Wall clock time and date at job start Tue Mar 31 2020 13:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.50701 * 109.47184 * 119.99777 * 2 1 3 5 5 C 1.37470 * 123.35460 * 294.59123 * 4 2 1 6 6 C 1.33817 * 115.10382 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95102 * 359.97438 * 6 5 4 8 8 C 1.36645 * 123.34832 * 114.29278 * 4 2 1 9 9 C 1.46585 * 125.46050 * 0.02562 * 8 4 2 10 10 O 1.21698 * 119.99901 * 5.63452 * 9 8 4 11 11 N 1.34774 * 120.00138 * 185.62516 * 9 8 4 12 12 C 1.46495 * 120.00017 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47218 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.84890 * 314.66552 * 13 12 11 15 15 C 1.53779 * 113.61283 * 85.86720 * 13 12 11 16 16 C 1.53956 * 87.01702 * 139.95499 * 15 13 12 17 17 H 1.09007 * 113.74182 * 220.05748 * 16 15 13 18 18 N 1.46494 * 113.54037 * 89.18774 * 16 15 13 19 19 C 1.36942 * 120.00067 * 107.50051 * 18 16 15 20 20 H 1.07998 * 119.99665 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00190 * 179.97438 * 19 18 16 22 22 N 1.31611 * 120.00310 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99813 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47218 * 89.99655 * 23 21 19 25 25 H 1.48505 * 109.47341 * 209.99322 * 23 21 19 26 26 H 1.48498 * 109.47183 * 329.99261 * 23 21 19 27 27 C 1.53779 * 87.11358 * 334.63437 * 16 15 13 28 28 H 1.08998 * 109.47360 * 59.99574 * 1 2 3 29 29 H 1.09003 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47176 * 300.00138 * 1 2 3 31 31 H 1.08993 * 109.47105 * 240.00108 * 2 1 3 32 32 H 1.08996 * 109.46902 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47080 * 299.99963 * 3 2 1 34 34 H 1.09002 * 109.47243 * 59.99904 * 3 2 1 35 35 H 1.08007 * 122.44976 * 359.93751 * 5 4 2 36 36 H 1.07997 * 124.52415 * 180.02562 * 6 5 4 37 37 H 0.96997 * 120.00215 * 0.02562 * 11 9 8 38 38 H 1.08994 * 109.47486 * 300.00761 * 12 11 9 39 39 H 1.09007 * 109.47226 * 60.00937 * 12 11 9 40 40 H 1.08996 * 113.61255 * 254.52725 * 15 13 12 41 41 H 1.08997 * 113.61448 * 25.43632 * 15 13 12 42 42 H 0.96998 * 120.00162 * 287.50324 * 18 16 15 43 43 H 0.96996 * 120.00570 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.61588 * 270.82141 * 27 16 15 45 45 H 1.09000 * 113.69145 * 139.92422 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8338 -0.2420 2.5076 6 6 2.3501 -1.0045 3.4786 7 16 3.1271 -2.3772 2.8283 8 6 2.7255 -1.8872 1.1881 9 6 3.0794 -2.6223 -0.0297 10 8 2.8425 -2.1405 -1.1218 11 7 3.6674 -3.8317 0.0600 12 6 4.0206 -4.5665 -1.1571 13 6 4.6690 -5.8996 -0.7779 14 1 5.4162 -5.7981 0.0091 15 6 3.6550 -7.0273 -0.5232 16 6 4.6317 -7.9625 -1.2591 17 1 4.1411 -8.6790 -1.9179 18 7 5.6215 -8.5859 -0.3772 19 6 5.5239 -9.9171 -0.0711 20 1 4.7174 -10.5074 -0.4803 21 6 6.4621 -10.5078 0.7641 22 7 6.3680 -11.7871 1.0587 23 14 7.8574 -9.4868 1.4712 24 1 7.4350 -8.9031 2.7697 25 1 9.0466 -10.3512 1.6806 26 1 8.2000 -8.3944 0.5254 27 6 5.1558 -6.7141 -1.9881 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.3006 0.6746 2.7123 36 1 2.2832 -0.7811 4.5331 37 1 3.8561 -4.2158 0.9305 38 1 3.1206 -4.7541 -1.7424 39 1 4.7215 -3.9763 -1.7474 40 1 3.5278 -7.2700 0.5317 41 1 2.7075 -6.8884 -1.0439 42 1 6.3461 -8.0557 -0.0100 43 1 7.0233 -12.1999 1.6426 44 1 4.6193 -6.4893 -2.9100 45 1 6.2384 -6.7031 -2.1149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086557455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:05 Heat of formation + Delta-G solvation = 17.758340 kcal Electronic energy + Delta-G solvation = -24331.387248 eV Core-core repulsion = 20862.108496 eV Total energy + Delta-G solvation = -3469.278752 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24755 -39.03515 -38.16887 -34.86485 -34.26819 -33.26901 -30.87649 -30.11267 -27.60654 -27.34182 -25.22403 -24.91363 -23.45817 -22.12930 -21.81534 -21.31288 -19.35550 -18.41228 -17.89306 -17.66038 -16.50723 -15.96160 -15.63216 -15.37593 -14.87808 -14.50033 -14.39457 -14.03203 -13.86088 -13.79221 -13.57633 -13.41299 -12.91901 -12.83040 -12.69632 -12.51657 -12.32880 -12.06937 -11.74084 -11.60296 -11.39572 -11.35469 -11.23949 -10.94521 -10.92653 -10.54928 -10.29706 -10.10168 -9.78453 -9.67300 -9.55305 -9.28115 -8.98517 -8.93537 -8.74381 -7.33634 -5.82607 -3.18979 0.25024 1.20638 1.60180 2.10597 3.00227 3.06144 3.32359 3.34735 3.40880 4.49153 4.53128 4.58523 4.70510 4.84197 4.89564 4.92007 5.00776 5.05425 5.09238 5.35140 5.36065 5.39489 5.40462 5.43877 5.47017 5.60506 5.70937 5.71606 5.80163 5.83458 5.86501 5.88016 6.03821 6.05691 6.09421 6.19649 6.23234 6.43613 6.47603 6.59178 6.70262 6.85817 7.33040 7.95249 8.03234 8.37037 9.14733 9.86937 10.06065 11.35485 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019462 B = 0.002648 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.384006 B =10572.175504 C =11437.554447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.069 4.069 3 C -0.138 4.138 4 C -0.010 4.010 5 C -0.145 4.145 6 C -0.229 4.229 7 S 0.199 5.801 8 C -0.272 4.272 9 C 0.591 3.409 10 O -0.529 6.529 11 N -0.720 5.720 12 C 0.132 3.868 13 C -0.125 4.125 14 H 0.089 0.911 15 C -0.167 4.167 16 C 0.173 3.827 17 H 0.072 0.928 18 N -0.730 5.730 19 C -0.247 4.247 20 H 0.092 0.908 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.148 4.148 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.399 0.601 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.082 0.918 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 26.496 1.909 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.196 4.196 4 C -0.026 4.026 5 C -0.177 4.177 6 C -0.366 4.366 7 S 0.468 5.532 8 C -0.393 4.393 9 C 0.377 3.623 10 O -0.409 6.409 11 N -0.371 5.371 12 C 0.009 3.991 13 C -0.144 4.144 14 H 0.108 0.892 15 C -0.208 4.208 16 C 0.061 3.939 17 H 0.090 0.910 18 N -0.370 5.370 19 C -0.377 4.377 20 H 0.110 0.890 21 C -0.190 4.190 22 N -0.579 5.579 23 Si 0.713 3.287 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.203 1.203 27 C -0.187 4.187 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.161 0.839 36 H 0.186 0.814 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.034 25.261 1.818 26.890 hybrid contribution 0.367 1.774 0.835 1.995 sum -8.667 27.035 2.653 28.514 Atomic orbital electron populations 1.21765 0.94247 1.01904 1.01581 1.20424 0.95812 0.95939 0.96698 1.21785 1.01169 0.95034 1.01606 1.19481 0.94772 0.92392 0.95935 1.19868 1.04294 1.02445 0.91047 1.25265 1.05846 1.00903 1.04619 1.83194 1.51751 1.22156 0.96133 1.24454 1.14230 1.03335 0.97235 1.16927 0.77353 0.80729 0.87261 1.90685 1.54747 1.67772 1.27684 1.45965 1.61718 1.18659 1.10712 1.21517 0.99789 0.91854 0.85897 1.22775 0.99534 0.92042 1.00053 0.89234 1.23894 0.97355 0.97202 1.02346 1.21034 0.90081 0.91468 0.91278 0.91022 1.42519 1.29627 1.08523 1.56335 1.19112 1.10466 0.83961 1.24128 0.89012 1.24680 0.98728 0.95671 0.99952 1.69690 1.37686 1.09962 1.40550 0.86571 0.83062 0.79754 0.79274 1.21032 1.21641 1.20309 1.23456 1.01198 0.97575 0.96498 0.92157 0.92677 0.92970 0.86033 0.92694 0.92188 0.92940 0.83933 0.81407 0.76660 0.91059 0.91467 0.91267 0.90868 0.80525 0.92966 0.89934 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.09 37.16 0.34 -0.84 16 2 C -0.07 -0.69 3.07 -91.77 -0.28 -0.97 16 3 C -0.14 -1.14 8.99 37.16 0.33 -0.81 16 4 C -0.01 -0.11 4.72 -105.48 -0.50 -0.61 16 5 C -0.15 -1.23 9.18 -41.41 -0.38 -1.61 16 6 C -0.23 -1.79 10.92 29.18 0.32 -1.47 16 7 S 0.20 1.78 22.17 -107.50 -2.38 -0.61 16 8 C -0.27 -3.11 6.45 -36.79 -0.24 -3.35 16 9 C 0.59 7.84 7.77 -12.90 -0.10 7.74 16 10 O -0.53 -8.25 14.00 5.19 0.07 -8.18 16 11 N -0.72 -8.73 5.55 -61.65 -0.34 -9.07 16 12 C 0.13 1.65 5.50 -4.04 -0.02 1.63 16 13 C -0.13 -1.71 3.62 -89.80 -0.33 -2.03 16 14 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.17 -2.58 7.44 -25.83 -0.19 -2.77 16 16 C 0.17 3.16 4.57 -67.03 -0.31 2.85 16 17 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 18 N -0.73 -16.62 5.11 -52.55 -0.27 -16.89 16 19 C -0.25 -6.80 10.45 -15.06 -0.16 -6.96 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 21 C 0.01 0.16 5.50 -17.44 -0.10 0.07 16 22 N -0.93 -28.82 13.97 55.49 0.78 -28.04 16 23 Si 0.88 21.57 27.74 -169.99 -4.71 16.85 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 27 C -0.15 -2.15 7.39 -25.92 -0.19 -2.34 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.38 8.00 -51.93 -0.42 -0.03 16 31 H 0.12 1.54 4.96 -51.93 -0.26 1.28 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.36 7.49 -51.93 -0.39 -0.03 16 35 H 0.14 0.94 7.66 -52.48 -0.40 0.54 16 36 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.40 4.35 7.61 -40.82 -0.31 4.03 16 38 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 42 H 0.36 8.07 5.76 -40.82 -0.24 7.84 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -31.72 376.96 -10.05 -41.77 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.07 Total: 9.97 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.80 Total: -11.48 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.16 Total: -54.00 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.07 Total: -8.18 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.38 Total: -0.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.72 -10.05 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086557455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.526 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds