Wall clock time and date at job start Tue Mar 31 2020 13:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47359 * 2 1 4 4 C 1.50702 * 109.46875 * 120.00689 * 2 1 3 5 5 C 1.33812 * 124.52098 * 120.00010 * 4 2 1 6 6 C 1.37474 * 115.09796 * 179.76414 * 5 4 2 7 7 C 1.36650 * 113.29743 * 0.45898 * 6 5 4 8 8 C 1.46580 * 125.45913 * 179.83891 * 7 6 5 9 9 O 1.21703 * 120.00006 * 359.71501 * 8 7 6 10 10 N 1.34776 * 120.00118 * 179.71039 * 8 7 6 11 11 C 1.46497 * 120.00004 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47173 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84791 * 45.33545 * 12 11 10 14 14 C 1.53781 * 113.61570 * 176.53083 * 12 11 10 15 15 C 1.53780 * 87.07624 * 139.98161 * 14 12 11 16 16 H 1.09010 * 113.61089 * 219.92895 * 15 14 12 17 17 N 1.46502 * 113.61568 * 89.12132 * 15 14 12 18 18 C 1.36932 * 120.00391 * 154.99391 * 17 15 14 19 19 H 1.08001 * 119.99778 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00137 * 179.97438 * 18 17 15 21 21 N 1.31623 * 120.00092 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47287 * 89.99722 * 22 20 18 24 24 H 1.48502 * 109.47385 * 210.00217 * 22 20 18 25 25 H 1.48507 * 109.47078 * 329.99801 * 22 20 18 26 26 C 1.53780 * 113.61448 * 274.14228 * 12 11 10 27 27 S 1.70610 * 124.52095 * 300.01661 * 4 2 1 28 28 H 1.08992 * 109.46654 * 300.00077 * 1 2 3 29 29 H 1.09001 * 109.46776 * 59.99476 * 1 2 3 30 30 H 1.08997 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46909 * 240.00262 * 2 1 3 32 32 H 1.08999 * 109.47253 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47286 * 300.00224 * 3 2 1 34 34 H 1.09004 * 109.46896 * 60.00254 * 3 2 1 35 35 H 1.08000 * 122.45697 * 0.03865 * 5 4 2 36 36 H 1.08005 * 123.35224 * 180.27149 * 6 5 4 37 37 H 0.97002 * 119.99738 * 0.02562 * 10 8 7 38 38 H 1.09006 * 109.47301 * 60.00545 * 11 10 8 39 39 H 1.08996 * 109.47804 * 300.00196 * 11 10 8 40 40 H 1.08994 * 113.60887 * 254.53194 * 14 12 11 41 41 H 1.08997 * 113.61223 * 25.43567 * 14 12 11 42 42 H 0.97003 * 119.99493 * 334.99399 * 17 15 14 43 43 H 0.96996 * 120.00091 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.61461 * 334.56153 * 26 12 11 45 45 H 1.08995 * 113.61894 * 105.46890 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 2.8048 -1.8031 1.2129 6 6 3.1549 -2.2895 2.4502 7 6 2.6340 -1.5631 3.4837 8 6 2.8341 -1.8463 4.9079 9 8 3.5087 -2.7998 5.2498 10 7 2.2712 -1.0507 5.8388 11 6 2.4707 -1.3341 7.2622 12 6 1.7305 -0.2888 8.0991 13 1 0.7197 -0.0968 7.7390 14 6 1.8067 -0.5455 9.6134 15 6 1.9798 0.9732 9.7824 16 1 2.7074 1.2473 10.5465 17 7 0.7131 1.6968 9.9175 18 6 0.6795 2.9036 10.5638 19 1 1.5867 3.3217 10.9743 20 6 -0.5205 3.5894 10.6913 21 7 -1.6263 3.0796 10.1914 22 14 -0.5663 5.2360 11.5723 23 1 -0.3325 6.3279 10.5934 24 1 -1.8946 5.4193 12.2105 25 1 0.4920 5.2698 12.6137 26 6 2.5475 0.9893 8.3516 27 16 1.6916 -0.2296 2.8315 28 1 -0.3632 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 3.1331 -2.2662 0.2942 36 1 3.7771 -3.1610 2.5912 37 1 1.7333 -0.2909 5.5663 38 1 3.5352 -1.2982 7.4941 39 1 2.0818 -2.3258 7.4934 40 1 0.8792 -0.9292 10.0383 41 1 2.6817 -1.1209 9.9152 42 1 -0.1017 1.3211 9.5491 43 1 -2.4649 3.5587 10.2808 44 1 3.6256 0.8342 8.3078 45 1 2.2174 1.8428 7.7595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086561120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:48 Heat of formation + Delta-G solvation = 8.453477 kcal Electronic energy + Delta-G solvation = -23848.576122 eV Core-core repulsion = 20378.893881 eV Total energy + Delta-G solvation = -3469.682241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88408 -38.72170 -38.16653 -35.42329 -34.66841 -33.22053 -30.40396 -29.49252 -27.58332 -27.35267 -25.10727 -24.97104 -23.67146 -22.00500 -21.62858 -21.19557 -19.61343 -18.51000 -17.88023 -17.27552 -16.47013 -15.76327 -15.48145 -15.20108 -14.85765 -14.78301 -14.27634 -14.20388 -14.02822 -13.75137 -13.38343 -13.33735 -12.90341 -12.83974 -12.51373 -12.42771 -12.24027 -11.93349 -11.74105 -11.58258 -11.55326 -11.40803 -11.06399 -10.93510 -10.85581 -10.50717 -10.27557 -10.17506 -9.86719 -9.70723 -9.50179 -9.14559 -8.90815 -8.83811 -8.79541 -7.01835 -5.82366 -3.11435 0.29295 1.21745 1.66337 2.17417 3.11863 3.13778 3.40623 3.46147 3.47651 4.16615 4.46636 4.54277 4.68657 4.70419 4.94631 5.04039 5.06793 5.10783 5.20356 5.21696 5.24365 5.37971 5.40692 5.43771 5.57114 5.60239 5.67292 5.71892 5.80092 5.81393 5.85791 5.91760 5.96654 6.08849 6.11994 6.20216 6.35108 6.36512 6.57147 6.73006 6.88026 7.02695 7.41875 7.67530 8.09935 8.36811 9.47512 10.04936 10.39218 11.40058 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.002623 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.164847 B =10670.862836 C =12327.344005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.150 4.150 4 C -0.188 4.188 5 C -0.155 4.155 6 C -0.054 4.054 7 C -0.270 4.270 8 C 0.588 3.412 9 O -0.536 6.536 10 N -0.719 5.719 11 C 0.132 3.868 12 C -0.121 4.121 13 H 0.093 0.907 14 C -0.147 4.147 15 C 0.168 3.832 16 H 0.063 0.937 17 N -0.706 5.706 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.169 4.169 27 S 0.213 5.787 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.399 0.601 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -8.480 -21.463 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.048 4.048 3 C -0.208 4.208 4 C -0.308 4.308 5 C -0.186 4.186 6 C -0.088 4.088 7 C -0.390 4.390 8 C 0.374 3.626 9 O -0.415 6.415 10 N -0.370 5.370 11 C 0.009 3.991 12 C -0.140 4.140 13 H 0.111 0.889 14 C -0.187 4.187 15 C 0.055 3.945 16 H 0.081 0.919 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.210 4.210 27 S 0.481 5.519 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.234 0.766 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.752 -7.787 -20.396 22.852 hybrid contribution 0.217 -0.098 -0.645 0.688 sum 6.968 -7.886 -21.041 23.526 Atomic orbital electron populations 1.21957 0.93652 1.02569 1.02616 1.19787 0.96118 0.95752 0.93171 1.21956 1.01678 0.94545 1.02616 1.24338 1.04635 1.01495 1.00316 1.19957 1.02084 0.97676 0.98877 1.20720 0.98169 0.99642 0.90237 1.24671 1.11841 1.04878 0.97608 1.16969 0.79543 0.82529 0.83596 1.90815 1.39935 1.29250 1.81541 1.45955 1.52937 1.30994 1.07095 1.21535 1.00605 0.99034 0.77934 1.22732 0.99878 0.95787 0.95603 0.88865 1.23436 1.01808 0.99607 0.93805 1.21089 0.89831 0.89835 0.93708 0.91902 1.42176 1.04096 1.21418 1.66742 1.19288 0.94091 0.95651 1.28276 0.90994 1.24762 0.95530 0.99129 1.01459 1.69660 0.98543 1.39313 1.50545 0.86173 0.76833 0.83860 0.79216 1.21676 1.21754 1.20695 1.23926 0.98029 0.96563 1.02510 1.83110 1.46961 1.26042 0.95794 0.92127 0.91648 0.92055 0.89307 0.92057 0.91646 0.92129 0.83987 0.83083 0.76618 0.91271 0.91530 0.91252 0.90394 0.78110 0.93437 0.91350 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.08 37.16 0.34 -0.60 16 2 C -0.03 -0.19 3.25 -91.77 -0.30 -0.48 16 3 C -0.15 -0.94 9.08 37.16 0.34 -0.61 16 4 C -0.19 -1.62 4.94 -35.86 -0.18 -1.80 16 5 C -0.16 -1.37 9.95 -41.41 -0.41 -1.78 16 6 C -0.05 -0.59 10.01 -40.43 -0.40 -0.99 16 7 C -0.27 -3.26 6.45 -36.79 -0.24 -3.50 16 8 C 0.59 8.50 7.78 -12.90 -0.10 8.40 16 9 O -0.54 -9.39 16.84 5.19 0.09 -9.30 16 10 N -0.72 -9.57 5.55 -61.65 -0.34 -9.92 16 11 C 0.13 1.82 5.50 -4.04 -0.02 1.79 16 12 C -0.12 -1.82 3.62 -89.80 -0.33 -2.14 16 13 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 14 C -0.15 -2.33 7.39 -25.92 -0.19 -2.53 16 15 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 16 H 0.06 1.22 8.10 -51.92 -0.42 0.80 16 17 N -0.71 -17.21 5.31 -52.55 -0.28 -17.49 16 18 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.17 -2.80 7.44 -25.83 -0.19 -2.99 16 27 S 0.21 2.07 21.37 -107.50 -2.30 -0.23 16 28 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.40 4.81 7.59 -40.82 -0.31 4.50 16 38 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 42 H 0.38 9.92 7.90 -40.82 -0.32 9.59 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 386.28 15.07 5.82 5.82 Total: -1.00 -31.37 386.28 -10.85 -42.22 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.31 Total: 10.25 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.24 Total: -11.50 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.10 Total: -54.27 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.30 Total: -0.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.37 -10.85 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086561120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.676 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds