Wall clock time and date at job start Tue Mar 31 2020 13:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.50701 * 109.47184 * 119.99777 * 2 1 3 5 5 C 1.37470 * 123.35460 * 294.59123 * 4 2 1 6 6 C 1.33817 * 115.10382 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95102 * 359.97438 * 6 5 4 8 8 C 1.36645 * 123.34832 * 114.29278 * 4 2 1 9 9 C 1.46585 * 125.46050 * 0.02562 * 8 4 2 10 10 O 1.21698 * 119.99901 * 5.63452 * 9 8 4 11 11 N 1.34774 * 120.00138 * 185.62516 * 9 8 4 12 12 C 1.46495 * 120.00017 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47218 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.84890 * 314.66552 * 13 12 11 15 15 C 1.53779 * 113.61283 * 85.86720 * 13 12 11 16 16 C 1.53956 * 87.01702 * 139.95499 * 15 13 12 17 17 H 1.09007 * 113.74182 * 220.05748 * 16 15 13 18 18 N 1.46494 * 113.54037 * 89.18774 * 16 15 13 19 19 C 1.36942 * 120.00067 * 107.50051 * 18 16 15 20 20 H 1.07998 * 119.99665 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00190 * 179.97438 * 19 18 16 22 22 N 1.31611 * 120.00310 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99813 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47218 * 89.99655 * 23 21 19 25 25 H 1.48505 * 109.47341 * 209.99322 * 23 21 19 26 26 H 1.48498 * 109.47183 * 329.99261 * 23 21 19 27 27 C 1.53779 * 87.11358 * 334.63437 * 16 15 13 28 28 H 1.08998 * 109.47360 * 59.99574 * 1 2 3 29 29 H 1.09003 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47176 * 300.00138 * 1 2 3 31 31 H 1.08993 * 109.47105 * 240.00108 * 2 1 3 32 32 H 1.08996 * 109.46902 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47080 * 299.99963 * 3 2 1 34 34 H 1.09002 * 109.47243 * 59.99904 * 3 2 1 35 35 H 1.08007 * 122.44976 * 359.93751 * 5 4 2 36 36 H 1.07997 * 124.52415 * 180.02562 * 6 5 4 37 37 H 0.96997 * 120.00215 * 0.02562 * 11 9 8 38 38 H 1.08994 * 109.47486 * 300.00761 * 12 11 9 39 39 H 1.09007 * 109.47226 * 60.00937 * 12 11 9 40 40 H 1.08996 * 113.61255 * 254.52725 * 15 13 12 41 41 H 1.08997 * 113.61448 * 25.43632 * 15 13 12 42 42 H 0.96998 * 120.00162 * 287.50324 * 18 16 15 43 43 H 0.96996 * 120.00570 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.61588 * 270.82141 * 27 16 15 45 45 H 1.09000 * 113.69145 * 139.92422 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8338 -0.2420 2.5076 6 6 2.3501 -1.0045 3.4786 7 16 3.1271 -2.3772 2.8283 8 6 2.7255 -1.8872 1.1881 9 6 3.0794 -2.6223 -0.0297 10 8 2.8425 -2.1405 -1.1218 11 7 3.6674 -3.8317 0.0600 12 6 4.0206 -4.5665 -1.1571 13 6 4.6690 -5.8996 -0.7779 14 1 5.4162 -5.7981 0.0091 15 6 3.6550 -7.0273 -0.5232 16 6 4.6317 -7.9625 -1.2591 17 1 4.1411 -8.6790 -1.9179 18 7 5.6215 -8.5859 -0.3772 19 6 5.5239 -9.9171 -0.0711 20 1 4.7174 -10.5074 -0.4803 21 6 6.4621 -10.5078 0.7641 22 7 6.3680 -11.7871 1.0587 23 14 7.8574 -9.4868 1.4712 24 1 7.4350 -8.9031 2.7697 25 1 9.0466 -10.3512 1.6806 26 1 8.2000 -8.3944 0.5254 27 6 5.1558 -6.7141 -1.9881 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.3006 0.6746 2.7123 36 1 2.2832 -0.7811 4.5331 37 1 3.8561 -4.2158 0.9305 38 1 3.1206 -4.7541 -1.7424 39 1 4.7215 -3.9763 -1.7474 40 1 3.5278 -7.2700 0.5317 41 1 2.7075 -6.8884 -1.0439 42 1 6.3461 -8.0557 -0.0100 43 1 7.0233 -12.1999 1.6426 44 1 4.6193 -6.4893 -2.9100 45 1 6.2384 -6.7031 -2.1149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086557455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:04 Heat of formation + Delta-G solvation = -1.720155 kcal Electronic energy + Delta-G solvation = -24332.231899 eV Core-core repulsion = 20862.108496 eV Total energy + Delta-G solvation = -3470.123403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19105 -40.19202 -39.10190 -36.11593 -35.13256 -34.84944 -32.71564 -31.06349 -28.74202 -27.98905 -26.47633 -25.91285 -25.11574 -23.29192 -22.69684 -22.22407 -20.51055 -19.68731 -19.53340 -18.64035 -17.34671 -16.91814 -16.72618 -16.52228 -16.14458 -16.07652 -15.25096 -15.13280 -15.06884 -14.67562 -14.63174 -14.43502 -14.41729 -14.04364 -13.50636 -13.43260 -13.32496 -13.11547 -13.02176 -12.94034 -12.68040 -12.38985 -12.25088 -12.06057 -12.04745 -11.88138 -11.64943 -11.61391 -11.47995 -11.00073 -10.89638 -10.63639 -10.24855 -9.74885 -9.41833 -9.29982 -8.02676 -5.36455 -0.48640 0.50346 0.93439 1.37586 1.39097 1.41192 1.48587 2.07640 2.14647 2.48060 3.27665 3.50475 3.67361 3.72232 3.83631 3.90093 3.96556 4.03968 4.25908 4.26950 4.31738 4.35072 4.43764 4.67821 4.69046 4.73321 4.79597 4.80488 4.92137 4.95738 4.97443 5.03957 5.07114 5.13338 5.20512 5.24748 5.30666 5.37819 5.38520 5.44182 5.52619 5.68921 5.80717 6.22608 6.38918 7.07711 7.07889 7.84525 8.03141 9.18823 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019462 B = 0.002648 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.384006 B =10572.175504 C =11437.554447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C -0.134 4.134 4 C -0.011 4.011 5 C -0.155 4.155 6 C -0.214 4.214 7 S 0.210 5.790 8 C -0.309 4.309 9 C 0.587 3.413 10 O -0.561 6.561 11 N -0.717 5.717 12 C 0.140 3.860 13 C -0.108 4.108 14 H 0.089 0.911 15 C -0.156 4.156 16 C 0.146 3.854 17 H 0.058 0.942 18 N -0.734 5.734 19 C -0.232 4.232 20 H 0.056 0.944 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.955 3.045 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.251 1.251 27 C -0.131 4.131 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.166 0.834 36 H 0.198 0.802 37 H 0.405 0.595 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.367 0.633 43 H 0.258 0.742 44 H 0.108 0.892 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 29.817 2.973 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 C -0.191 4.191 4 C -0.028 4.028 5 C -0.185 4.185 6 C -0.352 4.352 7 S 0.479 5.521 8 C -0.429 4.429 9 C 0.375 3.625 10 O -0.443 6.443 11 N -0.368 5.368 12 C 0.017 3.983 13 C -0.127 4.127 14 H 0.107 0.893 15 C -0.196 4.196 16 C 0.037 3.963 17 H 0.077 0.923 18 N -0.375 5.375 19 C -0.363 4.363 20 H 0.074 0.926 21 C -0.257 4.257 22 N -0.635 5.635 23 Si 0.782 3.218 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.175 1.175 27 C -0.170 4.170 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.183 0.817 36 H 0.215 0.785 37 H 0.241 0.759 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.200 0.800 43 H 0.067 0.933 44 H 0.126 0.874 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.079 28.630 2.860 30.172 hybrid contribution 0.240 0.733 0.465 0.901 sum -8.840 29.364 3.325 30.845 Atomic orbital electron populations 1.21732 0.93196 1.01294 1.02824 1.20390 0.96691 0.96664 0.95546 1.21751 1.00448 0.94028 1.02877 1.19747 0.94040 0.92035 0.96941 1.20048 1.04882 1.03485 0.90121 1.25674 1.03908 0.99590 1.05987 1.83125 1.51738 1.22744 0.94528 1.24402 1.16389 1.04296 0.97783 1.17226 0.76839 0.80777 0.87622 1.90673 1.56088 1.68521 1.29016 1.45920 1.61494 1.18479 1.10881 1.21376 0.99690 0.91135 0.86092 1.22604 0.98592 0.91988 0.99483 0.89259 1.23749 0.98005 0.96760 1.01102 1.21368 0.90560 0.92665 0.91707 0.92348 1.42440 1.30944 1.06832 1.57322 1.19063 1.08788 0.85790 1.22671 0.92557 1.25521 1.02066 0.96905 1.01171 1.69880 1.39151 1.12244 1.42182 0.85410 0.78884 0.78472 0.79026 1.20180 1.22455 1.17512 1.23349 1.01463 0.94687 0.97543 0.91389 0.94180 0.91239 0.88996 0.93762 0.91468 0.91113 0.81693 0.78460 0.75948 0.91124 0.91176 0.92839 0.89082 0.79971 0.93335 0.87402 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.09 71.98 0.65 -1.46 16 2 C -0.07 -1.40 3.07 -11.54 -0.04 -1.44 16 3 C -0.13 -1.99 8.99 71.98 0.65 -1.35 16 4 C -0.01 -0.22 4.72 -20.42 -0.10 -0.32 16 5 C -0.15 -2.19 9.18 21.08 0.19 -2.00 16 6 C -0.21 -2.66 10.92 66.81 0.73 -1.93 16 7 S 0.21 3.34 22.17 -56.49 -1.25 2.09 16 8 C -0.31 -6.78 6.45 24.08 0.16 -6.62 16 9 C 0.59 15.37 7.77 86.42 0.67 16.04 16 10 O -0.56 -17.68 14.00 -4.34 -0.06 -17.74 16 11 N -0.72 -16.59 5.55 -467.18 -2.59 -19.18 16 12 C 0.14 3.25 5.50 86.38 0.47 3.72 16 13 C -0.11 -2.72 3.62 -10.27 -0.04 -2.76 16 14 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.16 -4.61 7.44 31.18 0.23 -4.38 16 16 C 0.15 5.23 4.57 45.58 0.21 5.44 16 17 H 0.06 2.22 8.10 -2.38 -0.02 2.20 16 18 N -0.73 -33.02 5.11 -320.17 -1.64 -34.66 16 19 C -0.23 -13.05 10.45 84.03 0.88 -12.17 16 20 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 21 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 22 N -0.98 -62.77 13.97 21.65 0.30 -62.47 16 23 Si 0.96 44.53 27.74 68.60 1.90 46.44 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 27 C -0.13 -3.53 7.39 31.12 0.23 -3.30 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.85 8.00 -2.39 -0.02 0.83 16 31 H 0.09 2.38 4.96 -2.39 -0.01 2.37 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.78 7.49 -2.39 -0.02 0.77 16 35 H 0.17 1.54 7.66 -2.91 -0.02 1.52 16 36 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.41 8.28 7.61 -92.71 -0.71 7.58 16 38 H 0.07 1.68 7.87 -2.39 -0.02 1.66 16 39 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 2.38 7.92 -2.39 -0.02 2.37 16 42 H 0.37 15.69 5.76 -92.71 -0.53 15.16 16 43 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.11 2.39 8.10 -2.39 -0.02 2.37 16 45 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -70.99 376.96 1.74 -69.25 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -0.30 Total: 32.11 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 5.37 Total: -15.85 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -3.93 Total: -116.31 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.06 Total: -17.74 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.44 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.25 Total: 2.09 kcal Total: -70.99 1.74 -69.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086557455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.535 kcal (2) G-P(sol) polarization free energy of solvation -70.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds