Wall clock time and date at job start Tue Mar 31 2020 13:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46883 * 2 1 4 4 C 1.37475 * 123.35475 * 265.22083 * 3 2 1 5 5 C 1.33817 * 115.10083 * 180.29725 * 4 3 2 6 6 S 1.70616 * 110.95324 * 359.72619 * 5 4 3 7 7 C 1.36652 * 123.34710 * 85.00386 * 3 2 1 8 8 C 1.46574 * 125.45889 * 359.97438 * 7 3 2 9 9 O 1.21700 * 120.00360 * 359.72310 * 8 7 3 10 10 N 1.34782 * 120.00113 * 179.71854 * 8 7 3 11 11 C 1.46498 * 119.99965 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46687 * 180.02562 * 11 10 8 13 13 H 1.08996 * 110.43320 * 307.53871 * 12 11 10 14 14 C 1.54890 * 110.48342 * 70.22607 * 12 11 10 15 15 C 1.54895 * 102.74327 * 156.61881 * 14 12 11 16 16 C 1.54261 * 104.19834 * 322.05332 * 15 14 12 17 17 H 1.08998 * 110.06938 * 142.91938 * 16 15 14 18 18 N 1.46502 * 110.03415 * 264.32842 * 16 15 14 19 19 C 1.36938 * 119.99723 * 272.16888 * 18 16 15 20 20 H 1.07997 * 120.00392 * 359.97438 * 19 18 16 21 21 C 1.38816 * 119.99926 * 180.02562 * 19 18 16 22 22 N 1.31611 * 120.00308 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99650 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47183 * 90.00695 * 23 21 19 25 25 H 1.48500 * 109.46900 * 210.00281 * 23 21 19 26 26 H 1.48497 * 109.47328 * 330.00046 * 23 21 19 27 27 C 1.53875 * 106.59738 * 23.61340 * 16 15 14 28 28 H 1.09005 * 109.47328 * 59.99586 * 1 2 3 29 29 H 1.08998 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47092 * 299.99745 * 1 2 3 31 31 H 1.09006 * 109.47137 * 240.00766 * 2 1 3 32 32 H 1.08992 * 109.47156 * 120.00185 * 2 1 3 33 33 H 1.07997 * 122.44631 * 0.04056 * 4 3 2 34 34 H 1.07999 * 124.51991 * 179.70108 * 5 4 3 35 35 H 0.97004 * 119.99482 * 0.02562 * 10 8 7 36 36 H 1.08992 * 109.47311 * 60.00333 * 11 10 8 37 37 H 1.08997 * 109.46828 * 299.99977 * 11 10 8 38 38 H 1.08997 * 110.75347 * 274.92639 * 14 12 11 39 39 H 1.08992 * 110.75945 * 38.30706 * 14 12 11 40 40 H 1.08999 * 110.48086 * 203.37438 * 15 14 12 41 41 H 1.09002 * 110.59867 * 80.79190 * 15 14 12 42 42 H 0.96999 * 119.99818 * 92.16837 * 18 16 15 43 43 H 0.96996 * 120.00435 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.03284 * 240.71541 * 27 16 15 45 45 H 1.09004 * 110.03418 * 119.28572 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3744 2.1016 -1.1443 5 6 2.8066 3.3534 -0.9524 6 16 2.7997 3.7537 0.7062 7 6 2.1889 2.1622 1.1372 8 6 1.8996 1.7025 2.4986 9 8 1.4782 0.5759 2.6838 10 7 2.1003 2.5274 3.5454 11 6 1.8116 2.0676 4.9061 12 6 2.1227 3.1887 5.8999 13 1 3.1345 3.5636 5.7460 14 6 1.0900 4.3351 5.7643 15 6 1.1599 5.0234 7.1502 16 6 1.3340 3.8565 8.1439 17 1 2.0042 4.1501 8.9519 18 7 0.0325 3.4635 8.6897 19 6 -0.4582 4.0866 9.8060 20 1 0.1144 4.8674 10.2844 21 6 -1.6912 3.7139 10.3235 22 7 -2.1626 4.3124 11.3967 23 14 -2.6813 2.3630 9.4965 24 1 -2.3159 1.0499 10.0859 25 1 -4.1302 2.6130 9.7048 26 1 -2.3852 2.3521 8.0414 27 6 1.9462 2.6899 7.3490 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.3036 1.6571 -2.1260 34 1 3.1185 4.0211 -1.7419 35 1 2.4359 3.4255 3.3978 36 1 2.4279 1.1981 5.1342 37 1 0.7586 1.7968 4.9823 38 1 1.3824 5.0269 4.9744 39 1 0.0923 3.9367 5.5808 40 1 0.2356 5.5639 7.3546 41 1 2.0144 5.6983 7.2006 42 1 -0.4817 2.7620 8.2602 43 1 -3.0240 4.0518 11.7585 44 1 1.2749 1.8313 7.3692 45 1 2.9139 2.4177 7.7706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086882541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:05 Heat of formation + Delta-G solvation = -10.519959 kcal Electronic energy + Delta-G solvation = -24508.957792 eV Core-core repulsion = 21038.452801 eV Total energy + Delta-G solvation = -3470.504991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17427 -38.67933 -37.88862 -35.05080 -33.38906 -32.96356 -31.14568 -30.07901 -28.84422 -27.60768 -25.74818 -24.17983 -22.81835 -22.66181 -21.52143 -20.25785 -19.38530 -18.92293 -18.40030 -17.51587 -16.39084 -16.10595 -15.59091 -15.46712 -14.96009 -14.64547 -14.34883 -14.15868 -14.04448 -13.68673 -13.48638 -13.14094 -13.07331 -12.75071 -12.63241 -12.35275 -12.17864 -11.87783 -11.75084 -11.37170 -11.32355 -10.99562 -10.88801 -10.79447 -10.63658 -10.47417 -10.38379 -10.34578 -10.04690 -9.91061 -9.56966 -9.33836 -9.03091 -8.89339 -8.81422 -7.23760 -5.75810 -3.10726 0.18393 1.13192 1.52062 2.05255 2.97447 3.00728 3.39500 3.42955 3.47449 4.46508 4.54048 4.60753 4.73723 4.82509 4.84930 4.90301 4.97668 5.10013 5.24493 5.40414 5.41150 5.47825 5.50658 5.57474 5.64865 5.68758 5.71870 5.81817 5.86853 5.95590 5.97225 6.01050 6.07422 6.13465 6.21532 6.22423 6.29973 6.31559 6.52218 6.65044 6.80180 7.00025 7.28397 7.99997 8.02290 8.44010 9.23102 9.95951 10.15852 11.42661 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.002688 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.379117 B =10413.753657 C =11230.130908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.019 4.019 4 C -0.146 4.146 5 C -0.228 4.228 6 S 0.194 5.806 7 C -0.269 4.269 8 C 0.588 3.412 9 O -0.524 6.524 10 N -0.723 5.723 11 C 0.127 3.873 12 C -0.105 4.105 13 H 0.078 0.922 14 C -0.115 4.115 15 C -0.146 4.146 16 C 0.180 3.820 17 H 0.058 0.942 18 N -0.745 5.745 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.123 4.123 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.144 0.856 34 H 0.169 0.831 35 H 0.397 0.603 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.069 0.931 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.061 -2.793 -27.558 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.034 4.034 4 C -0.178 4.178 5 C -0.365 4.365 6 S 0.462 5.538 7 C -0.389 4.389 8 C 0.374 3.626 9 O -0.402 6.402 10 N -0.374 5.374 11 C 0.005 3.995 12 C -0.124 4.124 13 H 0.096 0.904 14 C -0.153 4.153 15 C -0.186 4.186 16 C 0.070 3.930 17 H 0.076 0.924 18 N -0.388 5.388 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.162 4.162 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.162 0.838 34 H 0.186 0.814 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.123 -2.119 -26.339 29.503 hybrid contribution -1.002 -1.532 -1.628 2.450 sum 12.121 -3.651 -27.967 30.698 Atomic orbital electron populations 1.21608 0.94167 1.01904 1.01828 1.20425 0.96624 0.90487 1.03597 1.19556 0.95887 0.97516 0.90423 1.19937 1.03881 0.94240 0.99732 1.25251 1.08088 1.01398 1.01808 1.83031 1.59974 1.11837 0.98940 1.24474 1.17151 0.99654 0.97667 1.16912 0.77926 0.85055 0.82737 1.90806 1.45420 1.18923 1.85045 1.45925 1.67647 1.16868 1.06944 1.21562 1.01699 0.97182 0.79092 1.22269 0.99844 0.95268 0.95047 0.90393 1.22533 0.98543 0.96306 0.97913 1.23087 1.01694 0.99033 0.94782 1.20769 0.87689 0.91103 0.93467 0.92416 1.42913 1.18770 1.44551 1.32560 1.19094 1.01497 1.15367 1.01283 0.89226 1.24669 0.97581 0.99395 0.97545 1.69695 1.20357 1.44515 1.23714 0.86577 0.80031 0.82843 0.79248 1.21083 1.21805 1.20295 1.22490 1.01189 0.99654 0.92876 0.93255 0.92248 0.92117 0.91335 0.88684 0.83800 0.81371 0.76935 0.91261 0.90930 0.92730 0.91486 0.90680 0.92839 0.80665 0.93098 0.91218 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.77 37.16 0.36 -0.98 16 2 C -0.07 -0.70 5.50 -27.88 -0.15 -0.85 16 3 C -0.02 -0.18 5.16 -105.47 -0.54 -0.73 16 4 C -0.15 -1.14 9.96 -41.41 -0.41 -1.55 16 5 C -0.23 -1.55 10.92 29.18 0.32 -1.23 16 6 S 0.19 1.47 22.16 -107.50 -2.38 -0.91 16 7 C -0.27 -2.86 6.45 -36.79 -0.24 -3.09 16 8 C 0.59 7.46 7.78 -12.90 -0.10 7.36 16 9 O -0.52 -8.11 13.71 5.19 0.07 -8.04 16 10 N -0.72 -8.02 5.44 -61.65 -0.34 -8.36 16 11 C 0.13 1.56 4.96 -4.04 -0.02 1.54 16 12 C -0.11 -1.27 2.89 -88.96 -0.26 -1.52 16 13 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.12 -1.55 6.19 -24.73 -0.15 -1.71 16 15 C -0.15 -2.37 6.54 -25.07 -0.16 -2.53 16 16 C 0.18 3.29 3.55 -66.81 -0.24 3.06 16 17 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 18 N -0.75 -17.28 4.88 -52.34 -0.26 -17.53 16 19 C -0.24 -6.77 10.44 -15.06 -0.16 -6.92 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 23 Si 0.88 22.31 27.73 -169.99 -4.71 17.59 16 24 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 27 C -0.12 -1.80 6.14 -25.61 -0.16 -1.96 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.73 7.58 -51.93 -0.39 0.33 16 31 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.09 1.11 6.33 -51.93 -0.33 0.78 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.40 3.59 7.55 -40.82 -0.31 3.28 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 40 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.36 8.31 5.38 -40.82 -0.22 8.09 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.07 1.09 7.31 -51.93 -0.38 0.71 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -32.65 374.24 -10.32 -42.98 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.12 Total: 8.39 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.01 Total: -11.11 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.18 Total: -54.53 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.07 Total: -8.04 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.38 Total: -0.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.65 -10.32 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086882541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.457 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds