Wall clock time and date at job start Tue Mar 31 2020 13:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47673 * 2 1 4 4 C 1.37474 * 122.44632 * 264.97737 * 3 2 1 5 5 C 1.36650 * 113.29805 * 180.02562 * 4 3 2 6 6 C 1.46579 * 125.46198 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99810 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00170 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27960 * 8 6 5 10 10 H 1.09001 * 110.64080 * 325.42452 * 9 8 6 11 11 C 1.55161 * 110.72417 * 88.56363 * 9 8 6 12 12 C 1.54907 * 101.58168 * 153.86445 * 11 9 8 13 13 N 1.47423 * 104.83090 * 322.99102 * 12 11 9 14 14 C 1.36946 * 125.64687 * 204.16524 * 13 12 11 15 15 H 1.07994 * 119.99965 * 179.97438 * 14 13 12 16 16 C 1.38814 * 120.00011 * 359.97438 * 14 13 12 17 17 N 1.31617 * 119.99930 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47009 * 90.00044 * 18 16 14 20 20 H 1.48497 * 109.47270 * 209.99997 * 18 16 14 21 21 H 1.48496 * 109.47465 * 330.00694 * 18 16 14 22 22 C 1.47312 * 108.74100 * 24.28565 * 13 12 11 23 23 H 1.09002 * 109.85727 * 239.38914 * 22 13 12 24 24 C 1.53005 * 110.06518 * 118.12428 * 22 13 12 25 25 S 1.75832 * 109.07922 * 0.23008 * 5 4 3 26 26 C 1.33818 * 122.45248 * 84.99501 * 3 2 1 27 27 C 1.50693 * 124.52044 * 359.97438 * 26 3 2 28 28 H 1.08994 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46782 * 300.00244 * 1 2 3 30 30 H 1.08995 * 109.46917 * 59.99801 * 1 2 3 31 31 H 1.09005 * 109.47233 * 239.99576 * 2 1 3 32 32 H 1.09007 * 109.47232 * 119.99927 * 2 1 3 33 33 H 1.08000 * 123.35289 * 359.97438 * 4 3 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 35 35 H 1.08995 * 111.00154 * 271.93830 * 11 9 8 36 36 H 1.09003 * 110.99787 * 35.78963 * 11 9 8 37 37 H 1.08998 * 110.36729 * 81.82977 * 12 11 9 38 38 H 1.09004 * 110.36300 * 204.15699 * 12 11 9 39 39 H 0.96998 * 119.99965 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.46947 * 302.27388 * 24 22 13 41 41 H 1.08999 * 109.46515 * 62.27184 * 24 22 13 42 42 H 1.09002 * 109.47096 * 182.26876 * 24 22 13 43 43 H 1.08999 * 109.47508 * 89.99563 * 27 26 3 44 44 H 1.09001 * 109.47366 * 209.99994 * 27 26 3 45 45 H 1.09004 * 109.47487 * 329.99706 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3742 2.0822 -1.1557 5 6 2.8066 3.3603 -0.9392 6 6 3.2366 4.3001 -1.9786 7 8 3.2254 3.9614 -3.1475 8 7 3.6443 5.5392 -1.6399 9 6 4.0682 6.4805 -2.6794 10 1 4.5703 5.9552 -3.4919 11 6 2.8572 7.2896 -3.2144 12 6 3.5444 8.5860 -3.7112 13 7 4.6156 8.8444 -2.7319 14 6 5.1776 10.0648 -2.4671 15 1 5.9599 10.1500 -1.7276 16 6 4.7417 11.1924 -3.1494 17 7 3.7878 11.0886 -4.0504 18 14 5.5077 12.8572 -2.7878 19 1 6.6732 13.0707 -3.6831 20 1 4.5028 13.9255 -3.0201 21 1 5.9565 12.8988 -1.3729 22 6 4.9840 7.5723 -2.0868 23 1 4.8269 7.6438 -1.0105 24 6 6.4481 7.2393 -2.3808 25 16 2.7715 3.6943 0.7867 26 6 2.1790 2.1306 1.1249 27 6 1.8679 1.6154 2.5064 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.3082 1.6359 -2.1369 34 1 3.6529 5.8092 -0.7083 35 1 2.3701 6.7658 -4.0369 36 1 2.1476 7.5049 -2.4155 37 1 3.9669 8.4348 -4.7045 38 1 2.8332 9.4120 -3.7222 39 1 3.4830 11.8765 -4.5269 40 1 6.5998 7.1890 -3.4590 41 1 7.0886 8.0142 -1.9595 42 1 6.6990 6.2776 -1.9333 43 1 2.7578 1.1494 2.9294 44 1 1.5550 2.4442 3.1414 45 1 1.0656 0.8797 2.4478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089028079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:42 Heat of formation + Delta-G solvation = -11.518785 kcal Electronic energy + Delta-G solvation = -24729.949879 eV Core-core repulsion = 21259.401576 eV Total energy + Delta-G solvation = -3470.548304 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14373 -39.80726 -38.97036 -35.67079 -34.10180 -33.65313 -32.39173 -32.08533 -30.61240 -28.30832 -26.41667 -25.84203 -24.83446 -24.00393 -22.16001 -21.71474 -21.24069 -19.57206 -19.04977 -18.65553 -17.52131 -17.19872 -16.63008 -16.16339 -15.89104 -15.75373 -15.33442 -15.16335 -15.02946 -14.55693 -14.38320 -14.05906 -14.01927 -13.78140 -13.57584 -13.27723 -13.26891 -12.94867 -12.89127 -12.77377 -12.63869 -12.57893 -12.40140 -12.27186 -12.13670 -11.98021 -11.83375 -11.59894 -11.57305 -11.48197 -11.18730 -10.73878 -10.19602 -9.61118 -9.35425 -8.91518 -7.74939 -5.20324 -0.52160 0.45752 0.89543 1.32108 1.48627 1.50329 1.58773 1.98011 2.11811 2.52003 3.35620 3.50368 3.76380 3.80220 3.84736 3.91339 4.08843 4.16876 4.17142 4.40506 4.46268 4.54530 4.58284 4.61449 4.64235 4.72948 4.75216 4.77617 4.88185 4.97261 4.99588 5.00584 5.07293 5.11594 5.17208 5.30604 5.33233 5.46912 5.49065 5.53932 5.55802 5.58128 5.78523 6.29322 6.38409 7.04894 7.10514 7.77531 8.41452 9.27206 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.002626 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.282632 B =10659.975207 C =10998.925543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.133 4.133 4 C -0.047 4.047 5 C -0.299 4.299 6 C 0.590 3.410 7 O -0.574 6.574 8 N -0.702 5.702 9 C 0.152 3.848 10 H 0.083 0.917 11 C -0.139 4.139 12 C 0.159 3.841 13 N -0.613 5.613 14 C -0.227 4.227 15 H 0.086 0.914 16 C -0.069 4.069 17 N -0.952 5.952 18 Si 0.980 3.020 19 H -0.290 1.290 20 H -0.296 1.296 21 H -0.266 1.266 22 C 0.151 3.849 23 H 0.052 0.948 24 C -0.147 4.147 25 S 0.225 5.775 26 C -0.185 4.185 27 C -0.089 4.089 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.069 0.931 37 H -0.013 1.013 38 H 0.079 0.921 39 H 0.246 0.754 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -22.904 15.723 28.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.081 4.081 5 C -0.419 4.419 6 C 0.378 3.622 7 O -0.455 6.455 8 N -0.352 5.352 9 C 0.046 3.954 10 H 0.101 0.899 11 C -0.179 4.179 12 C 0.034 3.966 13 N -0.339 5.339 14 C -0.356 4.356 15 H 0.104 0.896 16 C -0.262 4.262 17 N -0.602 5.602 18 Si 0.808 3.192 19 H -0.217 1.217 20 H -0.223 1.223 21 H -0.191 1.191 22 C 0.044 3.956 23 H 0.069 0.931 24 C -0.206 4.206 25 S 0.495 5.505 26 C -0.305 4.305 27 C -0.147 4.147 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.161 0.839 34 H 0.243 0.757 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.005 0.995 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.439 -21.607 15.771 27.116 hybrid contribution 0.039 0.189 -1.229 1.244 sum -4.400 -21.418 14.541 26.259 Atomic orbital electron populations 1.21749 0.94338 1.02484 1.01814 1.20298 0.96276 0.89642 1.03815 1.18812 1.05304 0.99740 0.90603 1.20767 0.95246 0.91656 1.00460 1.24318 1.18894 1.00385 0.98282 1.17305 0.76291 0.81176 0.87433 1.90791 1.56359 1.78024 1.20362 1.45742 1.66397 1.12403 1.10699 1.21806 0.95070 0.88496 0.89986 0.89892 1.23217 0.97259 0.96825 1.00607 1.21660 0.90898 0.94532 0.89528 1.44794 1.41976 1.02590 1.44501 1.19406 1.14775 0.83926 1.17443 0.89578 1.25627 1.00012 1.01504 0.99018 1.70039 1.32381 1.28319 1.29416 0.85053 0.76875 0.79175 0.78071 1.21728 1.22272 1.19101 1.21236 0.93274 0.85036 0.96042 0.93053 1.22118 0.96899 1.00833 1.00738 1.82894 1.59799 1.11667 0.96152 1.24492 1.05643 0.98670 1.01683 1.20585 1.03753 1.02305 0.88050 0.90851 0.92205 0.93865 0.90808 0.89163 0.83916 0.75659 0.91566 0.91252 0.99545 0.90279 0.94419 0.94388 0.93019 0.91194 0.88910 0.90072 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.83 71.98 0.71 -0.89 16 2 C -0.06 -0.73 5.54 29.85 0.17 -0.56 16 3 C -0.13 -2.31 5.04 -21.05 -0.11 -2.41 16 4 C -0.05 -1.09 9.78 21.72 0.21 -0.88 16 5 C -0.30 -7.69 6.45 24.08 0.16 -7.53 16 6 C 0.59 19.25 7.78 86.42 0.67 19.92 16 7 O -0.57 -23.06 16.53 -4.36 -0.07 -23.14 16 8 N -0.70 -21.76 5.19 -440.95 -2.29 -24.05 16 9 C 0.15 5.69 2.79 46.18 0.13 5.82 16 10 H 0.08 3.36 7.33 -2.39 -0.02 3.34 16 11 C -0.14 -5.77 6.77 31.99 0.22 -5.55 16 12 C 0.16 8.13 5.89 86.85 0.51 8.65 16 13 N -0.61 -31.04 3.14 -667.56 -2.10 -33.14 16 14 C -0.23 -12.37 9.91 84.03 0.83 -11.54 16 15 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 16 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 17 N -0.95 -56.95 10.09 21.65 0.22 -56.73 16 18 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.15 6.03 3.49 45.29 0.16 6.19 16 23 H 0.05 1.93 7.70 -2.39 -0.02 1.91 16 24 C -0.15 -5.35 9.15 71.98 0.66 -4.69 16 25 S 0.23 4.09 22.10 -56.49 -1.25 2.85 16 26 C -0.18 -2.82 6.28 24.68 0.15 -2.67 16 27 C -0.09 -0.73 9.71 71.23 0.69 -0.04 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.60 7.24 -2.39 -0.02 0.58 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.88 8.10 -2.38 -0.02 0.86 16 32 H 0.09 0.76 7.46 -2.38 -0.02 0.74 16 33 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 34 H 0.41 10.59 7.45 -92.71 -0.69 9.90 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 37 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 38 H 0.08 4.55 5.87 -2.39 -0.01 4.53 16 39 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.09 0.56 6.39 -2.38 -0.02 0.55 16 Total: -1.00 -69.42 374.89 2.47 -66.95 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.30 Total: 19.47 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.63 Total: 0.38 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -4.16 Total: -113.92 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.07 Total: -23.14 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.25 Total: 2.85 kcal Total: -69.42 2.47 -66.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089028079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.431 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds