Wall clock time and date at job start Tue Mar 31 2020 13:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46575 * 125.46191 * 179.79442 * 7 6 5 9 9 O 1.21705 * 119.99559 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00218 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99890 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47195 * 179.97438 * 11 10 8 13 13 C 1.53773 * 113.61574 * 274.14125 * 12 11 10 14 14 C 1.53950 * 87.01944 * 220.04674 * 13 12 11 15 15 N 1.46504 * 113.53400 * 270.81266 * 14 13 12 16 16 C 1.36940 * 120.00057 * 252.48902 * 15 14 13 17 17 H 1.07999 * 119.99748 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00084 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99823 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00016 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47513 * 89.99900 * 20 18 16 22 22 H 1.48497 * 109.47091 * 210.00238 * 20 18 16 23 23 H 1.48506 * 109.46683 * 329.99823 * 20 18 16 24 24 C 1.53775 * 87.11223 * 25.36259 * 14 13 12 25 25 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 34 34 H 1.08001 * 123.35041 * 180.22518 * 6 5 4 35 35 H 0.97001 * 119.99553 * 359.97438 * 10 8 7 36 36 H 1.08992 * 109.47722 * 300.00375 * 11 10 8 37 37 H 1.09009 * 109.47213 * 60.00187 * 11 10 8 38 38 H 1.09004 * 112.84225 * 45.33869 * 12 11 10 39 39 H 1.09006 * 113.61861 * 334.56616 * 13 12 11 40 40 H 1.09005 * 113.61215 * 105.46673 * 13 12 11 41 41 H 1.08997 * 113.74656 * 139.94507 * 14 13 12 42 42 H 0.97001 * 120.00441 * 72.49392 * 15 14 13 43 43 H 0.97004 * 119.99448 * 180.02562 * 19 18 16 44 44 H 1.09001 * 113.61483 * 220.09347 * 24 14 13 45 45 H 1.08997 * 113.61550 * 89.19114 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4407 0.9904 9 8 8.3057 1.4400 0.2345 10 7 7.5487 1.4402 2.3238 11 6 8.9107 1.4393 2.8632 12 6 8.8538 1.4395 4.3922 13 6 8.7301 2.8449 5.0039 14 6 9.7162 2.3724 6.0876 15 7 9.0622 1.7569 7.2452 16 6 9.0096 2.4270 8.4383 17 1 9.4498 3.4093 8.5258 18 6 8.3905 1.8436 9.5353 19 7 7.8545 0.6462 9.4287 20 14 8.3181 2.7579 11.1626 21 1 7.0818 3.5789 11.2146 22 1 8.3102 1.7799 12.2800 23 1 9.5049 3.6419 11.2868 24 6 10.2363 1.3534 5.0601 25 16 4.5134 1.4419 1.4068 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.8838 1.4322 -2.0957 34 1 6.3957 1.4410 -1.6685 35 1 6.7884 1.4403 2.9262 36 1 9.4374 0.5493 2.5189 37 1 9.4382 2.3292 2.5195 38 1 8.1320 0.7255 4.7888 39 1 9.1274 3.6350 4.3667 40 1 7.7341 3.0686 5.3860 41 1 10.4534 3.1245 6.3683 42 1 8.6666 0.8747 7.1666 43 1 7.4216 0.2388 10.1952 44 1 10.4544 0.3747 5.4876 45 1 11.0462 1.7348 4.4383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091052606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:33 Heat of formation + Delta-G solvation = 5.565882 kcal Electronic energy + Delta-G solvation = -23565.541874 eV Core-core repulsion = 20095.734417 eV Total energy + Delta-G solvation = -3469.807457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88704 -38.68364 -38.05139 -35.23900 -34.67037 -33.22310 -30.87382 -30.12207 -28.11481 -26.45736 -25.07248 -24.14572 -23.62322 -22.00134 -21.84433 -21.30201 -19.52821 -18.48976 -17.94016 -17.29804 -16.49665 -15.87578 -15.48661 -15.31946 -15.12525 -14.84925 -14.28281 -14.16752 -14.04010 -13.68775 -13.48801 -13.31948 -12.98618 -12.86020 -12.64391 -12.28292 -12.15306 -11.93648 -11.83076 -11.60077 -11.41001 -11.25927 -11.06440 -11.00006 -10.85611 -10.50780 -10.27692 -10.17523 -9.86772 -9.70721 -9.50276 -9.14576 -8.90802 -8.85400 -8.80268 -7.01824 -5.82433 -3.11437 0.27787 1.20904 1.63902 2.16087 3.11420 3.13053 3.40626 3.46130 3.47663 4.25067 4.52603 4.54264 4.61431 4.70068 4.89870 5.03969 5.04958 5.06785 5.11279 5.21766 5.26525 5.34032 5.36945 5.43758 5.60130 5.64132 5.64988 5.68355 5.77714 5.83816 5.86004 5.90612 5.95890 6.08808 6.11986 6.20187 6.34899 6.36427 6.57154 6.72993 6.88005 7.02718 7.41461 7.67588 8.09436 8.36802 9.47499 10.04960 10.39198 11.40007 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012726 B = 0.002481 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.627634 B =11283.020390 C =13103.473487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.053 4.053 4 C -0.193 4.193 5 C -0.155 4.155 6 C -0.054 4.054 7 C -0.268 4.268 8 C 0.588 3.412 9 O -0.536 6.536 10 N -0.719 5.719 11 C 0.132 3.868 12 C -0.121 4.121 13 C -0.169 4.169 14 C 0.168 3.832 15 N -0.706 5.706 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.147 4.147 25 S 0.209 5.791 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 0.157 -21.873 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.092 4.092 4 C -0.313 4.313 5 C -0.185 4.185 6 C -0.087 4.087 7 C -0.388 4.388 8 C 0.373 3.627 9 O -0.415 6.415 10 N -0.370 5.370 11 C 0.009 3.991 12 C -0.140 4.140 13 C -0.210 4.210 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.187 4.187 25 S 0.477 5.523 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.169 0.831 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.018 0.262 -20.622 23.383 hybrid contribution -0.409 0.132 -0.503 0.661 sum -11.427 0.395 -21.125 24.021 Atomic orbital electron populations 1.21779 0.95228 1.02050 1.01996 1.21571 0.96046 0.95436 1.02869 1.20271 0.87031 0.98195 1.03670 1.24285 1.01214 1.07884 0.97879 1.19939 0.92558 1.06495 0.99536 1.20729 0.96139 0.96713 0.95163 1.24649 0.97033 1.18977 0.98167 1.16969 0.86718 0.76551 0.82418 1.90816 1.41863 1.50682 1.58165 1.45957 1.10219 1.74795 1.06004 1.21537 0.81851 1.02017 0.93712 1.22728 0.99896 0.99944 0.91406 1.23927 1.02600 0.94440 1.00055 1.21088 0.93086 0.93808 0.86493 1.42175 1.66247 1.19740 1.06255 1.19292 1.30621 0.99668 0.87730 0.90985 1.24764 1.01040 0.96819 0.98273 1.69661 1.42716 1.15219 1.30469 0.86170 0.77747 0.78557 0.83598 1.21683 1.21752 1.20691 1.23435 0.95011 1.01529 0.98679 1.83201 0.94122 1.67657 1.07305 0.92479 0.92606 0.92382 0.91496 0.91543 0.90448 0.89772 0.83958 0.83059 0.76608 0.91521 0.91275 0.88871 0.91352 0.91472 0.91897 0.78114 0.93437 0.91254 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.15 0.37 -0.42 16 2 C -0.12 -0.74 5.92 -26.74 -0.16 -0.89 16 3 C -0.05 -0.33 5.64 -27.88 -0.16 -0.49 16 4 C -0.19 -1.64 5.53 -35.86 -0.20 -1.84 16 5 C -0.15 -1.35 10.00 -41.41 -0.41 -1.76 16 6 C -0.05 -0.58 10.01 -40.43 -0.40 -0.98 16 7 C -0.27 -3.22 6.45 -36.80 -0.24 -3.46 16 8 C 0.59 8.47 7.78 -12.90 -0.10 8.37 16 9 O -0.54 -9.36 16.84 5.18 0.09 -9.27 16 10 N -0.72 -9.55 5.55 -61.65 -0.34 -9.89 16 11 C 0.13 1.81 5.50 -4.04 -0.02 1.79 16 12 C -0.12 -1.81 3.62 -89.81 -0.33 -2.14 16 13 C -0.17 -2.80 7.44 -25.83 -0.19 -2.99 16 14 C 0.17 3.23 4.57 -67.03 -0.31 2.93 16 15 N -0.71 -17.20 5.31 -52.55 -0.28 -17.48 16 16 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 20 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.15 -2.33 7.39 -25.92 -0.19 -2.52 16 25 S 0.21 2.02 22.10 -107.50 -2.38 -0.36 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.40 4.80 7.59 -40.82 -0.31 4.49 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.97 7.87 -51.92 -0.41 0.56 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.38 9.92 7.90 -40.82 -0.32 9.59 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -31.35 388.26 -11.28 -42.63 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.34 Total: 10.00 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.59 Total: -11.61 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.10 Total: -54.26 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.38 Total: -0.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.35 -11.28 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091052606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.198 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds