Wall clock time and date at job start Tue Mar 31 2020 13:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46893 * 2 1 4 4 S 1.70615 * 124.51965 * 270.02092 * 3 2 1 5 5 C 1.75834 * 91.56285 * 179.97438 * 4 3 2 6 6 C 1.46579 * 125.45777 * 180.02562 * 5 4 3 7 7 O 1.21703 * 119.99810 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00170 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27960 * 8 6 5 10 10 H 1.09001 * 110.64080 * 325.42452 * 9 8 6 11 11 C 1.55161 * 110.72417 * 88.56363 * 9 8 6 12 12 C 1.54907 * 101.58168 * 153.86445 * 11 9 8 13 13 N 1.47423 * 104.83090 * 322.99102 * 12 11 9 14 14 C 1.36946 * 125.64687 * 204.16524 * 13 12 11 15 15 H 1.07994 * 119.99965 * 179.97438 * 14 13 12 16 16 C 1.38814 * 120.00011 * 359.97438 * 14 13 12 17 17 N 1.31617 * 119.99930 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47094 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47117 * 120.00103 * 18 16 14 21 21 H 1.48497 * 109.47690 * 239.99987 * 18 16 14 22 22 C 1.47312 * 108.74100 * 24.28565 * 13 12 11 23 23 H 1.09002 * 109.85727 * 239.38914 * 22 13 12 24 24 C 1.53005 * 110.06518 * 118.12428 * 22 13 12 25 25 C 1.36645 * 109.07975 * 0.26517 * 5 4 3 26 26 C 1.33809 * 124.52201 * 90.00703 * 3 2 1 27 27 C 1.50696 * 122.45335 * 359.97438 * 26 3 2 28 28 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47364 * 299.99737 * 1 2 3 30 30 H 1.09002 * 109.47415 * 60.00086 * 1 2 3 31 31 H 1.08996 * 109.46885 * 239.99927 * 2 1 3 32 32 H 1.08997 * 109.46980 * 119.99750 * 2 1 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 34 34 H 1.08995 * 111.00154 * 271.93830 * 11 9 8 35 35 H 1.09003 * 110.99787 * 35.78963 * 11 9 8 36 36 H 1.08998 * 110.36729 * 81.82977 * 12 11 9 37 37 H 1.09004 * 110.36300 * 204.15699 * 12 11 9 38 38 H 0.96998 * 119.99965 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.46947 * 302.27388 * 24 22 13 40 40 H 1.08999 * 109.46515 * 62.27184 * 24 22 13 41 41 H 1.09002 * 109.47096 * 182.26876 * 24 22 13 42 42 H 1.07999 * 123.35184 * 179.73964 * 25 5 4 43 43 H 1.09006 * 109.46971 * 90.00638 * 27 26 3 44 44 H 1.08992 * 109.47736 * 210.00303 * 27 26 3 45 45 H 1.09004 * 109.47337 * 330.00930 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3541 2.3326 -1.4057 5 6 2.8454 3.7238 -0.4492 6 6 3.2986 5.0092 -0.9884 7 8 3.6167 5.9082 -0.2322 8 7 3.3632 5.1956 -2.3217 9 6 3.8220 6.4783 -2.8606 10 1 3.5029 7.3004 -2.2200 11 6 5.3642 6.4821 -3.0311 12 6 5.5491 7.5202 -4.1658 13 7 4.4044 7.3005 -5.0685 14 6 4.3637 7.6230 -6.3988 15 1 3.4741 7.4203 -6.9766 16 6 5.4659 8.2105 -7.0046 17 7 6.5502 8.4571 -6.3006 18 14 5.4106 8.6497 -8.8193 19 1 4.0881 8.2726 -9.3798 20 1 5.6177 10.1113 -8.9814 21 1 6.4816 7.9152 -9.5394 22 6 3.3102 6.6792 -4.3026 23 1 3.0515 5.7156 -4.7417 24 6 2.0861 7.5972 -4.2971 25 6 2.7420 3.4127 0.8774 26 6 2.2852 2.1358 1.1025 27 6 2.0883 1.5802 2.4894 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.1100 4.4790 -2.9244 34 1 5.8575 6.8110 -2.1165 35 1 5.7258 5.5003 -3.3369 36 1 5.5248 8.5323 -3.7618 37 1 6.4869 7.3435 -4.6925 38 1 7.3205 8.8673 -6.7240 39 1 2.3590 8.5640 -3.8744 40 1 1.7304 7.7343 -5.3182 41 1 1.2970 7.1469 -3.6948 42 1 2.9913 4.1025 1.6701 43 1 3.0098 1.1034 2.8239 44 1 1.8297 2.3897 3.1718 45 1 1.2833 0.8454 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089026742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:08 Heat of formation + Delta-G solvation = -11.755806 kcal Electronic energy + Delta-G solvation = -24724.666083 eV Core-core repulsion = 21254.107501 eV Total energy + Delta-G solvation = -3470.558582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14052 -39.74195 -38.94806 -35.67303 -34.72947 -33.87540 -32.10990 -31.41741 -30.41664 -28.40586 -26.95528 -25.91720 -25.03878 -23.29621 -22.25079 -21.73051 -21.38995 -19.62314 -19.02877 -18.65547 -17.52799 -17.21237 -16.65874 -16.14039 -15.89293 -15.73723 -15.35853 -15.19501 -15.02951 -14.61754 -14.39196 -14.06360 -13.99698 -13.77225 -13.43683 -13.27339 -13.13265 -13.01025 -12.95712 -12.77171 -12.65663 -12.61169 -12.28566 -12.22728 -12.11792 -12.04132 -11.94781 -11.63822 -11.60117 -11.48645 -11.19539 -10.74873 -10.19946 -9.64558 -9.33100 -8.91577 -7.75181 -5.20515 -0.52724 0.45210 0.90407 1.31983 1.48642 1.49437 1.59493 1.97683 2.11398 2.51753 3.35568 3.50223 3.70908 3.78916 3.81341 3.91295 4.10572 4.15662 4.21232 4.41616 4.46180 4.46865 4.51960 4.58307 4.61617 4.76714 4.83099 4.86268 4.87730 4.93926 5.00430 5.03106 5.07193 5.07426 5.14377 5.30458 5.32490 5.42960 5.49139 5.53838 5.56029 5.58194 5.78486 6.29236 6.37912 7.04373 7.10480 7.77353 8.41227 9.27149 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.002685 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.497318 B =10424.251302 C =10944.048960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.186 4.186 4 S 0.224 5.776 5 C -0.297 4.297 6 C 0.590 3.410 7 O -0.573 6.573 8 N -0.702 5.702 9 C 0.152 3.848 10 H 0.083 0.917 11 C -0.139 4.139 12 C 0.159 3.841 13 N -0.613 5.613 14 C -0.225 4.225 15 H 0.086 0.914 16 C -0.070 4.070 17 N -0.951 5.951 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.297 1.297 21 H -0.293 1.293 22 C 0.151 3.849 23 H 0.052 0.948 24 C -0.147 4.147 25 C -0.050 4.050 26 C -0.133 4.133 27 C -0.091 4.091 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.407 0.593 34 H 0.066 0.934 35 H 0.069 0.931 36 H -0.013 1.013 37 H 0.079 0.921 38 H 0.246 0.754 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.146 0.854 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.757 -20.467 14.814 28.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.306 4.306 4 S 0.494 5.506 5 C -0.417 4.417 6 C 0.378 3.622 7 O -0.455 6.455 8 N -0.352 5.352 9 C 0.046 3.954 10 H 0.101 0.899 11 C -0.179 4.179 12 C 0.034 3.966 13 N -0.339 5.339 14 C -0.354 4.354 15 H 0.104 0.896 16 C -0.262 4.262 17 N -0.602 5.602 18 Si 0.808 3.192 19 H -0.188 1.188 20 H -0.224 1.224 21 H -0.220 1.220 22 C 0.044 3.956 23 H 0.069 0.931 24 C -0.206 4.206 25 C -0.084 4.084 26 C -0.145 4.145 27 C -0.150 4.150 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.243 0.757 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.005 0.995 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.163 0.837 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.534 -20.029 13.552 27.238 hybrid contribution 0.534 1.058 0.295 1.222 sum -11.999 -18.970 13.847 26.374 Atomic orbital electron populations 1.21799 0.93357 1.03129 1.02266 1.20300 0.96831 0.87642 1.04768 1.24502 1.06340 1.03069 0.96644 1.82886 1.59458 1.00900 1.07358 1.24338 1.18818 0.99414 0.99123 1.17302 0.76682 0.86213 0.82015 1.90792 1.51399 1.44426 1.58847 1.45745 1.67118 1.16187 1.06194 1.21810 0.94034 0.85394 0.94126 0.89863 1.23217 0.95482 1.00355 0.98848 1.21662 0.93695 0.92708 0.88576 1.44803 1.11594 1.71613 1.05866 1.19440 0.99278 1.32353 0.84341 0.89577 1.25624 0.96227 1.01936 1.02391 1.70046 1.04816 1.49774 1.35519 0.84986 0.77693 0.76783 0.79723 1.18838 1.22399 1.21970 1.21235 0.89099 0.95979 0.89273 0.93076 1.22117 0.97614 0.99430 1.01421 1.20794 0.96154 0.96672 0.94775 1.18852 1.04361 0.93145 0.98136 1.20573 1.03088 1.01463 0.89882 0.90205 0.92289 0.93041 0.89713 0.88128 0.75674 0.91536 0.91260 0.99514 0.90274 0.94428 0.94357 0.93039 0.91206 0.83673 0.90379 0.91106 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.06 -0.54 5.72 29.85 0.17 -0.37 16 3 C -0.19 -2.91 5.53 24.68 0.14 -2.77 16 4 S 0.22 4.14 22.10 -56.49 -1.25 2.89 16 5 C -0.30 -7.65 6.45 24.07 0.16 -7.49 16 6 C 0.59 19.22 7.78 86.42 0.67 19.90 16 7 O -0.57 -22.96 16.53 -4.36 -0.07 -23.03 16 8 N -0.70 -21.77 5.19 -440.95 -2.29 -24.06 16 9 C 0.15 5.69 2.79 46.18 0.13 5.82 16 10 H 0.08 3.37 7.33 -2.39 -0.02 3.35 16 11 C -0.14 -5.76 6.77 31.99 0.22 -5.54 16 12 C 0.16 8.11 5.89 86.85 0.51 8.62 16 13 N -0.61 -31.03 3.14 -667.56 -2.10 -33.12 16 14 C -0.23 -12.28 9.91 84.03 0.83 -11.45 16 15 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 16 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 17 N -0.95 -56.91 10.09 21.65 0.22 -56.69 16 18 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 C 0.15 6.03 3.49 45.29 0.16 6.19 16 23 H 0.05 1.92 7.70 -2.39 -0.02 1.90 16 24 C -0.15 -5.34 9.15 71.98 0.66 -4.69 16 25 C -0.05 -1.15 9.80 21.72 0.21 -0.93 16 26 C -0.13 -2.31 5.78 -21.05 -0.12 -2.43 16 27 C -0.09 -1.02 9.55 71.23 0.68 -0.34 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.52 7.80 -2.38 -0.02 0.50 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.69 7.25 -2.39 -0.02 0.67 16 33 H 0.41 10.62 7.45 -92.71 -0.69 9.93 16 34 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.08 4.55 5.87 -2.39 -0.01 4.53 16 38 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.08 0.75 8.14 -2.38 -0.02 0.74 16 44 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 45 H 0.08 0.66 6.86 -2.38 -0.02 0.64 16 Total: -1.00 -69.19 375.85 2.43 -66.76 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.30 Total: 19.28 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.59 Total: 0.55 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -4.16 Total: -113.87 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.07 Total: -23.03 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.25 Total: 2.89 kcal Total: -69.19 2.43 -66.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089026742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.000 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds