Wall clock time and date at job start Tue Mar 31 2020 13:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46824 * 2 1 4 4 C 1.50703 * 109.47063 * 180.02562 * 3 2 1 5 5 C 1.33820 * 124.52170 * 90.01797 * 4 3 2 6 6 C 1.37477 * 115.09995 * 179.97438 * 5 4 3 7 7 C 1.36653 * 113.29731 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.45735 * 180.26523 * 7 6 5 9 9 O 1.21697 * 120.00168 * 359.72040 * 8 7 6 10 10 N 1.34778 * 119.99949 * 179.71779 * 8 7 6 11 11 C 1.46497 * 120.00222 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.64071 * 325.70619 * 11 10 8 13 13 C 1.55156 * 110.72043 * 88.84334 * 11 10 8 14 14 C 1.54909 * 101.58582 * 153.86688 * 13 11 10 15 15 N 1.47425 * 104.82943 * 322.98978 * 14 13 11 16 16 C 1.36937 * 125.64948 * 204.15833 * 15 14 13 17 17 H 1.07999 * 119.99935 * 179.97438 * 16 15 14 18 18 C 1.38818 * 119.99938 * 359.97438 * 16 15 14 19 19 N 1.31613 * 119.99738 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46986 * 89.99725 * 20 18 16 22 22 H 1.48497 * 109.47237 * 209.99558 * 20 18 16 23 23 H 1.48505 * 109.47152 * 329.99970 * 20 18 16 24 24 C 1.47323 * 108.73689 * 24.28489 * 15 14 13 25 25 H 1.09003 * 109.84620 * 239.38614 * 24 15 14 26 26 C 1.53000 * 110.06460 * 118.12826 * 24 15 14 27 27 S 1.70614 * 124.52091 * 269.97449 * 4 3 2 28 28 H 1.08993 * 109.47520 * 59.99800 * 1 2 3 29 29 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47086 * 299.99451 * 1 2 3 31 31 H 1.09000 * 109.47086 * 240.00549 * 2 1 3 32 32 H 1.09002 * 109.47670 * 119.99963 * 2 1 3 33 33 H 1.08993 * 109.47133 * 60.00621 * 3 2 1 34 34 H 1.09004 * 109.47092 * 299.99861 * 3 2 1 35 35 H 1.07995 * 122.45037 * 359.93942 * 5 4 3 36 36 H 1.07990 * 123.35307 * 179.97438 * 6 5 4 37 37 H 0.97005 * 120.00165 * 0.02562 * 10 8 7 38 38 H 1.09003 * 111.00557 * 271.93776 * 13 11 10 39 39 H 1.08996 * 111.00756 * 35.79090 * 13 11 10 40 40 H 1.08997 * 110.36469 * 81.82573 * 14 13 11 41 41 H 1.08997 * 110.36844 * 204.15075 * 14 13 11 42 42 H 0.96997 * 119.99879 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.46891 * 302.26298 * 26 24 15 44 44 H 1.08995 * 109.47144 * 62.26398 * 26 24 15 45 45 H 1.09002 * 109.46889 * 182.26775 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3048 1.4432 -1.1035 6 6 5.6611 1.4437 -0.8790 7 6 5.9894 1.4441 0.4475 8 6 7.3526 1.4502 0.9861 9 8 8.3058 1.4503 0.2295 10 7 7.5505 1.4557 2.3192 11 6 8.9129 1.4613 2.8576 12 1 9.5814 0.8859 2.2172 13 6 9.4305 2.9142 3.0266 14 6 10.4714 2.7436 4.1611 15 7 9.8832 1.7384 5.0649 16 6 10.1743 1.5936 6.3951 17 1 9.6869 0.8229 6.9738 18 6 11.0958 2.4375 6.9998 19 7 11.6901 3.3764 6.2945 20 14 11.4924 2.2404 8.8145 21 1 12.6265 1.2950 8.9735 22 1 11.8639 3.5597 9.3861 23 1 10.3021 1.7099 9.5266 24 6 8.9323 0.9130 4.3000 25 1 7.9379 0.9907 4.7396 26 6 9.3899 -0.5470 4.2957 27 16 4.5144 1.4431 1.4047 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.8820 1.4426 -2.0972 36 1 6.3942 1.4437 -1.6720 37 1 6.7907 1.4553 2.9223 38 1 9.9047 3.2690 2.1115 39 1 8.6256 3.5826 3.3322 40 1 11.4173 2.3830 3.7569 41 1 10.6176 3.6872 4.6868 42 1 12.3343 3.9658 6.7169 43 1 10.3923 -0.6123 3.8725 44 1 9.4012 -0.9272 5.3171 45 1 8.7022 -1.1414 3.6942 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088595471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:17 Heat of formation + Delta-G solvation = -12.132021 kcal Electronic energy + Delta-G solvation = -24446.341254 eV Core-core repulsion = 20975.766359 eV Total energy + Delta-G solvation = -3470.574895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10840 -39.47612 -38.70295 -35.76830 -35.65100 -33.90479 -32.10908 -31.44863 -30.41922 -28.07339 -26.33910 -25.82313 -24.64410 -22.77014 -22.31970 -21.86037 -21.64520 -20.08158 -19.03716 -18.65448 -17.49115 -17.10899 -16.64194 -16.11404 -16.05895 -15.76910 -15.73037 -15.30405 -14.82793 -14.62941 -14.42829 -14.15233 -14.02104 -13.77959 -13.52279 -13.31821 -13.26802 -12.94121 -12.76637 -12.73404 -12.61061 -12.35381 -12.26570 -12.14032 -12.05283 -11.98074 -11.89508 -11.59407 -11.49881 -11.47826 -11.18170 -10.73547 -10.19804 -9.63419 -9.53395 -8.91147 -7.74618 -5.19902 -0.51805 0.45232 0.90423 1.38364 1.48819 1.50526 1.58948 1.99529 2.14704 2.52279 3.35897 3.51454 3.68168 3.80066 3.83922 3.92187 4.08258 4.16745 4.18058 4.30853 4.43570 4.46846 4.58919 4.62437 4.63720 4.74329 4.78066 4.86871 4.89549 4.98359 5.01143 5.05119 5.08179 5.17116 5.25081 5.31011 5.31137 5.43714 5.47709 5.49492 5.54821 5.58619 5.79073 6.29747 6.39384 7.05888 7.10854 7.77891 8.41840 9.27479 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021533 B = 0.002591 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.011239 B =10806.057372 C =11495.464144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.052 4.052 4 C -0.180 4.180 5 C -0.160 4.160 6 C -0.051 4.051 7 C -0.301 4.301 8 C 0.589 3.411 9 O -0.574 6.574 10 N -0.703 5.703 11 C 0.152 3.848 12 H 0.083 0.917 13 C -0.139 4.139 14 C 0.159 3.841 15 N -0.613 5.613 16 C -0.226 4.226 17 H 0.086 0.914 18 C -0.070 4.070 19 N -0.951 5.951 20 Si 0.980 3.020 21 H -0.290 1.290 22 H -0.296 1.296 23 H -0.266 1.266 24 C 0.150 3.850 25 H 0.052 0.948 26 C -0.147 4.147 27 S 0.226 5.774 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.168 0.832 36 H 0.148 0.852 37 H 0.407 0.593 38 H 0.066 0.934 39 H 0.069 0.931 40 H -0.013 1.013 41 H 0.080 0.920 42 H 0.246 0.754 43 H 0.037 0.963 44 H 0.050 0.950 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.156 -5.471 -13.825 28.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.091 4.091 4 C -0.300 4.300 5 C -0.189 4.189 6 C -0.085 4.085 7 C -0.421 4.421 8 C 0.377 3.623 9 O -0.455 6.455 10 N -0.353 5.353 11 C 0.047 3.953 12 H 0.101 0.899 13 C -0.179 4.179 14 C 0.033 3.967 15 N -0.339 5.339 16 C -0.355 4.355 17 H 0.104 0.896 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.808 3.192 21 H -0.217 1.217 22 H -0.223 1.223 23 H -0.191 1.191 24 C 0.044 3.956 25 H 0.069 0.931 26 C -0.206 4.206 27 S 0.495 5.505 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.185 0.815 36 H 0.166 0.834 37 H 0.243 0.757 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.005 0.995 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.675 -5.387 -12.590 27.350 hybrid contribution 1.090 0.096 -0.415 1.170 sum -22.585 -5.290 -13.005 26.593 Atomic orbital electron populations 1.21768 0.94397 1.02272 1.02464 1.21557 0.96714 0.95006 1.02506 1.20400 0.85146 0.98692 1.04874 1.24661 1.02335 1.05833 0.97180 1.20112 0.91455 1.06457 1.00915 1.20940 0.97312 0.95548 0.94703 1.24424 0.96515 1.21940 0.99211 1.17325 0.87599 0.75344 0.81991 1.90792 1.43540 1.52374 1.58811 1.45754 1.08770 1.74532 1.06238 1.21799 0.82745 0.96701 0.94097 0.89887 1.23213 0.99608 0.96232 0.98829 1.21670 0.91231 0.95214 0.88587 1.44796 1.47614 1.35609 1.05849 1.19401 1.18819 1.12922 0.84368 0.89593 1.25631 0.99632 0.98537 1.02413 1.70038 1.31931 1.22556 1.35594 0.85052 0.78086 0.76307 0.79727 1.21745 1.22280 1.19104 1.21244 0.93832 0.91244 0.89318 0.93053 1.22118 1.00535 0.96513 1.01423 1.82944 0.92644 1.67464 1.07478 0.91872 0.92316 0.92298 0.91579 0.92280 0.89696 0.88126 0.81498 0.83430 0.75668 0.91533 0.91235 0.99536 0.90254 0.94432 0.94390 0.93039 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 71.98 0.71 -0.34 16 2 C -0.12 -1.07 5.92 30.59 0.18 -0.89 16 3 C -0.05 -0.48 5.65 29.85 0.17 -0.31 16 4 C -0.18 -2.63 5.53 24.68 0.14 -2.50 16 5 C -0.16 -2.53 10.00 21.09 0.21 -2.32 16 6 C -0.05 -1.11 10.01 21.72 0.22 -0.89 16 7 C -0.30 -7.50 6.45 24.08 0.16 -7.34 16 8 C 0.59 18.92 7.78 86.42 0.67 19.59 16 9 O -0.57 -22.74 16.52 -4.34 -0.07 -22.82 16 10 N -0.70 -21.54 5.19 -440.98 -2.29 -23.83 16 11 C 0.15 5.66 2.79 46.18 0.13 5.79 16 12 H 0.08 3.34 7.33 -2.39 -0.02 3.32 16 13 C -0.14 -5.72 6.77 31.99 0.22 -5.50 16 14 C 0.16 8.07 5.89 86.85 0.51 8.58 16 15 N -0.61 -30.97 3.14 -667.55 -2.10 -33.06 16 16 C -0.23 -12.32 9.91 84.03 0.83 -11.49 16 17 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 18 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 19 N -0.95 -56.83 10.09 21.65 0.22 -56.61 16 20 Si 0.98 45.34 29.55 68.60 2.03 47.36 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 C 0.15 5.99 3.49 45.28 0.16 6.15 16 25 H 0.05 1.92 7.70 -2.39 -0.02 1.90 16 26 C -0.15 -5.33 9.15 71.98 0.66 -4.67 16 27 S 0.23 4.01 22.10 -56.49 -1.25 2.76 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.40 8.14 -2.38 -0.02 0.39 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.15 3.26 8.06 -2.92 -0.02 3.23 16 37 H 0.41 10.46 7.45 -92.70 -0.69 9.77 16 38 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 40 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H 0.08 4.55 5.87 -2.39 -0.01 4.53 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.05 1.89 8.06 -2.39 -0.02 1.87 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -68.59 379.02 2.26 -66.34 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.29 Total: 19.49 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.43 Total: 0.38 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -4.16 Total: -113.50 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.07 Total: -22.82 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.25 Total: 2.76 kcal Total: -68.59 2.26 -66.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088595471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.203 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds