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3679 2.0845 -1.1562 5 6 2.8046 3.3611 -0.9393 6 6 3.2325 4.3016 -1.9789 7 8 3.2208 3.9631 -3.1479 8 7 3.6390 5.5412 -1.6403 9 6 4.0672 6.4811 -2.6794 10 6 4.4758 7.8057 -2.0318 11 1 5.0855 7.6699 -1.1387 12 6 5.0582 8.8237 -3.0265 13 6 4.2728 9.9021 -2.2616 14 1 3.8178 10.6521 -2.9085 15 7 5.0177 10.4900 -1.1455 16 6 4.7109 11.7499 -0.7056 17 1 3.9195 12.3101 -1.1811 18 6 5.4164 12.3066 0.3523 19 7 6.3807 11.6237 0.9322 20 14 4.9984 14.0256 0.9520 21 1 3.9619 13.9417 2.0122 22 1 4.4821 14.8336 -0.1820 23 1 6.2187 14.6683 1.5025 24 6 3.3058 8.7845 -1.8362 25 16 2.7636 3.6972 0.7861 26 6 2.1789 2.1306 1.1249 27 6 1.8693 1.6148 2.5066 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2969 1.6401 -2.1380 34 1 3.6487 5.8108 -0.7086 35 1 3.2452 6.6540 -3.3739 36 1 4.9171 6.0635 -3.2191 37 1 4.7157 8.6783 -4.0511 38 1 6.1398 8.9365 -2.9526 39 1 5.7284 9.9866 -0.7182 40 1 6.5980 10.7312 0.6206 41 1 2.9729 8.8657 -0.8015 42 1 2.4843 8.6283 -2.5353 43 1 2.0769 2.3938 3.2402 44 1 0.8177 1.3337 2.5623 45 1 2.4899 0.7437 2.7167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086548317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:00 Heat of formation + Delta-G solvation = -12.614870 kcal Electronic energy + Delta-G solvation = -23841.428911 eV Core-core repulsion = 20370.833077 eV Total energy + Delta-G solvation = -3470.595833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.11415 -40.16453 -39.43418 -36.29440 -35.24612 -33.90225 -32.48165 -31.89606 -29.43756 -27.54114 -26.55638 -25.60916 -24.89099 -24.26093 -23.04211 -21.67766 -20.22406 -19.74743 -19.35712 -18.91439 -17.63140 -16.91780 -16.78589 -16.59804 -16.28703 -15.73415 -15.43741 -15.30348 -15.09404 -15.08146 -14.68480 -14.52044 -14.16940 -13.75980 -13.61923 -13.44999 -13.31594 -13.01620 -12.92740 -12.81377 -12.65174 -12.56839 -12.42198 -11.95675 -11.85162 -11.81232 -11.65532 -11.61067 -11.37773 -11.27462 -10.98557 -10.83536 -10.30610 -9.67462 -9.41448 -9.12333 -8.40209 -5.34352 -0.57141 0.40886 0.83984 1.26923 1.58759 1.68991 1.83320 1.99975 2.06055 2.70246 3.37532 3.54386 3.60934 3.65097 3.78123 3.81944 3.95747 4.05773 4.12687 4.19929 4.27228 4.36564 4.50351 4.57708 4.60717 4.64376 4.66088 4.74032 4.82458 4.86853 4.92710 4.94402 4.98879 5.07033 5.11485 5.13858 5.21943 5.29429 5.36035 5.42790 5.47642 5.51772 5.65178 6.29032 6.48737 6.95934 7.08811 7.99200 8.09976 9.11521 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.002351 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.484472 B =11905.017541 C =13018.125732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.133 4.133 4 C -0.045 4.045 5 C -0.302 4.302 6 C 0.588 3.412 7 O -0.574 6.574 8 N -0.716 5.716 9 C 0.140 3.860 10 C -0.104 4.104 11 H 0.080 0.920 12 C -0.132 4.132 13 C 0.149 3.851 14 H 0.059 0.941 15 N -0.731 5.731 16 C -0.332 4.332 17 H 0.067 0.933 18 C -0.105 4.105 19 N -0.975 5.975 20 Si 1.130 2.870 21 H -0.284 1.284 22 H -0.274 1.274 23 H -0.294 1.294 24 C -0.154 4.154 25 S 0.212 5.788 26 C -0.185 4.185 27 C -0.087 4.087 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.361 0.639 40 H 0.244 0.756 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 -24.832 0.418 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.422 4.422 6 C 0.376 3.624 7 O -0.456 6.456 8 N -0.367 5.367 9 C 0.017 3.983 10 C -0.123 4.123 11 H 0.099 0.901 12 C -0.172 4.172 13 C 0.039 3.961 14 H 0.077 0.923 15 N -0.372 5.372 16 C -0.463 4.463 17 H 0.085 0.915 18 C -0.296 4.296 19 N -0.623 5.623 20 Si 0.955 3.045 21 H -0.211 1.211 22 H -0.199 1.199 23 H -0.220 1.220 24 C -0.194 4.194 25 S 0.482 5.518 26 C -0.305 4.305 27 C -0.145 4.145 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.165 0.835 34 H 0.241 0.759 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.193 0.807 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.855 -22.394 1.474 24.930 hybrid contribution -0.232 -2.255 -1.559 2.751 sum -11.088 -24.649 -0.085 27.028 Atomic orbital electron populations 1.21729 0.94267 1.02515 1.01795 1.20294 0.96336 0.89529 1.03833 1.18835 1.05237 0.99787 0.90595 1.20776 0.95081 0.91596 1.00463 1.24391 1.19015 1.00678 0.98112 1.17251 0.76471 0.81411 0.87292 1.90782 1.56745 1.77990 1.20063 1.45901 1.66465 1.12751 1.11548 1.21386 0.99796 0.87346 0.89741 1.22512 0.98537 0.92039 0.99184 0.90122 1.23354 0.99834 0.94860 0.99104 1.21308 0.93052 0.92730 0.89037 0.92317 1.42309 1.40916 1.16009 1.37916 1.20441 1.16907 0.93649 1.15304 0.91500 1.27190 0.96631 1.09195 0.96570 1.70966 1.33224 1.12974 1.45137 0.82588 0.75358 0.70722 0.75860 1.21132 1.19885 1.22016 1.23728 0.97082 0.97532 1.01101 1.83117 1.60117 1.11708 0.96864 1.24486 1.05737 0.98494 1.01748 1.20551 1.03814 1.02176 0.87930 0.93702 0.90826 0.92378 0.90650 0.89323 0.83544 0.75946 0.90880 0.91279 0.87322 0.92226 0.80662 0.94516 0.93458 0.88858 0.90631 0.88796 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 71.98 0.71 -0.76 16 2 C -0.06 -0.68 5.83 29.85 0.17 -0.51 16 3 C -0.13 -2.22 5.04 -21.05 -0.11 -2.33 16 4 C -0.04 -0.98 9.78 21.72 0.21 -0.76 16 5 C -0.30 -7.33 6.45 24.08 0.16 -7.18 16 6 C 0.59 17.11 7.78 86.42 0.67 17.78 16 7 O -0.57 -20.33 16.84 -4.37 -0.07 -20.40 16 8 N -0.72 -18.81 5.55 -467.17 -2.59 -21.40 16 9 C 0.14 3.71 5.51 86.38 0.48 4.19 16 10 C -0.10 -3.02 3.63 -10.27 -0.04 -3.06 16 11 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 12 C -0.13 -4.06 7.39 31.12 0.23 -3.83 16 13 C 0.15 5.76 4.56 45.52 0.21 5.96 16 14 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 15 N -0.73 -36.29 5.31 -320.45 -1.70 -37.99 16 16 C -0.33 -18.51 9.97 84.03 0.84 -17.68 16 17 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 18 C -0.10 -6.04 5.50 84.86 0.47 -5.58 16 19 N -0.98 -60.56 13.70 21.65 0.30 -60.27 16 20 Si 1.13 51.71 29.92 68.60 2.05 53.77 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 C -0.15 -5.01 7.43 31.12 0.23 -4.78 16 25 S 0.21 3.98 22.08 -56.49 -1.25 2.73 16 26 C -0.18 -2.88 6.28 24.68 0.15 -2.72 16 27 C -0.09 -0.79 9.44 71.24 0.67 -0.12 16 28 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.55 7.41 -2.39 -0.02 0.54 16 31 H 0.07 0.82 8.11 -2.39 -0.02 0.80 16 32 H 0.09 0.72 7.45 -2.39 -0.02 0.70 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.41 9.64 7.59 -92.71 -0.70 8.93 16 35 H 0.07 1.93 7.85 -2.39 -0.02 1.91 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.11 2.74 8.10 -2.38 -0.02 2.72 16 38 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.36 18.63 6.73 -92.70 -0.62 18.01 16 40 H 0.24 15.08 6.77 -92.71 -0.63 14.45 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 2.63 7.90 -2.39 -0.02 2.61 16 43 H 0.07 0.63 8.11 -2.39 -0.02 0.61 16 44 H 0.09 0.64 7.41 -2.39 -0.02 0.62 16 45 H 0.10 0.62 7.92 -2.38 -0.02 0.60 16 Total: -1.00 -71.25 383.39 1.61 -69.64 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.18 Total: 35.27 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 5.06 Total: -21.36 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.00 Total: -119.66 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.07 Total: -20.40 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.77 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.25 Total: 2.73 kcal Total: -71.25 1.61 -69.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086548317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.027 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds