Wall clock time and date at job start Tue Mar 31 2020 13:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50706 * 109.47482 * 2 1 4 4 C 1.37474 * 123.35465 * 265.22764 * 3 2 1 5 5 C 1.33808 * 115.10287 * 180.28545 * 4 3 2 6 6 S 1.70623 * 110.95373 * 359.72892 * 5 4 3 7 7 C 1.36644 * 123.34981 * 84.99600 * 3 2 1 8 8 C 1.46584 * 125.45703 * 0.02562 * 7 3 2 9 9 O 1.21704 * 120.00309 * 359.70819 * 8 7 3 10 10 N 1.34780 * 120.00131 * 179.97438 * 8 7 3 11 11 C 1.46493 * 120.00336 * 179.72037 * 10 8 7 12 12 H 1.09002 * 110.64069 * 328.14242 * 11 10 8 13 13 C 1.55155 * 110.71946 * 91.47585 * 11 10 8 14 14 C 1.54913 * 101.58245 * 153.86589 * 13 11 10 15 15 N 1.47429 * 104.83212 * 322.99317 * 14 13 11 16 16 C 1.36935 * 125.64512 * 204.16278 * 15 14 13 17 17 H 1.08006 * 119.99603 * 165.32983 * 16 15 14 18 18 C 1.38806 * 120.00576 * 345.32824 * 16 15 14 19 19 N 1.31623 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00243 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46975 * 60.00311 * 20 18 16 22 22 H 1.48498 * 109.47119 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47571 * 300.00300 * 20 18 16 24 24 C 1.47018 * 108.70130 * 24.12808 * 15 14 13 25 25 H 1.09010 * 109.88386 * 239.52412 * 24 15 14 26 26 C 1.52999 * 109.88377 * 118.35825 * 24 15 14 27 27 C 1.52996 * 109.47240 * 176.98246 * 26 24 15 28 28 H 1.09005 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47032 * 299.99945 * 1 2 3 30 30 H 1.09004 * 109.47215 * 59.99761 * 1 2 3 31 31 H 1.09003 * 109.47382 * 240.00470 * 2 1 3 32 32 H 1.08995 * 109.47793 * 120.00312 * 2 1 3 33 33 H 1.08008 * 122.44588 * 0.03612 * 4 3 2 34 34 H 1.08001 * 124.52477 * 179.72210 * 5 4 3 35 35 H 0.97008 * 119.99377 * 359.72656 * 10 8 7 36 36 H 1.08997 * 111.01185 * 271.94250 * 13 11 10 37 37 H 1.09006 * 111.00276 * 35.79468 * 13 11 10 38 38 H 1.09005 * 110.36589 * 204.15452 * 14 13 11 39 39 H 1.08997 * 110.36816 * 81.82990 * 14 13 11 40 40 H 0.96997 * 120.00166 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.46972 * 296.98218 * 26 24 15 42 42 H 1.09003 * 109.47079 * 56.98149 * 26 24 15 43 43 H 1.08999 * 109.47139 * 65.65376 * 27 26 24 44 44 H 1.09003 * 109.47223 * 185.65958 * 27 26 24 45 45 H 1.08998 * 109.47273 * 305.65511 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3744 2.1016 -1.1443 5 6 2.8065 3.3534 -0.9524 6 16 2.7997 3.7537 0.7061 7 6 2.1889 2.1623 1.1371 8 6 1.9004 1.7022 2.4986 9 8 1.4795 0.5754 2.6839 10 7 2.0960 2.5289 3.5450 11 6 1.8018 2.0713 4.9051 12 1 0.9741 1.3620 4.9013 13 6 3.0625 1.4461 5.5586 14 6 2.7773 1.6730 7.0643 15 7 2.1180 2.9900 7.1292 16 6 2.0940 3.8175 8.2200 17 1 1.7976 4.8500 8.1080 18 6 2.4507 3.3295 9.4695 19 7 2.8125 2.0713 9.6059 20 14 2.4187 4.4587 10.9572 21 1 1.0417 4.9782 11.1548 22 1 2.8389 3.7007 12.1630 23 1 3.3494 5.5946 10.7367 24 6 1.4911 3.2679 5.8287 25 1 1.9074 4.1816 5.4043 26 6 -0.0222 3.4132 6.0009 27 6 -0.6559 3.7763 4.6566 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3035 1.6571 -2.1261 34 1 3.1181 4.0211 -1.7420 35 1 2.4316 3.4270 3.3973 36 1 3.1343 0.3826 5.3306 37 1 3.9652 1.9724 5.2483 38 1 3.7096 1.6872 7.6290 39 1 2.1135 0.8972 7.4458 40 1 3.0614 1.7302 10.4791 41 1 -0.4394 2.4712 6.3567 42 1 -0.2315 4.2000 6.7256 43 1 -0.5334 2.9460 3.9611 44 1 -1.7177 3.9781 4.7981 45 1 -0.1682 4.6635 4.2528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087839744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:54 Heat of formation + Delta-G solvation = 7.378583 kcal Electronic energy + Delta-G solvation = -25618.408697 eV Core-core repulsion = 22148.679844 eV Total energy + Delta-G solvation = -3469.728852 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.97828 -38.50593 -37.30493 -34.06150 -32.85774 -32.70686 -31.76514 -29.78030 -28.71837 -26.62470 -25.40167 -24.28198 -22.53523 -22.35625 -21.17302 -20.22502 -19.96237 -18.46608 -18.19545 -16.82584 -15.98211 -15.91824 -15.08869 -14.88835 -14.69109 -14.15525 -14.03116 -13.85039 -13.76250 -13.62848 -13.15291 -13.05122 -12.70606 -12.45486 -12.03322 -11.98827 -11.92534 -11.64621 -11.58015 -11.17136 -11.10541 -10.88618 -10.83605 -10.79989 -10.60706 -10.43714 -10.26963 -10.10547 -9.74968 -9.65133 -9.62742 -9.01763 -8.63690 -8.61604 -8.53994 -6.80884 -5.75305 -3.11842 0.39871 1.33907 1.72942 2.25564 3.29121 3.30875 3.39691 3.44435 3.45200 4.47916 4.64023 4.81508 5.00840 5.06461 5.25353 5.31235 5.36170 5.41099 5.51602 5.54953 5.57696 5.67555 5.76417 5.80742 5.84998 5.87979 5.97910 6.07107 6.14386 6.23175 6.25182 6.32596 6.41244 6.42340 6.48255 6.57356 6.68187 6.74200 6.95355 7.14498 7.50828 7.60048 7.68731 7.78576 8.25935 8.35245 9.17936 9.78910 10.46898 11.36576 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.003198 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.926779 B = 8754.487261 C = 9000.168784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.024 4.024 4 C -0.146 4.146 5 C -0.233 4.233 6 S 0.194 5.806 7 C -0.262 4.262 8 C 0.588 3.412 9 O -0.525 6.525 10 N -0.710 5.710 11 C 0.139 3.861 12 H 0.097 0.903 13 C -0.157 4.157 14 C 0.175 3.825 15 N -0.594 5.594 16 C -0.229 4.229 17 H 0.074 0.926 18 C -0.002 4.002 19 N -0.916 5.916 20 Si 0.910 3.090 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.161 3.839 25 H 0.034 0.966 26 C -0.131 4.131 27 C -0.147 4.147 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.394 0.606 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 1.317 -21.749 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.039 4.039 4 C -0.177 4.177 5 C -0.371 4.371 6 S 0.463 5.537 7 C -0.383 4.383 8 C 0.374 3.626 9 O -0.404 6.404 10 N -0.359 5.359 11 C 0.035 3.965 12 H 0.115 0.885 13 C -0.196 4.196 14 C 0.049 3.951 15 N -0.318 5.318 16 C -0.357 4.357 17 H 0.092 0.908 18 C -0.200 4.200 19 N -0.562 5.562 20 Si 0.740 3.260 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.052 3.948 25 H 0.052 0.948 26 C -0.171 4.171 27 C -0.205 4.205 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.228 0.772 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.005 1.834 -20.507 20.614 hybrid contribution -0.180 -0.080 -0.270 0.334 sum -1.185 1.754 -20.777 20.885 Atomic orbital electron populations 1.21599 0.94319 1.01741 1.01733 1.20407 0.96515 0.90569 1.03558 1.19523 0.96420 0.97495 0.90416 1.19909 1.03951 0.94235 0.99634 1.25224 1.08487 1.01459 1.01891 1.83107 1.59916 1.12029 0.98667 1.24568 1.16371 0.99434 0.97882 1.16872 0.78003 0.85179 0.82562 1.90787 1.45826 1.18790 1.84984 1.45974 1.66676 1.16450 1.06848 1.22148 0.98630 0.97034 0.78682 0.88492 1.23437 0.96598 0.99761 0.99846 1.21433 0.98098 0.86868 0.88660 1.44431 1.59850 1.19128 1.08414 1.18889 1.40643 0.91394 0.84815 0.90780 1.24904 1.01663 0.96072 0.97313 1.69917 1.50346 1.13114 1.22865 0.86235 0.77839 0.79527 0.82351 1.21090 1.21608 1.21134 1.21082 0.91857 0.93958 0.87863 0.94841 1.22007 0.97033 1.01920 0.96133 1.21772 0.99702 1.00669 0.98325 0.92387 0.92054 0.93421 0.91527 0.88571 0.83994 0.81559 0.77225 0.91820 0.92050 0.90791 0.95363 0.93567 0.92313 0.91686 0.93341 0.93659 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.77 37.15 0.36 -1.12 16 2 C -0.07 -0.80 5.50 -27.89 -0.15 -0.96 16 3 C -0.02 -0.27 5.16 -105.47 -0.54 -0.82 16 4 C -0.15 -1.36 9.96 -41.42 -0.41 -1.77 16 5 C -0.23 -1.98 10.92 29.18 0.32 -1.66 16 6 S 0.19 1.89 22.16 -107.50 -2.38 -0.49 16 7 C -0.26 -3.35 6.45 -36.79 -0.24 -3.59 16 8 C 0.59 9.05 7.78 -12.89 -0.10 8.95 16 9 O -0.53 -9.41 13.35 5.19 0.07 -9.34 16 10 N -0.71 -10.72 4.91 -53.37 -0.26 -10.99 16 11 C 0.14 2.52 2.02 -66.10 -0.13 2.38 16 12 H 0.10 1.89 7.18 -51.93 -0.37 1.52 16 13 C -0.16 -3.06 6.77 -24.58 -0.17 -3.23 16 14 C 0.17 4.19 5.41 -2.52 -0.01 4.18 16 15 N -0.59 -14.59 3.13 -162.57 -0.51 -15.10 16 16 C -0.23 -6.17 9.75 -15.06 -0.15 -6.31 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C 0.00 -0.07 5.47 -17.43 -0.10 -0.16 16 19 N -0.92 -26.43 10.58 55.49 0.59 -25.85 16 20 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.16 3.19 2.94 -66.96 -0.20 2.99 16 25 H 0.03 0.66 7.72 -51.92 -0.40 0.25 16 26 C -0.13 -2.45 5.41 -26.73 -0.14 -2.60 16 27 C -0.15 -2.22 9.58 37.16 0.36 -1.86 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.80 7.59 -51.93 -0.39 0.41 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.10 1.31 6.33 -51.93 -0.33 0.98 16 33 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.39 5.25 7.48 -40.82 -0.31 4.95 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.97 6.93 -51.93 -0.36 1.61 16 39 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 41 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 42 H 0.06 1.30 7.90 -51.93 -0.41 0.89 16 43 H 0.05 0.74 7.41 -51.93 -0.38 0.35 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -30.06 371.79 -10.37 -40.43 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.14 Total: 4.62 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.31 Total: -5.58 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.18 Total: -51.93 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.06 -10.37 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087839744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.805 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds