Wall clock time and date at job start Tue Mar 31 2020 13:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47673 * 2 1 4 4 C 1.37474 * 122.44632 * 264.97737 * 3 2 1 5 5 C 1.36650 * 113.29805 * 180.02562 * 4 3 2 6 6 C 1.46579 * 125.46198 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99810 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00170 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27960 * 8 6 5 10 10 H 1.09001 * 110.64080 * 325.42452 * 9 8 6 11 11 C 1.55161 * 110.72417 * 88.56363 * 9 8 6 12 12 C 1.54907 * 101.58168 * 153.86445 * 11 9 8 13 13 N 1.47423 * 104.83090 * 322.99102 * 12 11 9 14 14 C 1.36946 * 125.64687 * 204.16524 * 13 12 11 15 15 H 1.07994 * 119.99965 * 179.97438 * 14 13 12 16 16 C 1.38814 * 120.00011 * 359.97438 * 14 13 12 17 17 N 1.31617 * 119.99930 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47009 * 90.00044 * 18 16 14 20 20 H 1.48497 * 109.47270 * 209.99997 * 18 16 14 21 21 H 1.48496 * 109.47465 * 330.00694 * 18 16 14 22 22 C 1.47312 * 108.74100 * 24.28565 * 13 12 11 23 23 H 1.09002 * 109.85727 * 239.38914 * 22 13 12 24 24 C 1.53005 * 110.06518 * 118.12428 * 22 13 12 25 25 S 1.75832 * 109.07922 * 0.23008 * 5 4 3 26 26 C 1.33818 * 122.45248 * 84.99501 * 3 2 1 27 27 C 1.50693 * 124.52044 * 359.97438 * 26 3 2 28 28 H 1.08994 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46782 * 300.00244 * 1 2 3 30 30 H 1.08995 * 109.46917 * 59.99801 * 1 2 3 31 31 H 1.09005 * 109.47233 * 239.99576 * 2 1 3 32 32 H 1.09007 * 109.47232 * 119.99927 * 2 1 3 33 33 H 1.08000 * 123.35289 * 359.97438 * 4 3 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 35 35 H 1.08995 * 111.00154 * 271.93830 * 11 9 8 36 36 H 1.09003 * 110.99787 * 35.78963 * 11 9 8 37 37 H 1.08998 * 110.36729 * 81.82977 * 12 11 9 38 38 H 1.09004 * 110.36300 * 204.15699 * 12 11 9 39 39 H 0.96998 * 119.99965 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.46947 * 302.27388 * 24 22 13 41 41 H 1.08999 * 109.46515 * 62.27184 * 24 22 13 42 42 H 1.09002 * 109.47096 * 182.26876 * 24 22 13 43 43 H 1.08999 * 109.47508 * 89.99563 * 27 26 3 44 44 H 1.09001 * 109.47366 * 209.99994 * 27 26 3 45 45 H 1.09004 * 109.47487 * 329.99706 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3742 2.0822 -1.1557 5 6 2.8066 3.3603 -0.9392 6 6 3.2366 4.3001 -1.9786 7 8 3.2254 3.9614 -3.1475 8 7 3.6443 5.5392 -1.6399 9 6 4.0682 6.4805 -2.6794 10 1 4.5703 5.9552 -3.4919 11 6 2.8572 7.2896 -3.2144 12 6 3.5444 8.5860 -3.7112 13 7 4.6156 8.8444 -2.7319 14 6 5.1776 10.0648 -2.4671 15 1 5.9599 10.1500 -1.7276 16 6 4.7417 11.1924 -3.1494 17 7 3.7878 11.0886 -4.0504 18 14 5.5077 12.8572 -2.7878 19 1 6.6732 13.0707 -3.6831 20 1 4.5028 13.9255 -3.0201 21 1 5.9565 12.8988 -1.3729 22 6 4.9840 7.5723 -2.0868 23 1 4.8269 7.6438 -1.0105 24 6 6.4481 7.2393 -2.3808 25 16 2.7715 3.6943 0.7867 26 6 2.1790 2.1306 1.1249 27 6 1.8679 1.6154 2.5064 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.3082 1.6359 -2.1369 34 1 3.6529 5.8092 -0.7083 35 1 2.3701 6.7658 -4.0369 36 1 2.1476 7.5049 -2.4155 37 1 3.9669 8.4348 -4.7045 38 1 2.8332 9.4120 -3.7222 39 1 3.4830 11.8765 -4.5269 40 1 6.5998 7.1890 -3.4590 41 1 7.0886 8.0142 -1.9595 42 1 6.6990 6.2776 -1.9333 43 1 2.7578 1.1494 2.9294 44 1 1.5550 2.4442 3.1414 45 1 1.0656 0.8797 2.4478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089028079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:43 Heat of formation + Delta-G solvation = 6.302743 kcal Electronic energy + Delta-G solvation = -24729.177080 eV Core-core repulsion = 21259.401576 eV Total energy + Delta-G solvation = -3469.775504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.84361 -38.81778 -37.42982 -34.03870 -33.15088 -32.06159 -31.73550 -30.37616 -28.83732 -27.29712 -24.90223 -24.20496 -23.99609 -22.93758 -20.64112 -20.19733 -19.76017 -18.65770 -17.95667 -16.77702 -16.38672 -15.86295 -15.08877 -14.86426 -14.61386 -14.43142 -14.31261 -13.94492 -13.75381 -13.43936 -13.35590 -12.99258 -12.80062 -12.65468 -12.31971 -12.13871 -12.07887 -11.78691 -11.67006 -11.57743 -11.28160 -11.14035 -10.89127 -10.86887 -10.83130 -10.55728 -10.43533 -10.09615 -9.85107 -9.75246 -9.56291 -8.86536 -8.69535 -8.64812 -8.51820 -6.88172 -5.65672 -3.08643 0.38007 1.29731 1.71446 2.19917 3.27334 3.30135 3.39556 3.44708 3.46452 4.47390 4.47981 4.62160 4.75521 4.92096 4.96047 5.05955 5.16657 5.28382 5.31705 5.36309 5.41816 5.50722 5.53402 5.59052 5.62393 5.63458 5.78863 5.82685 5.92772 6.11166 6.13914 6.23645 6.26013 6.30203 6.34271 6.52844 6.59720 6.71788 6.85551 7.09401 7.51485 7.61870 7.65855 7.84929 8.30541 8.35536 9.20190 9.80794 10.44831 11.37683 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.002626 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.282632 B =10659.975207 C =10998.925543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.120 4.120 4 C -0.051 4.051 5 C -0.258 4.258 6 C 0.588 3.412 7 O -0.532 6.532 8 N -0.710 5.710 9 C 0.135 3.865 10 H 0.095 0.905 11 C -0.153 4.153 12 C 0.153 3.847 13 N -0.595 5.595 14 C -0.220 4.220 15 H 0.078 0.922 16 C -0.011 4.011 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.155 3.845 23 H 0.036 0.964 24 C -0.155 4.155 25 S 0.198 5.802 26 C -0.200 4.200 27 C -0.085 4.085 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.394 0.606 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.015 0.985 38 H 0.110 0.890 39 H 0.252 0.748 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -21.120 12.516 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 C -0.132 4.132 4 C -0.084 4.084 5 C -0.378 4.378 6 C 0.374 3.626 7 O -0.410 6.410 8 N -0.360 5.360 9 C 0.031 3.969 10 H 0.113 0.887 11 C -0.193 4.193 12 C 0.028 3.972 13 N -0.320 5.320 14 C -0.348 4.348 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.569 5.569 18 Si 0.745 3.255 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.047 3.953 23 H 0.054 0.946 24 C -0.215 4.215 25 S 0.467 5.533 26 C -0.320 4.320 27 C -0.144 4.144 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.169 0.831 34 H 0.229 0.771 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.033 0.967 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.625 -19.796 12.507 23.869 hybrid contribution 0.120 -0.248 -0.315 0.419 sum -4.506 -20.044 12.192 23.890 Atomic orbital electron populations 1.21757 0.94790 1.01630 1.02366 1.20234 0.95978 0.91169 1.02839 1.18634 1.04818 0.98436 0.91350 1.20593 0.96171 0.91877 0.99756 1.24610 1.15857 1.00339 0.97030 1.16916 0.77378 0.81108 0.87244 1.90821 1.54576 1.77273 1.18368 1.45967 1.66421 1.12846 1.10786 1.22214 0.96411 0.88648 0.89596 0.88702 1.23414 0.96839 0.98682 1.00360 1.21953 0.91284 0.93588 0.90332 1.44564 1.41756 1.01414 1.44308 1.19026 1.15033 0.82968 1.17804 0.90448 1.24789 0.99142 0.98012 0.98669 1.69793 1.30897 1.27976 1.28255 0.86077 0.78142 0.83602 0.77680 1.21648 1.21676 1.20728 1.21046 0.92067 0.86574 0.95662 0.94626 1.22233 0.98360 0.99334 1.01548 1.83050 1.60213 1.11005 0.99025 1.23996 1.08101 0.99571 1.00316 1.20396 1.02482 1.01478 0.89999 0.92372 0.92622 0.92350 0.90837 0.91032 0.83104 0.77121 0.91864 0.91959 0.96708 0.87255 0.93682 0.92833 0.92638 0.94281 0.90529 0.91118 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.83 37.16 0.37 -0.62 16 2 C -0.06 -0.46 5.54 -27.88 -0.15 -0.61 16 3 C -0.12 -1.17 5.04 -106.45 -0.54 -1.70 16 4 C -0.05 -0.61 9.78 -40.43 -0.40 -1.01 16 5 C -0.26 -3.42 6.45 -36.79 -0.24 -3.66 16 6 C 0.59 9.63 7.78 -12.90 -0.10 9.53 16 7 O -0.53 -10.46 16.53 5.19 0.09 -10.38 16 8 N -0.71 -11.30 5.19 -53.36 -0.28 -11.57 16 9 C 0.14 2.55 2.79 -66.09 -0.18 2.36 16 10 H 0.09 1.90 7.33 -51.93 -0.38 1.52 16 11 C -0.15 -3.11 6.77 -24.58 -0.17 -3.28 16 12 C 0.15 3.77 5.89 -2.53 -0.01 3.75 16 13 N -0.60 -14.88 3.14 -162.35 -0.51 -15.39 16 14 C -0.22 -5.98 9.91 -15.05 -0.15 -6.13 16 15 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 16 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 17 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 18 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.15 3.14 3.49 -66.79 -0.23 2.91 16 23 H 0.04 0.71 7.70 -51.93 -0.40 0.31 16 24 C -0.16 -2.91 9.15 37.16 0.34 -2.57 16 25 S 0.20 2.02 22.10 -107.50 -2.38 -0.35 16 26 C -0.20 -1.83 6.28 -35.86 -0.23 -2.06 16 27 C -0.09 -0.53 9.71 36.00 0.35 -0.18 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.36 7.24 -51.93 -0.38 -0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.07 0.43 7.46 -51.93 -0.39 0.05 16 33 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.39 5.45 7.45 -40.82 -0.30 5.15 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 3.00 5.87 -51.93 -0.30 2.69 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.41 6.39 -51.93 -0.33 0.08 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -31.28 374.89 -10.43 -41.70 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.10 Total: 3.24 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.44 Total: -3.65 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.23 Total: -53.07 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.38 Total: -0.35 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.28 -10.43 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089028079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.006 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds