Wall clock time and date at job start Tue Mar 31 2020 13:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50706 * 109.47482 * 2 1 4 4 C 1.37474 * 123.35465 * 265.22764 * 3 2 1 5 5 C 1.33808 * 115.10287 * 180.28545 * 4 3 2 6 6 S 1.70623 * 110.95373 * 359.72892 * 5 4 3 7 7 C 1.36644 * 123.34981 * 84.99600 * 3 2 1 8 8 C 1.46584 * 125.45703 * 0.02562 * 7 3 2 9 9 O 1.21704 * 120.00309 * 359.70819 * 8 7 3 10 10 N 1.34780 * 120.00131 * 179.97438 * 8 7 3 11 11 C 1.46493 * 120.00336 * 179.72037 * 10 8 7 12 12 H 1.09002 * 110.64069 * 328.14242 * 11 10 8 13 13 C 1.55155 * 110.71946 * 91.47585 * 11 10 8 14 14 C 1.54913 * 101.58245 * 153.86589 * 13 11 10 15 15 N 1.47429 * 104.83212 * 322.99317 * 14 13 11 16 16 C 1.36935 * 125.64512 * 204.16278 * 15 14 13 17 17 H 1.08006 * 119.99603 * 165.32983 * 16 15 14 18 18 C 1.38806 * 120.00576 * 345.32824 * 16 15 14 19 19 N 1.31623 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00243 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46975 * 60.00311 * 20 18 16 22 22 H 1.48498 * 109.47119 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47571 * 300.00300 * 20 18 16 24 24 C 1.47018 * 108.70130 * 24.12808 * 15 14 13 25 25 H 1.09010 * 109.88386 * 239.52412 * 24 15 14 26 26 C 1.52999 * 109.88377 * 118.35825 * 24 15 14 27 27 C 1.52996 * 109.47240 * 176.98246 * 26 24 15 28 28 H 1.09005 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47032 * 299.99945 * 1 2 3 30 30 H 1.09004 * 109.47215 * 59.99761 * 1 2 3 31 31 H 1.09003 * 109.47382 * 240.00470 * 2 1 3 32 32 H 1.08995 * 109.47793 * 120.00312 * 2 1 3 33 33 H 1.08008 * 122.44588 * 0.03612 * 4 3 2 34 34 H 1.08001 * 124.52477 * 179.72210 * 5 4 3 35 35 H 0.97008 * 119.99377 * 359.72656 * 10 8 7 36 36 H 1.08997 * 111.01185 * 271.94250 * 13 11 10 37 37 H 1.09006 * 111.00276 * 35.79468 * 13 11 10 38 38 H 1.09005 * 110.36589 * 204.15452 * 14 13 11 39 39 H 1.08997 * 110.36816 * 81.82990 * 14 13 11 40 40 H 0.96997 * 120.00166 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.46972 * 296.98218 * 26 24 15 42 42 H 1.09003 * 109.47079 * 56.98149 * 26 24 15 43 43 H 1.08999 * 109.47139 * 65.65376 * 27 26 24 44 44 H 1.09003 * 109.47223 * 185.65958 * 27 26 24 45 45 H 1.08998 * 109.47273 * 305.65511 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3744 2.1016 -1.1443 5 6 2.8065 3.3534 -0.9524 6 16 2.7997 3.7537 0.7061 7 6 2.1889 2.1623 1.1371 8 6 1.9004 1.7022 2.4986 9 8 1.4795 0.5754 2.6839 10 7 2.0960 2.5289 3.5450 11 6 1.8018 2.0713 4.9051 12 1 0.9741 1.3620 4.9013 13 6 3.0625 1.4461 5.5586 14 6 2.7773 1.6730 7.0643 15 7 2.1180 2.9900 7.1292 16 6 2.0940 3.8175 8.2200 17 1 1.7976 4.8500 8.1080 18 6 2.4507 3.3295 9.4695 19 7 2.8125 2.0713 9.6059 20 14 2.4187 4.4587 10.9572 21 1 1.0417 4.9782 11.1548 22 1 2.8389 3.7007 12.1630 23 1 3.3494 5.5946 10.7367 24 6 1.4911 3.2679 5.8287 25 1 1.9074 4.1816 5.4043 26 6 -0.0222 3.4132 6.0009 27 6 -0.6559 3.7763 4.6566 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3035 1.6571 -2.1261 34 1 3.1181 4.0211 -1.7420 35 1 2.4316 3.4270 3.3973 36 1 3.1343 0.3826 5.3306 37 1 3.9652 1.9724 5.2483 38 1 3.7096 1.6872 7.6290 39 1 2.1135 0.8972 7.4458 40 1 3.0614 1.7302 10.4791 41 1 -0.4394 2.4712 6.3567 42 1 -0.2315 4.2000 6.7256 43 1 -0.5334 2.9460 3.9611 44 1 -1.7177 3.9781 4.7981 45 1 -0.1682 4.6635 4.2528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087839744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:53 Heat of formation + Delta-G solvation = -9.516883 kcal Electronic energy + Delta-G solvation = -25619.141339 eV Core-core repulsion = 22148.679844 eV Total energy + Delta-G solvation = -3470.461495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20963 -39.74854 -38.55612 -35.64236 -34.34321 -33.63342 -33.51678 -31.20952 -30.10716 -28.10402 -26.65721 -25.88052 -23.84639 -23.26907 -22.53653 -21.85530 -21.48542 -19.63310 -19.12795 -18.70600 -17.33677 -16.92621 -16.69811 -16.09555 -16.02225 -15.72593 -15.43626 -15.06906 -14.98439 -14.62077 -14.48374 -14.29148 -13.92345 -13.73201 -13.56599 -13.24972 -13.24067 -12.88625 -12.81334 -12.68616 -12.62508 -12.38033 -12.24193 -12.07088 -12.03348 -11.97368 -11.88763 -11.62057 -11.57962 -11.37952 -10.88205 -10.66188 -10.11824 -9.69343 -9.36947 -8.83315 -7.84913 -5.23315 -0.43497 0.55322 0.98763 1.45333 1.47688 1.50494 1.56606 2.06735 2.19229 2.52094 3.34774 3.54499 3.81042 3.86656 3.90036 3.93057 4.17163 4.20341 4.33946 4.36274 4.39478 4.50470 4.56057 4.58637 4.62585 4.72424 4.79415 4.83028 4.92561 5.00279 5.10873 5.11871 5.14141 5.16735 5.27128 5.34830 5.42983 5.46074 5.48881 5.56534 5.57751 5.64186 5.71073 6.23233 6.48340 7.09064 7.16598 7.76490 8.44006 9.26194 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.003198 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.926779 B = 8754.487261 C = 9000.168784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.022 4.022 4 C -0.157 4.157 5 C -0.213 4.213 6 S 0.218 5.782 7 C -0.304 4.304 8 C 0.588 3.412 9 O -0.559 6.559 10 N -0.703 5.703 11 C 0.159 3.841 12 H 0.082 0.918 13 C -0.142 4.142 14 C 0.183 3.817 15 N -0.612 5.612 16 C -0.235 4.235 17 H 0.082 0.918 18 C -0.061 4.061 19 N -0.949 5.949 20 Si 0.976 3.024 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.275 1.275 24 C 0.159 3.841 25 H 0.049 0.951 26 C -0.125 4.125 27 C -0.134 4.134 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.169 0.831 34 H 0.201 0.799 35 H 0.405 0.595 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.042 0.958 39 H -0.005 1.005 40 H 0.247 0.753 41 H 0.037 0.963 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 3.446 -25.016 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 C -0.038 4.038 4 C -0.187 4.187 5 C -0.351 4.351 6 S 0.486 5.514 7 C -0.424 4.424 8 C 0.377 3.623 9 O -0.439 6.439 10 N -0.353 5.353 11 C 0.053 3.947 12 H 0.100 0.900 13 C -0.182 4.182 14 C 0.058 3.942 15 N -0.337 5.337 16 C -0.364 4.364 17 H 0.100 0.900 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.804 3.196 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.201 1.201 24 C 0.052 3.948 25 H 0.067 0.933 26 C -0.165 4.165 27 C -0.191 4.191 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.186 0.814 34 H 0.218 0.782 35 H 0.241 0.759 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.013 0.987 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.015 4.007 -23.821 24.177 hybrid contribution -0.171 -0.727 0.621 0.971 sum -1.186 3.280 -23.200 23.461 Atomic orbital electron populations 1.21546 0.94159 1.02035 1.01138 1.20402 0.96653 0.90857 1.03311 1.19783 0.95475 0.97464 0.91044 1.20100 1.04227 0.94518 0.99872 1.25690 1.06037 1.01455 1.01873 1.83009 1.59052 1.09657 0.99638 1.24354 1.19614 1.01923 0.96500 1.17252 0.76978 0.84570 0.83539 1.90772 1.47239 1.20227 1.85706 1.45737 1.67025 1.17072 1.05487 1.21668 0.97105 0.95815 0.80069 0.90043 1.23247 0.97822 1.00421 0.96665 1.21127 0.95763 0.86257 0.91099 1.44664 1.60714 1.18779 1.09541 1.19265 1.39383 0.92088 0.85651 0.90020 1.25711 1.02160 0.97483 1.00095 1.70133 1.51872 1.14880 1.22795 0.85201 0.78053 0.77765 0.78595 1.20370 1.22374 1.20074 1.21247 0.92418 0.95041 0.86123 0.93326 1.21890 0.96196 1.00385 0.98006 1.21646 1.00533 1.01215 0.95749 0.91744 0.94843 0.91618 0.89021 0.91496 0.81404 0.78213 0.75913 0.91386 0.90976 0.93988 0.98679 0.94365 0.94461 0.93018 0.93613 0.92065 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.77 71.98 0.70 -2.04 16 2 C -0.07 -1.57 5.50 29.85 0.16 -1.41 16 3 C -0.02 -0.46 5.16 -20.42 -0.11 -0.56 16 4 C -0.16 -2.33 9.96 21.08 0.21 -2.12 16 5 C -0.21 -2.68 10.92 66.81 0.73 -1.95 16 6 S 0.22 3.59 22.16 -56.49 -1.25 2.34 16 7 C -0.30 -7.32 6.45 24.08 0.16 -7.16 16 8 C 0.59 17.96 7.78 86.42 0.67 18.63 16 9 O -0.56 -20.53 13.35 -4.36 -0.06 -20.59 16 10 N -0.70 -20.76 4.91 -440.96 -2.17 -22.93 16 11 C 0.16 5.81 2.02 46.18 0.09 5.90 16 12 H 0.08 3.28 7.18 -2.39 -0.02 3.26 16 13 C -0.14 -5.68 6.77 31.99 0.22 -5.47 16 14 C 0.18 9.25 5.41 86.86 0.47 9.72 16 15 N -0.61 -30.87 3.13 -668.24 -2.09 -32.96 16 16 C -0.23 -12.84 9.75 84.03 0.82 -12.02 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.06 -3.44 5.47 84.86 0.46 -2.97 16 19 N -0.95 -57.07 10.58 21.65 0.23 -56.84 16 20 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.16 6.30 2.94 45.34 0.13 6.43 16 25 H 0.05 1.82 7.72 -2.38 -0.02 1.80 16 26 C -0.13 -4.68 5.41 30.59 0.17 -4.51 16 27 C -0.13 -3.82 9.58 71.98 0.69 -3.13 16 28 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.03 0.87 7.59 -2.39 -0.02 0.85 16 30 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 32 H 0.07 1.85 6.33 -2.39 -0.02 1.84 16 33 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.40 10.15 7.48 -92.70 -0.69 9.46 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 38 H 0.04 2.36 6.93 -2.38 -0.02 2.34 16 39 H 0.00 -0.27 8.06 -2.39 -0.02 -0.29 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.04 1.53 8.07 -2.39 -0.02 1.51 16 42 H 0.05 2.05 7.90 -2.39 -0.02 2.03 16 43 H 0.04 1.34 7.41 -2.39 -0.02 1.32 16 44 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.35 371.79 2.56 -65.79 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.29 Total: 20.47 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.58 Total: -2.65 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -4.03 Total: -112.73 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.06 Total: -20.59 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.25 Total: 2.34 kcal Total: -68.35 2.56 -65.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087839744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.269 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds