Wall clock time and date at job start Tue Mar 31 2020 13:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46883 * 2 1 4 4 C 1.37475 * 123.35475 * 265.22083 * 3 2 1 5 5 C 1.33817 * 115.10083 * 180.29725 * 4 3 2 6 6 S 1.70616 * 110.95324 * 359.72619 * 5 4 3 7 7 C 1.36652 * 123.34710 * 85.00386 * 3 2 1 8 8 C 1.46574 * 125.45889 * 359.97438 * 7 3 2 9 9 O 1.21700 * 120.00360 * 359.72310 * 8 7 3 10 10 N 1.34782 * 120.00113 * 179.71854 * 8 7 3 11 11 C 1.46498 * 119.99965 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46687 * 180.02562 * 11 10 8 13 13 H 1.08996 * 110.43320 * 307.53871 * 12 11 10 14 14 C 1.54890 * 110.48342 * 70.22607 * 12 11 10 15 15 C 1.54895 * 102.74327 * 156.61881 * 14 12 11 16 16 C 1.54261 * 104.19834 * 322.05332 * 15 14 12 17 17 H 1.08998 * 110.06938 * 142.91938 * 16 15 14 18 18 N 1.46502 * 110.03415 * 264.32842 * 16 15 14 19 19 C 1.36938 * 119.99723 * 272.16888 * 18 16 15 20 20 H 1.07997 * 120.00392 * 359.97438 * 19 18 16 21 21 C 1.38816 * 119.99926 * 180.02562 * 19 18 16 22 22 N 1.31611 * 120.00308 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99650 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47183 * 90.00695 * 23 21 19 25 25 H 1.48500 * 109.46900 * 210.00281 * 23 21 19 26 26 H 1.48497 * 109.47328 * 330.00046 * 23 21 19 27 27 C 1.53875 * 106.59738 * 23.61340 * 16 15 14 28 28 H 1.09005 * 109.47328 * 59.99586 * 1 2 3 29 29 H 1.08998 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47092 * 299.99745 * 1 2 3 31 31 H 1.09006 * 109.47137 * 240.00766 * 2 1 3 32 32 H 1.08992 * 109.47156 * 120.00185 * 2 1 3 33 33 H 1.07997 * 122.44631 * 0.04056 * 4 3 2 34 34 H 1.07999 * 124.51991 * 179.70108 * 5 4 3 35 35 H 0.97004 * 119.99482 * 0.02562 * 10 8 7 36 36 H 1.08992 * 109.47311 * 60.00333 * 11 10 8 37 37 H 1.08997 * 109.46828 * 299.99977 * 11 10 8 38 38 H 1.08997 * 110.75347 * 274.92639 * 14 12 11 39 39 H 1.08992 * 110.75945 * 38.30706 * 14 12 11 40 40 H 1.08999 * 110.48086 * 203.37438 * 15 14 12 41 41 H 1.09002 * 110.59867 * 80.79190 * 15 14 12 42 42 H 0.96999 * 119.99818 * 92.16837 * 18 16 15 43 43 H 0.96996 * 120.00435 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.03284 * 240.71541 * 27 16 15 45 45 H 1.09004 * 110.03418 * 119.28572 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3744 2.1016 -1.1443 5 6 2.8066 3.3534 -0.9524 6 16 2.7997 3.7537 0.7062 7 6 2.1889 2.1622 1.1372 8 6 1.8996 1.7025 2.4986 9 8 1.4782 0.5759 2.6838 10 7 2.1003 2.5274 3.5454 11 6 1.8116 2.0676 4.9061 12 6 2.1227 3.1887 5.8999 13 1 3.1345 3.5636 5.7460 14 6 1.0900 4.3351 5.7643 15 6 1.1599 5.0234 7.1502 16 6 1.3340 3.8565 8.1439 17 1 2.0042 4.1501 8.9519 18 7 0.0325 3.4635 8.6897 19 6 -0.4582 4.0866 9.8060 20 1 0.1144 4.8674 10.2844 21 6 -1.6912 3.7139 10.3235 22 7 -2.1626 4.3124 11.3967 23 14 -2.6813 2.3630 9.4965 24 1 -2.3159 1.0499 10.0859 25 1 -4.1302 2.6130 9.7048 26 1 -2.3852 2.3521 8.0414 27 6 1.9462 2.6899 7.3490 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.3036 1.6571 -2.1260 34 1 3.1185 4.0211 -1.7419 35 1 2.4359 3.4255 3.3978 36 1 2.4279 1.1981 5.1342 37 1 0.7586 1.7968 4.9823 38 1 1.3824 5.0269 4.9744 39 1 0.0923 3.9367 5.5808 40 1 0.2356 5.5639 7.3546 41 1 2.0144 5.6983 7.2006 42 1 -0.4817 2.7620 8.2602 43 1 -3.0240 4.0518 11.7585 44 1 1.2749 1.8313 7.3692 45 1 2.9139 2.4177 7.7706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086882541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:04 Heat of formation + Delta-G solvation = -31.136409 kcal Electronic energy + Delta-G solvation = -24509.851788 eV Core-core repulsion = 21038.452801 eV Total energy + Delta-G solvation = -3471.398988 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06606 -39.73927 -38.80689 -36.36819 -35.01208 -33.67309 -32.99476 -31.14383 -29.85421 -28.98394 -26.61425 -25.36154 -24.62832 -23.32788 -22.38728 -21.34432 -20.87130 -19.87612 -19.47726 -19.06133 -17.35259 -16.93503 -16.69109 -16.55207 -16.18449 -16.06418 -15.62511 -15.07191 -14.87714 -14.81121 -14.60658 -14.38213 -14.34489 -13.98584 -13.87568 -13.30387 -13.27497 -13.10329 -12.85653 -12.56181 -12.43431 -12.24527 -12.17633 -12.00041 -11.90389 -11.77992 -11.73162 -11.65662 -11.55617 -11.43590 -10.96875 -10.92559 -10.24543 -9.73100 -9.39099 -9.26907 -8.02389 -5.33675 -0.47761 0.52135 0.94112 1.36510 1.38140 1.40984 1.45284 2.09493 2.15207 2.47281 3.28325 3.57170 3.66047 3.73597 3.85537 3.89553 4.02502 4.16309 4.31527 4.40121 4.46219 4.49020 4.51730 4.57628 4.64897 4.74564 4.75209 4.79773 4.86553 4.92365 5.03767 5.07477 5.09088 5.10714 5.20740 5.26039 5.32429 5.41913 5.43366 5.50930 5.52939 5.59461 5.81378 6.23419 6.43342 7.09697 7.11786 7.88911 8.05526 9.19544 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.002688 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.379117 B =10413.753657 C =11230.130908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.025 4.025 4 C -0.159 4.159 5 C -0.215 4.215 6 S 0.228 5.772 7 C -0.308 4.308 8 C 0.583 3.417 9 O -0.563 6.563 10 N -0.714 5.714 11 C 0.134 3.866 12 C -0.087 4.087 13 H 0.109 0.891 14 C -0.109 4.109 15 C -0.140 4.140 16 C 0.165 3.835 17 H 0.046 0.954 18 N -0.750 5.750 19 C -0.223 4.223 20 H 0.058 0.942 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.950 3.050 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.257 1.257 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.166 0.834 34 H 0.200 0.800 35 H 0.408 0.592 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.362 0.638 43 H 0.256 0.744 44 H 0.059 0.941 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.879 -2.631 -31.223 34.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 C -0.041 4.041 4 C -0.189 4.189 5 C -0.353 4.353 6 S 0.497 5.503 7 C -0.428 4.428 8 C 0.370 3.630 9 O -0.444 6.444 10 N -0.365 5.365 11 C 0.011 3.989 12 C -0.106 4.106 13 H 0.127 0.873 14 C -0.146 4.146 15 C -0.180 4.180 16 C 0.057 3.943 17 H 0.064 0.936 18 N -0.393 5.393 19 C -0.354 4.354 20 H 0.076 0.924 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.778 3.222 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.182 1.182 27 C -0.156 4.156 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.183 0.817 34 H 0.217 0.783 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.195 0.805 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.004 -1.931 -30.052 33.644 hybrid contribution -1.448 -1.473 -0.519 2.129 sum 13.556 -3.403 -30.571 33.614 Atomic orbital electron populations 1.21557 0.94424 1.02031 1.01025 1.20393 0.96401 0.90985 1.03378 1.19781 0.95592 0.97501 0.91198 1.20105 1.04308 0.94627 0.99902 1.25701 1.06040 1.01361 1.02169 1.82848 1.58810 1.09305 0.99353 1.24415 1.19619 1.02004 0.96717 1.17281 0.77209 0.84647 0.83815 1.90782 1.47224 1.20579 1.85795 1.45784 1.67287 1.17284 1.06194 1.21372 1.00438 0.97302 0.79823 1.22146 1.00982 0.94383 0.93083 0.87272 1.22485 0.98162 0.97015 0.96960 1.22938 1.00966 0.98331 0.95798 1.21110 0.85423 0.93643 0.94085 0.93575 1.42965 1.20513 1.44327 1.31493 1.19071 1.00774 1.13783 1.01804 0.92367 1.25438 0.99149 1.02467 0.98622 1.69868 1.20944 1.46913 1.25915 0.85480 0.77765 0.79697 0.79254 1.20556 1.22404 1.18163 1.22399 1.01561 0.97566 0.94109 0.91797 0.91725 0.94967 0.89081 0.91270 0.81670 0.78307 0.75533 0.91259 0.93091 0.89587 0.93455 0.94133 0.90391 0.80469 0.93473 0.92247 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.77 71.98 0.70 -1.84 16 2 C -0.07 -1.36 5.50 29.85 0.16 -1.20 16 3 C -0.02 -0.45 5.16 -20.42 -0.11 -0.55 16 4 C -0.16 -1.98 9.96 21.08 0.21 -1.77 16 5 C -0.22 -2.09 10.92 66.81 0.73 -1.36 16 6 S 0.23 2.76 22.16 -56.49 -1.25 1.51 16 7 C -0.31 -6.10 6.45 24.07 0.16 -5.95 16 8 C 0.58 14.49 7.78 86.42 0.67 15.16 16 9 O -0.56 -17.87 13.71 -4.35 -0.06 -17.93 16 10 N -0.71 -14.65 5.44 -467.18 -2.54 -17.19 16 11 C 0.13 3.08 4.96 86.38 0.43 3.51 16 12 C -0.09 -1.85 2.89 -9.72 -0.03 -1.88 16 13 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 14 C -0.11 -2.67 6.19 31.89 0.20 -2.47 16 15 C -0.14 -4.39 6.54 31.67 0.21 -4.18 16 16 C 0.17 5.95 3.55 45.71 0.16 6.11 16 17 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 18 N -0.75 -34.88 4.88 -319.51 -1.56 -36.44 16 19 C -0.22 -12.78 10.44 84.03 0.88 -11.90 16 20 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.99 -64.09 13.97 21.65 0.30 -63.79 16 23 Si 0.95 46.90 27.73 68.60 1.90 48.80 16 24 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 26 H -0.26 -11.65 6.52 99.48 0.65 -11.00 16 27 C -0.12 -3.21 6.14 31.32 0.19 -3.02 16 28 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.03 0.79 7.58 -2.39 -0.02 0.77 16 31 H 0.09 1.24 8.12 -2.38 -0.02 1.22 16 32 H 0.07 1.67 6.33 -2.39 -0.02 1.66 16 33 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.20 0.66 8.06 -2.91 -0.02 0.64 16 35 H 0.41 6.23 7.55 -92.71 -0.70 5.53 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.41 8.02 -2.39 -0.02 1.39 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.37 7.96 -2.39 -0.02 1.35 16 40 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.36 16.51 5.38 -92.71 -0.50 16.01 16 43 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.06 1.77 7.31 -2.38 -0.02 1.75 16 45 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -74.66 374.24 1.56 -73.10 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -0.26 Total: 26.74 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 5.03 Total: -14.80 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -3.80 Total: -117.42 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.06 Total: -17.93 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.90 Total: 48.80 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.25 Total: 1.51 kcal Total: -74.66 1.56 -73.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086882541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.961 kcal (2) G-P(sol) polarization free energy of solvation -74.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds