Wall clock time and date at job start Tue Mar 31 2020 13:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46824 * 2 1 4 4 C 1.50703 * 109.47063 * 180.02562 * 3 2 1 5 5 C 1.33820 * 124.52170 * 90.01797 * 4 3 2 6 6 C 1.37477 * 115.09995 * 179.97438 * 5 4 3 7 7 C 1.36653 * 113.29731 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.45735 * 180.26523 * 7 6 5 9 9 O 1.21697 * 120.00168 * 359.72040 * 8 7 6 10 10 N 1.34778 * 119.99949 * 179.71779 * 8 7 6 11 11 C 1.46497 * 120.00222 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.64071 * 325.70619 * 11 10 8 13 13 C 1.55156 * 110.72043 * 88.84334 * 11 10 8 14 14 C 1.54909 * 101.58582 * 153.86688 * 13 11 10 15 15 N 1.47425 * 104.82943 * 322.98978 * 14 13 11 16 16 C 1.36937 * 125.64948 * 204.15833 * 15 14 13 17 17 H 1.07999 * 119.99935 * 179.97438 * 16 15 14 18 18 C 1.38818 * 119.99938 * 359.97438 * 16 15 14 19 19 N 1.31613 * 119.99738 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46986 * 89.99725 * 20 18 16 22 22 H 1.48497 * 109.47237 * 209.99558 * 20 18 16 23 23 H 1.48505 * 109.47152 * 329.99970 * 20 18 16 24 24 C 1.47323 * 108.73689 * 24.28489 * 15 14 13 25 25 H 1.09003 * 109.84620 * 239.38614 * 24 15 14 26 26 C 1.53000 * 110.06460 * 118.12826 * 24 15 14 27 27 S 1.70614 * 124.52091 * 269.97449 * 4 3 2 28 28 H 1.08993 * 109.47520 * 59.99800 * 1 2 3 29 29 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47086 * 299.99451 * 1 2 3 31 31 H 1.09000 * 109.47086 * 240.00549 * 2 1 3 32 32 H 1.09002 * 109.47670 * 119.99963 * 2 1 3 33 33 H 1.08993 * 109.47133 * 60.00621 * 3 2 1 34 34 H 1.09004 * 109.47092 * 299.99861 * 3 2 1 35 35 H 1.07995 * 122.45037 * 359.93942 * 5 4 3 36 36 H 1.07990 * 123.35307 * 179.97438 * 6 5 4 37 37 H 0.97005 * 120.00165 * 0.02562 * 10 8 7 38 38 H 1.09003 * 111.00557 * 271.93776 * 13 11 10 39 39 H 1.08996 * 111.00756 * 35.79090 * 13 11 10 40 40 H 1.08997 * 110.36469 * 81.82573 * 14 13 11 41 41 H 1.08997 * 110.36844 * 204.15075 * 14 13 11 42 42 H 0.96997 * 119.99879 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.46891 * 302.26298 * 26 24 15 44 44 H 1.08995 * 109.47144 * 62.26398 * 26 24 15 45 45 H 1.09002 * 109.46889 * 182.26775 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3048 1.4432 -1.1035 6 6 5.6611 1.4437 -0.8790 7 6 5.9894 1.4441 0.4475 8 6 7.3526 1.4502 0.9861 9 8 8.3058 1.4503 0.2295 10 7 7.5505 1.4557 2.3192 11 6 8.9129 1.4613 2.8576 12 1 9.5814 0.8859 2.2172 13 6 9.4305 2.9142 3.0266 14 6 10.4714 2.7436 4.1611 15 7 9.8832 1.7384 5.0649 16 6 10.1743 1.5936 6.3951 17 1 9.6869 0.8229 6.9738 18 6 11.0958 2.4375 6.9998 19 7 11.6901 3.3764 6.2945 20 14 11.4924 2.2404 8.8145 21 1 12.6265 1.2950 8.9735 22 1 11.8639 3.5597 9.3861 23 1 10.3021 1.7099 9.5266 24 6 8.9323 0.9130 4.3000 25 1 7.9379 0.9907 4.7396 26 6 9.3899 -0.5470 4.2957 27 16 4.5144 1.4431 1.4047 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.8820 1.4426 -2.0972 36 1 6.3942 1.4437 -1.6720 37 1 6.7907 1.4553 2.9223 38 1 9.9047 3.2690 2.1115 39 1 8.6256 3.5826 3.3322 40 1 11.4173 2.3830 3.7569 41 1 10.6176 3.6872 4.6868 42 1 12.3343 3.9658 6.7169 43 1 10.3923 -0.6123 3.8725 44 1 9.4012 -0.9272 5.3171 45 1 8.7022 -1.1414 3.6942 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088595471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:18 Heat of formation + Delta-G solvation = 5.156235 kcal Electronic energy + Delta-G solvation = -24445.591579 eV Core-core repulsion = 20975.766359 eV Total energy + Delta-G solvation = -3469.825220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.77285 -38.34495 -37.37800 -35.18008 -34.04184 -32.09014 -30.66189 -30.33365 -28.74139 -27.12208 -24.85071 -24.01029 -23.78299 -21.84010 -21.51627 -20.19963 -20.06155 -18.94806 -17.95890 -16.78037 -16.32001 -15.91360 -15.31720 -15.01588 -14.85503 -14.64277 -14.11290 -13.96362 -13.86763 -13.53465 -13.33654 -12.96352 -12.74995 -12.61627 -12.14515 -12.10544 -11.98620 -11.80644 -11.59080 -11.56388 -11.22964 -11.14084 -10.97966 -10.87001 -10.83411 -10.56037 -10.43787 -10.09687 -9.85519 -9.75449 -9.56390 -8.91812 -8.77595 -8.67472 -8.58192 -6.88298 -5.65743 -3.08662 0.36484 1.27681 1.70531 2.25330 3.27879 3.30065 3.39535 3.44667 3.46425 4.28560 4.47618 4.53977 4.62515 4.84629 4.93132 5.07465 5.16540 5.28519 5.29016 5.36897 5.39056 5.41699 5.53195 5.62169 5.64192 5.68916 5.80645 5.83028 5.86516 5.99034 6.11775 6.18864 6.23993 6.29902 6.33986 6.52629 6.59525 6.71661 6.85358 7.09164 7.51378 7.61747 7.65463 7.84887 8.30130 8.35364 9.20098 9.80703 10.44776 11.37618 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021533 B = 0.002591 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.011239 B =10806.057372 C =11495.464144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.051 4.051 4 C -0.196 4.196 5 C -0.152 4.152 6 C -0.057 4.057 7 C -0.260 4.260 8 C 0.588 3.412 9 O -0.532 6.532 10 N -0.711 5.711 11 C 0.135 3.865 12 H 0.095 0.905 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.220 4.220 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.154 3.846 25 H 0.036 0.964 26 C -0.155 4.155 27 S 0.201 5.799 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.394 0.606 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.110 0.890 42 H 0.252 0.748 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.865 -4.567 -13.503 25.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.316 4.316 5 C -0.183 4.183 6 C -0.090 4.090 7 C -0.380 4.380 8 C 0.373 3.627 9 O -0.410 6.410 10 N -0.360 5.360 11 C 0.031 3.969 12 H 0.113 0.887 13 C -0.193 4.193 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.348 4.348 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.046 3.954 25 H 0.054 0.946 26 C -0.215 4.215 27 S 0.470 5.530 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.128 0.872 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -20.326 -4.453 -12.275 24.159 hybrid contribution 0.197 -0.158 -0.435 0.503 sum -20.129 -4.612 -12.710 24.248 Atomic orbital electron populations 1.21780 0.95301 1.01988 1.01968 1.21572 0.95954 0.95534 1.02852 1.20251 0.87137 0.98081 1.03572 1.24239 1.01079 1.08392 0.97876 1.19936 0.92593 1.06303 0.99477 1.20738 0.96106 0.96908 0.95246 1.24708 0.97010 1.18251 0.98054 1.16925 0.86572 0.76684 0.82512 1.90820 1.41766 1.50433 1.58009 1.45974 1.09738 1.74439 1.05879 1.22211 0.81251 0.98409 0.94996 0.88703 1.23411 1.00648 0.94775 1.00447 1.21957 0.90920 0.96678 0.87634 1.44565 1.46940 1.34603 1.05933 1.19024 1.19293 1.13289 0.83218 0.90450 1.24792 0.99136 0.98367 0.98340 1.69792 1.31286 1.21640 1.34188 0.86075 0.78124 0.76903 0.84394 1.21652 1.21679 1.20726 1.21050 0.94271 0.90937 0.89114 0.94620 1.22233 1.00667 0.97370 1.01206 1.83069 0.94349 1.68034 1.07596 0.92588 0.92430 0.92550 0.91481 0.91600 0.90553 0.89834 0.84023 0.83014 0.77122 0.91861 0.91949 0.96701 0.87243 0.93684 0.92832 0.92633 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.15 0.37 -0.38 16 2 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 3 C -0.05 -0.33 5.65 -27.88 -0.16 -0.49 16 4 C -0.20 -1.73 5.53 -35.86 -0.20 -1.93 16 5 C -0.15 -1.41 10.00 -41.41 -0.41 -1.83 16 6 C -0.06 -0.66 10.01 -40.43 -0.40 -1.07 16 7 C -0.26 -3.39 6.45 -36.79 -0.24 -3.63 16 8 C 0.59 9.55 7.78 -12.90 -0.10 9.45 16 9 O -0.53 -10.41 16.52 5.19 0.09 -10.33 16 10 N -0.71 -11.22 5.19 -53.37 -0.28 -11.50 16 11 C 0.14 2.54 2.79 -66.10 -0.18 2.35 16 12 H 0.09 1.89 7.33 -51.93 -0.38 1.51 16 13 C -0.15 -3.10 6.77 -24.58 -0.17 -3.27 16 14 C 0.15 3.75 5.89 -2.53 -0.01 3.74 16 15 N -0.60 -14.85 3.14 -162.35 -0.51 -15.36 16 16 C -0.22 -5.97 9.91 -15.06 -0.15 -6.12 16 17 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.15 3.13 3.49 -66.79 -0.23 2.89 16 25 H 0.04 0.71 7.70 -51.93 -0.40 0.31 16 26 C -0.16 -2.90 9.15 37.16 0.34 -2.56 16 27 S 0.20 2.02 22.10 -107.50 -2.38 -0.36 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.39 5.40 7.45 -40.82 -0.30 5.10 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 2.99 5.87 -51.93 -0.31 2.69 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -31.08 379.02 -10.91 -41.98 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.27 Total: 3.20 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.81 Total: -4.11 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.23 Total: -52.93 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.38 Total: -0.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.08 -10.91 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088595471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.140 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds