Wall clock time and date at job start Tue Mar 31 2020 13:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46575 * 125.46191 * 179.79442 * 7 6 5 9 9 O 1.21705 * 119.99559 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00218 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99890 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47195 * 179.97438 * 11 10 8 13 13 C 1.53773 * 113.61574 * 274.14125 * 12 11 10 14 14 C 1.53950 * 87.01944 * 220.04674 * 13 12 11 15 15 N 1.46504 * 113.53400 * 270.81266 * 14 13 12 16 16 C 1.36940 * 120.00057 * 252.48902 * 15 14 13 17 17 H 1.07999 * 119.99748 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00084 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99823 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00016 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47513 * 89.99900 * 20 18 16 22 22 H 1.48497 * 109.47091 * 210.00238 * 20 18 16 23 23 H 1.48506 * 109.46683 * 329.99823 * 20 18 16 24 24 C 1.53775 * 87.11223 * 25.36259 * 14 13 12 25 25 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 34 34 H 1.08001 * 123.35041 * 180.22518 * 6 5 4 35 35 H 0.97001 * 119.99553 * 359.97438 * 10 8 7 36 36 H 1.08992 * 109.47722 * 300.00375 * 11 10 8 37 37 H 1.09009 * 109.47213 * 60.00187 * 11 10 8 38 38 H 1.09004 * 112.84225 * 45.33869 * 12 11 10 39 39 H 1.09006 * 113.61861 * 334.56616 * 13 12 11 40 40 H 1.09005 * 113.61215 * 105.46673 * 13 12 11 41 41 H 1.08997 * 113.74656 * 139.94507 * 14 13 12 42 42 H 0.97001 * 120.00441 * 72.49392 * 15 14 13 43 43 H 0.97004 * 119.99448 * 180.02562 * 19 18 16 44 44 H 1.09001 * 113.61483 * 220.09347 * 24 14 13 45 45 H 1.08997 * 113.61550 * 89.19114 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4407 0.9904 9 8 8.3057 1.4400 0.2345 10 7 7.5487 1.4402 2.3238 11 6 8.9107 1.4393 2.8632 12 6 8.8538 1.4395 4.3922 13 6 8.7301 2.8449 5.0039 14 6 9.7162 2.3724 6.0876 15 7 9.0622 1.7569 7.2452 16 6 9.0096 2.4270 8.4383 17 1 9.4498 3.4093 8.5258 18 6 8.3905 1.8436 9.5353 19 7 7.8545 0.6462 9.4287 20 14 8.3181 2.7579 11.1626 21 1 7.0818 3.5789 11.2146 22 1 8.3102 1.7799 12.2800 23 1 9.5049 3.6419 11.2868 24 6 10.2363 1.3534 5.0601 25 16 4.5134 1.4419 1.4068 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.8838 1.4322 -2.0957 34 1 6.3957 1.4410 -1.6685 35 1 6.7884 1.4403 2.9262 36 1 9.4374 0.5493 2.5189 37 1 9.4382 2.3292 2.5195 38 1 8.1320 0.7255 4.7888 39 1 9.1274 3.6350 4.3667 40 1 7.7341 3.0686 5.3860 41 1 10.4534 3.1245 6.3683 42 1 8.6666 0.8747 7.1666 43 1 7.4216 0.2388 10.1952 44 1 10.4544 0.3747 5.4876 45 1 11.0462 1.7348 4.4383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091052606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:32 Heat of formation + Delta-G solvation = -12.466312 kcal Electronic energy + Delta-G solvation = -23566.323808 eV Core-core repulsion = 20095.734417 eV Total energy + Delta-G solvation = -3470.589391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01624 -39.95458 -38.91044 -36.07700 -35.76961 -34.99318 -32.19791 -31.37775 -29.22417 -27.40299 -26.44703 -25.68735 -24.70914 -23.28285 -22.36189 -22.35143 -20.54465 -19.75264 -19.30080 -18.87881 -17.43820 -16.87288 -16.72165 -16.53995 -16.12471 -15.82411 -15.80241 -15.39682 -14.93008 -14.80020 -14.66671 -14.50472 -14.18330 -13.80055 -13.54467 -13.36512 -13.28232 -12.94529 -12.92193 -12.74547 -12.63586 -12.37402 -12.16572 -12.08657 -12.07883 -11.91676 -11.60415 -11.52780 -11.49227 -11.21757 -10.94175 -10.79814 -10.25650 -9.65821 -9.57391 -8.99782 -7.95040 -5.23268 -0.54221 0.42894 0.88319 1.35719 1.48450 1.49422 1.57957 2.06577 2.12386 2.56073 3.37490 3.63381 3.68281 3.74407 3.76832 3.92133 4.05186 4.13588 4.15110 4.28318 4.31123 4.38055 4.41339 4.60567 4.69711 4.71488 4.72891 4.83864 4.92403 4.95352 4.97817 5.02531 5.09677 5.14299 5.20976 5.22146 5.28309 5.33395 5.41186 5.44461 5.44911 5.53047 5.65073 6.28653 6.34950 7.01266 7.33720 8.10666 8.33093 9.28256 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012726 B = 0.002481 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.627634 B =11283.020390 C =13103.473487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.053 4.053 4 C -0.181 4.181 5 C -0.159 4.159 6 C -0.050 4.050 7 C -0.302 4.302 8 C 0.587 3.413 9 O -0.574 6.574 10 N -0.716 5.716 11 C 0.140 3.860 12 C -0.105 4.105 13 C -0.155 4.155 14 C 0.145 3.855 15 N -0.719 5.719 16 C -0.242 4.242 17 H 0.077 0.923 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.287 1.287 22 H -0.297 1.297 23 H -0.270 1.270 24 C -0.132 4.132 25 S 0.214 5.786 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.059 0.941 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.356 1.098 -23.191 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.092 4.092 4 C -0.301 4.301 5 C -0.189 4.189 6 C -0.084 4.084 7 C -0.422 4.422 8 C 0.375 3.625 9 O -0.456 6.456 10 N -0.366 5.366 11 C 0.017 3.983 12 C -0.124 4.124 13 C -0.195 4.195 14 C 0.035 3.965 15 N -0.358 5.358 16 C -0.374 4.374 17 H 0.095 0.905 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.801 3.199 21 H -0.214 1.214 22 H -0.223 1.223 23 H -0.195 1.195 24 C -0.172 4.172 25 S 0.483 5.517 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.186 0.814 34 H 0.169 0.831 35 H 0.241 0.759 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.921 1.239 -21.958 25.016 hybrid contribution -0.156 -0.134 -0.184 0.276 sum -12.077 1.104 -22.142 25.246 Atomic orbital electron populations 1.21769 0.94392 1.02288 1.02469 1.21555 0.96748 0.95053 1.02445 1.20395 0.85305 0.98639 1.04832 1.24646 1.02293 1.05975 0.97154 1.20142 0.91597 1.06294 1.00839 1.20950 0.97235 0.95523 0.94725 1.24508 0.96720 1.21885 0.99134 1.17269 0.87378 0.75632 0.82250 1.90782 1.43263 1.52691 1.58911 1.45916 1.10266 1.74420 1.06016 1.21401 0.82265 1.02269 0.92405 1.22515 0.99067 0.98544 0.92230 1.23758 1.00727 0.95960 0.99063 1.21411 0.93885 0.95054 0.86183 1.42307 1.66930 1.19431 1.07095 1.19671 1.29183 0.99716 0.88791 0.90548 1.25546 1.01761 0.97823 1.01623 1.69811 1.44304 1.16811 1.31020 0.85159 0.77969 0.77301 0.79450 1.21431 1.22320 1.19477 1.23337 0.96239 1.00033 0.97559 1.83167 0.93267 1.67582 1.07730 0.92450 0.91698 0.92316 0.91402 0.92557 0.89958 0.87938 0.81394 0.83075 0.75924 0.91411 0.90899 0.90120 0.88995 0.93311 0.92032 0.79361 0.94021 0.92231 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.12 -1.22 5.92 30.59 0.18 -1.04 16 3 C -0.05 -0.54 5.64 29.85 0.17 -0.37 16 4 C -0.18 -2.72 5.53 24.68 0.14 -2.58 16 5 C -0.16 -2.44 10.00 21.08 0.21 -2.23 16 6 C -0.05 -1.03 10.01 21.72 0.22 -0.81 16 7 C -0.30 -7.13 6.45 24.07 0.16 -6.98 16 8 C 0.59 16.85 7.78 86.42 0.67 17.52 16 9 O -0.57 -20.13 16.84 -4.36 -0.07 -20.20 16 10 N -0.72 -18.67 5.55 -467.17 -2.59 -21.27 16 11 C 0.14 3.68 5.50 86.38 0.48 4.16 16 12 C -0.10 -3.04 3.62 -10.27 -0.04 -3.08 16 13 C -0.15 -4.94 7.44 31.18 0.23 -4.71 16 14 C 0.14 5.49 4.57 45.57 0.21 5.70 16 15 N -0.72 -35.42 5.31 -320.18 -1.70 -37.12 16 16 C -0.24 -13.22 9.97 84.03 0.84 -12.38 16 17 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 18 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 19 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 20 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 C -0.13 -4.03 7.39 31.12 0.23 -3.80 16 25 S 0.21 3.94 22.10 -56.49 -1.25 2.69 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.41 9.60 7.59 -92.71 -0.70 8.89 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.91 7.87 -2.38 -0.02 1.89 16 38 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.09 2.53 7.92 -2.38 -0.02 2.51 16 40 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16 42 H 0.37 19.74 7.90 -92.71 -0.73 19.00 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.11 2.67 8.10 -2.39 -0.02 2.65 16 Total: -1.00 -67.67 388.26 1.12 -66.55 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: -0.45 Total: 34.84 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.87 Total: -14.93 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -4.01 Total: -116.57 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.07 Total: -20.20 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.25 Total: 2.69 kcal Total: -67.67 1.12 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091052606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.087 kcal (2) G-P(sol) polarization free energy of solvation -67.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds