Wall clock time and date at job start Tue Mar 31 2020 13:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47313 * 2 1 4 4 S 1.70619 * 124.52337 * 270.16345 * 3 2 1 5 5 C 1.75836 * 91.56263 * 180.19529 * 4 3 2 6 6 C 1.46583 * 125.45507 * 179.78887 * 5 4 3 7 7 O 1.21706 * 119.99519 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00530 * 0.02562 * 6 5 4 9 9 C 1.46498 * 120.00343 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47271 * 180.02562 * 9 8 6 11 11 C 1.53779 * 113.61505 * 274.14049 * 10 9 8 12 12 C 1.53955 * 87.01947 * 220.04719 * 11 10 9 13 13 N 1.46498 * 113.53720 * 270.81076 * 12 11 10 14 14 C 1.36934 * 119.99808 * 252.49789 * 13 12 11 15 15 H 1.07998 * 120.00254 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00124 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99899 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00218 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47215 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47150 * 119.99941 * 18 16 14 21 21 H 1.48503 * 109.47177 * 239.99800 * 18 16 14 22 22 C 1.53776 * 113.61616 * 176.52996 * 10 9 8 23 23 C 1.36647 * 109.08357 * 359.80690 * 5 4 3 24 24 C 1.33819 * 124.52402 * 89.99771 * 3 2 1 25 25 C 1.50703 * 122.44836 * 0.02562 * 24 3 2 26 26 H 1.08994 * 109.47142 * 59.99670 * 1 2 3 27 27 H 1.08996 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46750 * 300.00154 * 1 2 3 29 29 H 1.08995 * 109.47088 * 239.99887 * 2 1 3 30 30 H 1.09008 * 109.47092 * 120.00100 * 2 1 3 31 31 H 0.97002 * 119.99791 * 0.02562 * 8 6 5 32 32 H 1.08994 * 109.47042 * 300.00478 * 9 8 6 33 33 H 1.08998 * 109.46889 * 60.00242 * 9 8 6 34 34 H 1.08998 * 112.84631 * 45.32897 * 10 9 8 35 35 H 1.09006 * 113.61145 * 334.56461 * 11 10 9 36 36 H 1.08996 * 113.61766 * 105.46479 * 11 10 9 37 37 H 1.08997 * 113.74174 * 139.94334 * 12 11 10 38 38 H 0.96995 * 119.99946 * 72.49079 * 13 12 11 39 39 H 0.96998 * 120.00323 * 180.02562 * 17 16 14 40 40 H 1.09001 * 113.61676 * 254.53318 * 22 10 9 41 41 H 1.09007 * 113.61494 * 25.43051 * 22 10 9 42 42 H 1.08002 * 123.35104 * 179.97438 * 23 5 4 43 43 H 1.09002 * 109.47152 * 269.73468 * 25 24 3 44 44 H 1.09001 * 109.46980 * 149.73569 * 25 24 3 45 45 H 1.09004 * 109.47113 * 29.73549 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3510 2.3337 -1.4057 5 6 2.8510 3.7218 -0.4491 6 6 3.3107 5.0049 -0.9883 7 8 3.6346 5.9018 -0.2320 8 7 3.3748 5.1916 -2.3215 9 6 3.8348 6.4739 -2.8604 10 6 3.8119 6.4222 -4.3894 11 6 5.0907 5.8298 -5.0049 12 6 4.9781 6.9191 -6.0871 13 7 4.1746 6.5142 -7.2432 14 6 4.7843 6.2388 -8.4380 15 1 5.8574 6.3204 -8.5281 16 6 4.0231 5.8547 -9.5334 17 7 2.7154 5.7547 -9.4235 18 14 4.8548 5.4797 -11.1635 19 1 6.3215 5.6660 -11.0253 20 1 4.5682 4.0759 -11.5540 21 1 4.3357 6.3996 -12.2073 22 6 4.1983 7.7527 -5.0566 23 6 2.7428 3.4124 0.8775 24 6 2.2852 2.1358 1.1025 25 6 2.0891 1.5798 2.4895 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.1163 4.4769 -2.9243 32 1 3.1764 7.2706 -2.5143 33 1 4.8512 6.6681 -2.5182 34 1 2.8946 5.9857 -4.7845 35 1 5.9702 5.9348 -4.3696 36 1 4.9625 4.8175 -5.3880 37 1 5.9351 7.3577 -6.3694 38 1 3.2108 6.4412 -7.1624 39 1 2.1834 5.4860 -10.1888 40 1 3.3507 8.2905 -5.4814 41 1 4.8334 8.3844 -4.4354 42 1 2.9923 4.1021 1.6703 43 1 1.0743 1.7921 2.8259 44 1 2.8024 2.0435 3.1709 45 1 2.2489 0.5016 2.4747 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091356587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:54 Heat of formation + Delta-G solvation = 6.908624 kcal Electronic energy + Delta-G solvation = -23813.735167 eV Core-core repulsion = 20343.985936 eV Total energy + Delta-G solvation = -3469.749231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.93586 -38.91142 -38.27757 -34.68950 -34.10036 -33.21690 -30.84990 -30.12234 -28.11906 -27.25773 -25.08526 -24.73676 -23.59705 -22.67538 -21.68147 -20.77649 -19.05659 -18.44959 -17.93247 -17.32226 -16.57312 -15.87668 -15.50387 -14.99754 -14.83528 -14.66489 -14.53658 -14.14818 -13.92945 -13.69324 -13.43012 -13.28570 -12.93874 -12.91189 -12.54925 -12.41189 -12.31307 -11.98320 -11.91657 -11.67296 -11.44186 -11.40831 -11.06687 -10.99359 -10.87530 -10.50636 -10.27342 -10.14114 -9.86916 -9.71159 -9.50196 -9.12593 -8.91205 -8.84113 -8.61593 -7.01801 -5.82578 -3.11590 0.29511 1.23340 1.65927 2.11310 3.10890 3.12646 3.40200 3.46320 3.48343 4.30271 4.54181 4.60063 4.64044 4.86221 4.87094 5.01413 5.04005 5.06312 5.12357 5.21671 5.26785 5.35717 5.43705 5.45707 5.52511 5.58656 5.60596 5.66301 5.72091 5.80439 5.85559 5.93619 6.05993 6.09220 6.19362 6.20213 6.34965 6.36440 6.57136 6.73025 6.87989 7.02695 7.41662 7.68018 8.09646 8.36600 9.47385 10.04851 10.39087 11.39923 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.002459 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.773715 B =11386.267125 C =12785.036107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.196 4.196 4 S 0.206 5.794 5 C -0.265 4.265 6 C 0.588 3.412 7 O -0.536 6.536 8 N -0.719 5.719 9 C 0.132 3.868 10 C -0.121 4.121 11 C -0.169 4.169 12 C 0.168 3.832 13 N -0.706 5.706 14 C -0.241 4.241 15 H 0.073 0.927 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.147 4.147 23 C -0.050 4.050 24 C -0.123 4.123 25 C -0.092 4.092 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.400 0.600 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.151 0.849 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -10.286 22.842 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.316 4.316 4 S 0.476 5.524 5 C -0.386 4.386 6 C 0.374 3.626 7 O -0.415 6.415 8 N -0.370 5.370 9 C 0.009 3.991 10 C -0.140 4.140 11 C -0.210 4.210 12 C 0.055 3.945 13 N -0.344 5.344 14 C -0.372 4.372 15 H 0.091 0.909 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.187 4.187 23 C -0.084 4.084 24 C -0.136 4.136 25 C -0.151 4.151 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.234 0.766 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.169 0.831 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.857 -9.924 21.566 23.911 hybrid contribution -0.016 -0.377 0.387 0.541 sum -2.873 -10.301 21.953 24.419 Atomic orbital electron populations 1.21784 0.93995 1.02174 1.02658 1.20160 0.96430 0.89394 1.03505 1.24076 1.07991 1.02138 0.97408 1.83167 1.59657 1.02407 1.07183 1.24567 1.16218 0.99636 0.98138 1.16958 0.77715 0.85526 0.82420 1.90815 1.49639 1.42927 1.58140 1.45952 1.67381 1.17631 1.06001 1.21534 0.99776 0.84074 0.93712 1.22729 1.00073 0.99786 0.91406 1.23927 0.95447 1.01607 1.00042 1.21088 0.94483 0.92389 0.86499 1.42181 1.06055 1.79986 1.06211 1.19336 0.92046 1.38189 0.87656 0.90928 1.24767 0.95506 1.02378 0.98283 1.69669 1.03817 1.54179 1.30386 0.86101 0.78446 0.77572 0.83976 1.20491 1.21840 1.21829 1.23437 1.01091 0.95448 0.98677 1.20590 0.96892 0.95685 0.95209 1.18641 1.04458 0.93985 0.96510 1.20508 1.02210 1.00788 0.91576 0.92266 0.91853 0.92224 0.90583 0.89723 0.76605 0.91530 0.91271 0.88867 0.91352 0.91470 0.91897 0.78116 0.93487 0.91253 0.90395 0.83110 0.91246 0.91417 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.90 37.16 0.37 -0.52 16 2 C -0.06 -0.36 6.03 -27.89 -0.17 -0.53 16 3 C -0.20 -1.75 5.53 -35.86 -0.20 -1.95 16 4 S 0.21 2.05 22.10 -107.50 -2.38 -0.32 16 5 C -0.27 -3.26 6.45 -36.79 -0.24 -3.50 16 6 C 0.59 8.57 7.78 -12.90 -0.10 8.47 16 7 O -0.54 -9.42 16.84 5.18 0.09 -9.33 16 8 N -0.72 -9.64 5.55 -61.65 -0.34 -9.98 16 9 C 0.13 1.82 5.50 -4.04 -0.02 1.80 16 10 C -0.12 -1.82 3.62 -89.81 -0.33 -2.15 16 11 C -0.17 -2.81 7.44 -25.83 -0.19 -3.00 16 12 C 0.17 3.24 4.57 -67.03 -0.31 2.94 16 13 N -0.71 -17.24 5.31 -52.55 -0.28 -17.52 16 14 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 18 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 23 C -0.05 -0.56 9.80 -40.44 -0.40 -0.96 16 24 C -0.12 -1.14 5.78 -106.45 -0.62 -1.75 16 25 C -0.09 -0.59 9.85 36.01 0.35 -0.24 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.45 6.57 -51.92 -0.34 0.11 16 31 H 0.40 4.85 7.59 -40.82 -0.31 4.54 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.97 7.88 -51.93 -0.41 0.57 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 38 H 0.38 9.94 7.90 -40.82 -0.32 9.61 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.08 8.10 -51.92 -0.42 0.66 16 42 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 45 H 0.07 0.36 6.53 -51.93 -0.34 0.02 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -31.59 385.01 -10.85 -42.44 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.17 Total: 9.90 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.28 Total: -11.12 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.10 Total: -54.42 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.38 Total: -0.32 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.59 -10.85 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091356587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.348 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds