Wall clock time and date at job start Tue Mar 31 2020 13:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47359 * 2 1 4 4 C 1.50702 * 109.46875 * 120.00689 * 2 1 3 5 5 C 1.33812 * 124.52098 * 120.00010 * 4 2 1 6 6 C 1.37474 * 115.09796 * 179.76414 * 5 4 2 7 7 C 1.36650 * 113.29743 * 0.45898 * 6 5 4 8 8 C 1.46580 * 125.45913 * 179.83891 * 7 6 5 9 9 O 1.21703 * 120.00006 * 359.71501 * 8 7 6 10 10 N 1.34776 * 120.00118 * 179.71039 * 8 7 6 11 11 C 1.46497 * 120.00004 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47173 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84791 * 45.33545 * 12 11 10 14 14 C 1.53781 * 113.61570 * 176.53083 * 12 11 10 15 15 C 1.53780 * 87.07624 * 139.98161 * 14 12 11 16 16 H 1.09010 * 113.61089 * 219.92895 * 15 14 12 17 17 N 1.46502 * 113.61568 * 89.12132 * 15 14 12 18 18 C 1.36932 * 120.00391 * 154.99391 * 17 15 14 19 19 H 1.08001 * 119.99778 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00137 * 179.97438 * 18 17 15 21 21 N 1.31623 * 120.00092 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47287 * 89.99722 * 22 20 18 24 24 H 1.48502 * 109.47385 * 210.00217 * 22 20 18 25 25 H 1.48507 * 109.47078 * 329.99801 * 22 20 18 26 26 C 1.53780 * 113.61448 * 274.14228 * 12 11 10 27 27 S 1.70610 * 124.52095 * 300.01661 * 4 2 1 28 28 H 1.08992 * 109.46654 * 300.00077 * 1 2 3 29 29 H 1.09001 * 109.46776 * 59.99476 * 1 2 3 30 30 H 1.08997 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46909 * 240.00262 * 2 1 3 32 32 H 1.08999 * 109.47253 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47286 * 300.00224 * 3 2 1 34 34 H 1.09004 * 109.46896 * 60.00254 * 3 2 1 35 35 H 1.08000 * 122.45697 * 0.03865 * 5 4 2 36 36 H 1.08005 * 123.35224 * 180.27149 * 6 5 4 37 37 H 0.97002 * 119.99738 * 0.02562 * 10 8 7 38 38 H 1.09006 * 109.47301 * 60.00545 * 11 10 8 39 39 H 1.08996 * 109.47804 * 300.00196 * 11 10 8 40 40 H 1.08994 * 113.60887 * 254.53194 * 14 12 11 41 41 H 1.08997 * 113.61223 * 25.43567 * 14 12 11 42 42 H 0.97003 * 119.99493 * 334.99399 * 17 15 14 43 43 H 0.96996 * 120.00091 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.61461 * 334.56153 * 26 12 11 45 45 H 1.08995 * 113.61894 * 105.46890 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 2.8048 -1.8031 1.2129 6 6 3.1549 -2.2895 2.4502 7 6 2.6340 -1.5631 3.4837 8 6 2.8341 -1.8463 4.9079 9 8 3.5087 -2.7998 5.2498 10 7 2.2712 -1.0507 5.8388 11 6 2.4707 -1.3341 7.2622 12 6 1.7305 -0.2888 8.0991 13 1 0.7197 -0.0968 7.7390 14 6 1.8067 -0.5455 9.6134 15 6 1.9798 0.9732 9.7824 16 1 2.7074 1.2473 10.5465 17 7 0.7131 1.6968 9.9175 18 6 0.6795 2.9036 10.5638 19 1 1.5867 3.3217 10.9743 20 6 -0.5205 3.5894 10.6913 21 7 -1.6263 3.0796 10.1914 22 14 -0.5663 5.2360 11.5723 23 1 -0.3325 6.3279 10.5934 24 1 -1.8946 5.4193 12.2105 25 1 0.4920 5.2698 12.6137 26 6 2.5475 0.9893 8.3516 27 16 1.6916 -0.2296 2.8315 28 1 -0.3632 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 3.1331 -2.2662 0.2942 36 1 3.7771 -3.1610 2.5912 37 1 1.7333 -0.2909 5.5663 38 1 3.5352 -1.2982 7.4941 39 1 2.0818 -2.3258 7.4934 40 1 0.8792 -0.9292 10.0383 41 1 2.6817 -1.1209 9.9152 42 1 -0.1017 1.3211 9.5491 43 1 -2.4649 3.5587 10.2808 44 1 3.6256 0.8342 8.3078 45 1 2.2174 1.8428 7.7595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086561120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:47 Heat of formation + Delta-G solvation = -9.795921 kcal Electronic energy + Delta-G solvation = -23849.367476 eV Core-core repulsion = 20378.893881 eV Total energy + Delta-G solvation = -3470.473595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01708 -39.96166 -39.04777 -36.13820 -35.96138 -34.99254 -32.15674 -30.53953 -28.55618 -28.06044 -26.45123 -26.07911 -25.39361 -23.28226 -22.45926 -22.03833 -20.59289 -19.79693 -19.31663 -18.80639 -17.44119 -16.76688 -16.69333 -16.53843 -16.15226 -15.80391 -15.43755 -15.34698 -14.94193 -14.85427 -14.66479 -14.51562 -14.18255 -13.79451 -13.47677 -13.30675 -13.22451 -12.98340 -12.93885 -12.90077 -12.63778 -12.37256 -12.16555 -12.12964 -12.09370 -12.07819 -11.61984 -11.55517 -11.49539 -11.22138 -10.94285 -10.79846 -10.25974 -9.66463 -9.56496 -8.99817 -7.94884 -5.23225 -0.53551 0.42995 0.90318 1.36205 1.48545 1.49500 1.58013 2.06514 2.12495 2.56149 3.37579 3.56538 3.66339 3.73846 3.76603 3.91539 3.96409 4.13536 4.18639 4.30134 4.31547 4.38071 4.43287 4.61297 4.70065 4.72162 4.74039 4.82226 4.92255 4.93848 4.97641 5.04449 5.08366 5.09613 5.19547 5.21014 5.32643 5.32671 5.33303 5.40752 5.44426 5.52934 5.64928 6.28714 6.34804 7.01178 7.33802 8.10621 8.33145 9.28374 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.002623 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.164847 B =10670.862836 C =12327.344005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 C -0.151 4.151 4 C -0.177 4.177 5 C -0.160 4.160 6 C -0.050 4.050 7 C -0.304 4.304 8 C 0.587 3.413 9 O -0.574 6.574 10 N -0.716 5.716 11 C 0.140 3.860 12 C -0.105 4.105 13 H 0.081 0.919 14 C -0.132 4.132 15 C 0.145 3.855 16 H 0.061 0.939 17 N -0.720 5.720 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.287 1.287 24 H -0.297 1.297 25 H -0.270 1.270 26 C -0.155 4.155 27 S 0.218 5.782 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.169 0.831 36 H 0.152 0.848 37 H 0.405 0.595 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.092 0.908 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.114 -8.394 -23.037 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.048 4.048 3 C -0.209 4.209 4 C -0.297 4.297 5 C -0.190 4.190 6 C -0.085 4.085 7 C -0.424 4.424 8 C 0.375 3.625 9 O -0.456 6.456 10 N -0.366 5.366 11 C 0.017 3.983 12 C -0.124 4.124 13 H 0.099 0.901 14 C -0.172 4.172 15 C 0.035 3.965 16 H 0.080 0.920 17 N -0.358 5.358 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.195 1.195 26 C -0.195 4.195 27 S 0.487 5.513 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.186 0.814 36 H 0.169 0.831 37 H 0.241 0.759 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.790 -7.699 -21.968 24.547 hybrid contribution -0.039 -0.148 -0.236 0.281 sum 7.751 -7.847 -22.205 24.793 Atomic orbital electron populations 1.21973 0.93351 1.02590 1.02948 1.19919 0.96305 0.95880 0.92706 1.21970 1.01607 0.94329 1.02946 1.24719 1.03497 1.01112 1.00374 1.20169 1.02006 0.97730 0.99059 1.20942 0.97426 0.99298 0.90808 1.24539 1.14298 1.06940 0.96640 1.17266 0.78765 0.81872 0.84607 1.90781 1.41725 1.30788 1.82351 1.45915 1.52769 1.31053 1.06881 1.21400 1.00476 0.98420 0.78029 1.22522 0.99117 0.95320 0.95450 0.90110 1.23337 1.02643 0.97097 0.94087 1.21409 0.88098 0.91781 0.95210 0.92040 1.42309 1.05488 1.21211 1.66787 1.19663 0.94096 0.96436 1.27179 0.90573 1.25541 0.95404 1.02643 1.03117 1.69809 0.98864 1.40728 1.52518 0.85162 0.76601 0.79896 0.78239 1.21411 1.22320 1.19490 1.23759 0.99439 0.96578 0.99753 1.83082 1.46446 1.25100 0.96718 0.93073 0.90118 0.92197 0.87409 0.92189 0.90117 0.93076 0.81372 0.83086 0.75941 0.90892 0.91412 0.92220 0.87472 0.79352 0.94017 0.88992 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.08 71.98 0.65 -0.92 16 2 C -0.03 -0.30 3.25 -11.54 -0.04 -0.34 16 3 C -0.15 -1.57 9.08 71.98 0.65 -0.92 16 4 C -0.18 -2.73 4.94 24.68 0.12 -2.60 16 5 C -0.16 -2.50 9.95 21.08 0.21 -2.29 16 6 C -0.05 -1.04 10.01 21.72 0.22 -0.83 16 7 C -0.30 -7.25 6.45 24.08 0.16 -7.09 16 8 C 0.59 16.96 7.78 86.42 0.67 17.63 16 9 O -0.57 -20.20 16.84 -4.36 -0.07 -20.28 16 10 N -0.72 -18.78 5.55 -467.17 -2.59 -21.37 16 11 C 0.14 3.70 5.50 86.38 0.47 4.17 16 12 C -0.11 -3.07 3.62 -10.27 -0.04 -3.11 16 13 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 14 C -0.13 -4.04 7.39 31.12 0.23 -3.81 16 15 C 0.15 5.51 4.57 45.57 0.21 5.72 16 16 H 0.06 2.34 8.10 -2.38 -0.02 2.32 16 17 N -0.72 -35.47 5.31 -320.17 -1.70 -37.16 16 18 C -0.24 -13.23 9.97 84.03 0.84 -12.39 16 19 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 21 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 22 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 C -0.15 -4.96 7.44 31.18 0.23 -4.73 16 27 S 0.22 4.08 21.37 -56.49 -1.21 2.87 16 28 H 0.05 0.63 7.90 -2.39 -0.02 0.61 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.81 8.07 -2.38 -0.02 0.79 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 0.63 7.90 -2.38 -0.02 0.61 16 35 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.41 9.66 7.59 -92.71 -0.70 8.96 16 38 H 0.07 1.92 7.88 -2.38 -0.02 1.90 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.11 2.67 8.10 -2.39 -0.02 2.65 16 42 H 0.37 19.75 7.90 -92.71 -0.73 19.01 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.09 2.54 7.92 -2.39 -0.02 2.52 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.78 386.28 1.35 -66.42 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.44 Total: 35.33 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 5.06 Total: -15.28 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -4.01 Total: -116.66 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.07 Total: -20.28 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.21 Total: 2.87 kcal Total: -67.78 1.35 -66.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086561120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.627 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds