Wall clock time and date at job start Tue Mar 31 2020 13:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46893 * 2 1 4 4 S 1.70615 * 124.51965 * 270.02092 * 3 2 1 5 5 C 1.75834 * 91.56285 * 179.97438 * 4 3 2 6 6 C 1.46579 * 125.45777 * 180.02562 * 5 4 3 7 7 O 1.21703 * 119.99810 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00170 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27960 * 8 6 5 10 10 H 1.09001 * 110.64080 * 325.42452 * 9 8 6 11 11 C 1.55161 * 110.72417 * 88.56363 * 9 8 6 12 12 C 1.54907 * 101.58168 * 153.86445 * 11 9 8 13 13 N 1.47423 * 104.83090 * 322.99102 * 12 11 9 14 14 C 1.36946 * 125.64687 * 204.16524 * 13 12 11 15 15 H 1.07994 * 119.99965 * 179.97438 * 14 13 12 16 16 C 1.38814 * 120.00011 * 359.97438 * 14 13 12 17 17 N 1.31617 * 119.99930 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47094 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47117 * 120.00103 * 18 16 14 21 21 H 1.48497 * 109.47690 * 239.99987 * 18 16 14 22 22 C 1.47312 * 108.74100 * 24.28565 * 13 12 11 23 23 H 1.09002 * 109.85727 * 239.38914 * 22 13 12 24 24 C 1.53005 * 110.06518 * 118.12428 * 22 13 12 25 25 C 1.36645 * 109.07975 * 0.26517 * 5 4 3 26 26 C 1.33809 * 124.52201 * 90.00703 * 3 2 1 27 27 C 1.50696 * 122.45335 * 359.97438 * 26 3 2 28 28 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47364 * 299.99737 * 1 2 3 30 30 H 1.09002 * 109.47415 * 60.00086 * 1 2 3 31 31 H 1.08996 * 109.46885 * 239.99927 * 2 1 3 32 32 H 1.08997 * 109.46980 * 119.99750 * 2 1 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 34 34 H 1.08995 * 111.00154 * 271.93830 * 11 9 8 35 35 H 1.09003 * 110.99787 * 35.78963 * 11 9 8 36 36 H 1.08998 * 110.36729 * 81.82977 * 12 11 9 37 37 H 1.09004 * 110.36300 * 204.15699 * 12 11 9 38 38 H 0.96998 * 119.99965 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.46947 * 302.27388 * 24 22 13 40 40 H 1.08999 * 109.46515 * 62.27184 * 24 22 13 41 41 H 1.09002 * 109.47096 * 182.26876 * 24 22 13 42 42 H 1.07999 * 123.35184 * 179.73964 * 25 5 4 43 43 H 1.09006 * 109.46971 * 90.00638 * 27 26 3 44 44 H 1.08992 * 109.47736 * 210.00303 * 27 26 3 45 45 H 1.09004 * 109.47337 * 330.00930 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3541 2.3326 -1.4057 5 6 2.8454 3.7238 -0.4492 6 6 3.2986 5.0092 -0.9884 7 8 3.6167 5.9082 -0.2322 8 7 3.3632 5.1956 -2.3217 9 6 3.8220 6.4783 -2.8606 10 1 3.5029 7.3004 -2.2200 11 6 5.3642 6.4821 -3.0311 12 6 5.5491 7.5202 -4.1658 13 7 4.4044 7.3005 -5.0685 14 6 4.3637 7.6230 -6.3988 15 1 3.4741 7.4203 -6.9766 16 6 5.4659 8.2105 -7.0046 17 7 6.5502 8.4571 -6.3006 18 14 5.4106 8.6497 -8.8193 19 1 4.0881 8.2726 -9.3798 20 1 5.6177 10.1113 -8.9814 21 1 6.4816 7.9152 -9.5394 22 6 3.3102 6.6792 -4.3026 23 1 3.0515 5.7156 -4.7417 24 6 2.0861 7.5972 -4.2971 25 6 2.7420 3.4127 0.8774 26 6 2.2852 2.1358 1.1025 27 6 2.0883 1.5802 2.4894 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.1100 4.4790 -2.9244 34 1 5.8575 6.8110 -2.1165 35 1 5.7258 5.5003 -3.3369 36 1 5.5248 8.5323 -3.7618 37 1 6.4869 7.3435 -4.6925 38 1 7.3205 8.8673 -6.7240 39 1 2.3590 8.5640 -3.8744 40 1 1.7304 7.7343 -5.3182 41 1 1.2970 7.1469 -3.6948 42 1 2.9913 4.1025 1.6701 43 1 3.0098 1.1034 2.8239 44 1 1.8297 2.3897 3.1718 45 1 1.2833 0.8454 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089026742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:09 Heat of formation + Delta-G solvation = 5.981536 kcal Electronic energy + Delta-G solvation = -24723.896934 eV Core-core repulsion = 21254.107501 eV Total energy + Delta-G solvation = -3469.789433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82507 -38.74101 -37.42844 -34.05447 -34.03954 -32.06961 -30.63097 -30.33125 -28.71223 -27.66862 -25.58133 -24.04296 -23.83913 -22.59414 -20.78558 -20.19750 -19.82299 -18.66989 -17.95749 -16.78079 -16.36455 -15.92651 -15.04555 -14.85806 -14.65738 -14.55677 -14.23456 -13.94734 -13.76160 -13.52378 -13.25342 -12.92263 -12.80630 -12.48001 -12.38748 -12.14276 -12.09735 -11.80717 -11.63929 -11.58092 -11.44753 -11.14075 -10.96712 -10.87079 -10.84329 -10.55710 -10.43725 -10.07166 -9.85396 -9.75214 -9.56799 -8.88229 -8.69629 -8.64453 -8.50626 -6.88231 -5.65939 -3.08875 0.38088 1.30146 1.72585 2.20072 3.27332 3.29792 3.39145 3.44792 3.47090 4.34916 4.47408 4.63317 4.74781 4.88446 4.97363 5.05060 5.14779 5.28812 5.35171 5.41513 5.41721 5.45897 5.53201 5.56697 5.62102 5.63748 5.76074 5.81105 5.83455 6.10433 6.13038 6.23664 6.26391 6.30082 6.34144 6.52711 6.59593 6.71683 6.85466 7.09234 7.51411 7.62146 7.65638 7.84776 8.30287 8.35314 9.20026 9.80612 10.44591 11.37482 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.002685 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.497318 B =10424.251302 C =10944.048960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.200 4.200 4 S 0.199 5.801 5 C -0.257 4.257 6 C 0.588 3.412 7 O -0.532 6.532 8 N -0.710 5.710 9 C 0.135 3.865 10 H 0.095 0.905 11 C -0.153 4.153 12 C 0.153 3.847 13 N -0.595 5.595 14 C -0.219 4.219 15 H 0.078 0.922 16 C -0.011 4.011 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.155 3.845 23 H 0.036 0.964 24 C -0.155 4.155 25 C -0.053 4.053 26 C -0.121 4.121 27 C -0.093 4.093 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.395 0.605 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.015 0.985 37 H 0.110 0.890 38 H 0.252 0.748 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.152 0.848 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.713 -17.583 14.464 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.319 4.319 4 S 0.468 5.532 5 C -0.378 4.378 6 C 0.373 3.627 7 O -0.410 6.410 8 N -0.360 5.360 9 C 0.031 3.969 10 H 0.113 0.887 11 C -0.193 4.193 12 C 0.028 3.972 13 N -0.321 5.321 14 C -0.348 4.348 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.569 5.569 18 Si 0.745 3.255 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.047 3.953 23 H 0.054 0.946 24 C -0.215 4.215 25 C -0.086 4.086 26 C -0.134 4.134 27 C -0.152 4.152 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.128 0.872 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.169 0.831 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.443 -17.100 13.207 23.997 hybrid contribution -0.042 0.272 0.328 0.428 sum -10.485 -16.828 13.535 24.007 Atomic orbital electron populations 1.21796 0.94126 1.02071 1.02657 1.20122 0.96312 0.89471 1.03426 1.24032 1.08432 1.02064 0.97392 1.83032 1.60170 1.02488 1.07475 1.24623 1.15706 0.99407 0.98019 1.16918 0.77736 0.85494 0.82511 1.90821 1.49494 1.42667 1.58044 1.45967 1.67190 1.16987 1.05870 1.22215 0.95463 0.84195 0.94999 0.88699 1.23414 0.93910 1.01520 1.00450 1.21954 0.94661 0.92911 0.87646 1.44573 1.10093 1.71445 1.05946 1.19073 0.99232 1.33239 0.83208 0.90392 1.24791 0.96307 1.01209 0.98338 1.69804 1.04322 1.48695 1.34082 0.86005 0.77262 0.77796 0.84456 1.20553 1.21777 1.21767 1.21046 0.89745 0.95456 0.89098 0.94628 1.22232 0.97650 1.00386 1.01205 1.20601 0.97018 0.95739 0.95288 1.18642 1.04273 0.93993 0.96460 1.20506 1.02016 1.00999 0.91645 0.91929 0.92202 0.92297 0.90647 0.89840 0.77120 0.91860 0.91957 0.96698 0.87250 0.93734 0.92830 0.92634 0.94282 0.83067 0.91262 0.91350 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.05 -0.36 5.72 -27.88 -0.16 -0.52 16 3 C -0.20 -1.84 5.53 -35.86 -0.20 -2.04 16 4 S 0.20 2.05 22.10 -107.50 -2.38 -0.33 16 5 C -0.26 -3.42 6.45 -36.80 -0.24 -3.66 16 6 C 0.59 9.64 7.78 -12.90 -0.10 9.54 16 7 O -0.53 -10.47 16.53 5.19 0.09 -10.38 16 8 N -0.71 -11.30 5.19 -53.36 -0.28 -11.58 16 9 C 0.14 2.55 2.79 -66.09 -0.18 2.36 16 10 H 0.10 1.90 7.33 -51.93 -0.38 1.52 16 11 C -0.15 -3.11 6.77 -24.58 -0.17 -3.28 16 12 C 0.15 3.76 5.89 -2.53 -0.01 3.75 16 13 N -0.60 -14.88 3.14 -162.35 -0.51 -15.39 16 14 C -0.22 -5.96 9.91 -15.05 -0.15 -6.10 16 15 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 16 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 18 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 C 0.15 3.14 3.49 -66.79 -0.23 2.91 16 23 H 0.04 0.71 7.70 -51.93 -0.40 0.31 16 24 C -0.16 -2.91 9.15 37.16 0.34 -2.57 16 25 C -0.05 -0.64 9.80 -40.43 -0.40 -1.04 16 26 C -0.12 -1.18 5.78 -106.46 -0.62 -1.80 16 27 C -0.09 -0.65 9.55 36.00 0.34 -0.30 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.36 7.80 -51.93 -0.41 -0.04 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.46 7.25 -51.93 -0.38 0.09 16 33 H 0.39 5.46 7.45 -40.82 -0.30 5.16 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 3.00 5.87 -51.93 -0.30 2.69 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 45 H 0.07 0.38 6.86 -51.93 -0.36 0.03 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -31.29 375.85 -10.52 -41.80 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.14 Total: 3.10 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.50 Total: -3.65 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.23 Total: -53.06 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.38 Total: -0.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.29 -10.52 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089026742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.786 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds