Wall clock time and date at job start Tue Mar 31 2020 13:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47313 * 2 1 4 4 S 1.70619 * 124.52337 * 270.16345 * 3 2 1 5 5 C 1.75836 * 91.56263 * 180.19529 * 4 3 2 6 6 C 1.46583 * 125.45507 * 179.78887 * 5 4 3 7 7 O 1.21706 * 119.99519 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00530 * 0.02562 * 6 5 4 9 9 C 1.46498 * 120.00343 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47271 * 180.02562 * 9 8 6 11 11 C 1.53779 * 113.61505 * 274.14049 * 10 9 8 12 12 C 1.53955 * 87.01947 * 220.04719 * 11 10 9 13 13 N 1.46498 * 113.53720 * 270.81076 * 12 11 10 14 14 C 1.36934 * 119.99808 * 252.49789 * 13 12 11 15 15 H 1.07998 * 120.00254 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00124 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99899 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00218 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47215 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47150 * 119.99941 * 18 16 14 21 21 H 1.48503 * 109.47177 * 239.99800 * 18 16 14 22 22 C 1.53776 * 113.61616 * 176.52996 * 10 9 8 23 23 C 1.36647 * 109.08357 * 359.80690 * 5 4 3 24 24 C 1.33819 * 124.52402 * 89.99771 * 3 2 1 25 25 C 1.50703 * 122.44836 * 0.02562 * 24 3 2 26 26 H 1.08994 * 109.47142 * 59.99670 * 1 2 3 27 27 H 1.08996 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46750 * 300.00154 * 1 2 3 29 29 H 1.08995 * 109.47088 * 239.99887 * 2 1 3 30 30 H 1.09008 * 109.47092 * 120.00100 * 2 1 3 31 31 H 0.97002 * 119.99791 * 0.02562 * 8 6 5 32 32 H 1.08994 * 109.47042 * 300.00478 * 9 8 6 33 33 H 1.08998 * 109.46889 * 60.00242 * 9 8 6 34 34 H 1.08998 * 112.84631 * 45.32897 * 10 9 8 35 35 H 1.09006 * 113.61145 * 334.56461 * 11 10 9 36 36 H 1.08996 * 113.61766 * 105.46479 * 11 10 9 37 37 H 1.08997 * 113.74174 * 139.94334 * 12 11 10 38 38 H 0.96995 * 119.99946 * 72.49079 * 13 12 11 39 39 H 0.96998 * 120.00323 * 180.02562 * 17 16 14 40 40 H 1.09001 * 113.61676 * 254.53318 * 22 10 9 41 41 H 1.09007 * 113.61494 * 25.43051 * 22 10 9 42 42 H 1.08002 * 123.35104 * 179.97438 * 23 5 4 43 43 H 1.09002 * 109.47152 * 269.73468 * 25 24 3 44 44 H 1.09001 * 109.46980 * 149.73569 * 25 24 3 45 45 H 1.09004 * 109.47113 * 29.73549 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3510 2.3337 -1.4057 5 6 2.8510 3.7218 -0.4491 6 6 3.3107 5.0049 -0.9883 7 8 3.6346 5.9018 -0.2320 8 7 3.3748 5.1916 -2.3215 9 6 3.8348 6.4739 -2.8604 10 6 3.8119 6.4222 -4.3894 11 6 5.0907 5.8298 -5.0049 12 6 4.9781 6.9191 -6.0871 13 7 4.1746 6.5142 -7.2432 14 6 4.7843 6.2388 -8.4380 15 1 5.8574 6.3204 -8.5281 16 6 4.0231 5.8547 -9.5334 17 7 2.7154 5.7547 -9.4235 18 14 4.8548 5.4797 -11.1635 19 1 6.3215 5.6660 -11.0253 20 1 4.5682 4.0759 -11.5540 21 1 4.3357 6.3996 -12.2073 22 6 4.1983 7.7527 -5.0566 23 6 2.7428 3.4124 0.8775 24 6 2.2852 2.1358 1.1025 25 6 2.0891 1.5798 2.4895 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.1163 4.4769 -2.9243 32 1 3.1764 7.2706 -2.5143 33 1 4.8512 6.6681 -2.5182 34 1 2.8946 5.9857 -4.7845 35 1 5.9702 5.9348 -4.3696 36 1 4.9625 4.8175 -5.3880 37 1 5.9351 7.3577 -6.3694 38 1 3.2108 6.4412 -7.1624 39 1 2.1834 5.4860 -10.1888 40 1 3.3507 8.2905 -5.4814 41 1 4.8334 8.3844 -4.4354 42 1 2.9923 4.1021 1.6703 43 1 1.0743 1.7921 2.8259 44 1 2.8024 2.0435 3.1709 45 1 2.2489 0.5016 2.4747 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091356587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:53 Heat of formation + Delta-G solvation = -11.605475 kcal Electronic energy + Delta-G solvation = -23814.537998 eV Core-core repulsion = 20343.985936 eV Total energy + Delta-G solvation = -3470.552063 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05289 -40.03850 -39.32926 -36.07350 -35.01298 -34.71720 -32.18176 -31.36448 -29.16199 -28.13299 -26.45431 -26.01508 -25.16061 -23.40712 -22.96104 -21.80362 -20.10522 -19.61590 -19.28015 -18.87339 -17.55792 -16.90597 -16.72800 -16.56205 -15.94832 -15.81092 -15.44336 -15.28578 -15.15041 -14.75743 -14.60902 -14.53806 -14.10078 -13.78815 -13.44738 -13.31350 -13.14135 -13.03066 -12.97223 -12.93272 -12.71632 -12.61963 -12.21849 -12.13657 -12.07808 -12.03622 -11.64164 -11.61659 -11.50107 -11.23173 -10.95027 -10.80908 -10.25882 -9.67327 -9.37159 -9.00230 -7.95511 -5.23786 -0.55016 0.42960 0.88315 1.29695 1.48076 1.48442 1.58526 2.04614 2.09115 2.55640 3.37131 3.62311 3.69605 3.73524 3.76066 3.90294 4.08506 4.12903 4.17663 4.30382 4.37581 4.38383 4.42493 4.52950 4.68605 4.70867 4.75587 4.86980 4.88130 4.91847 4.97294 4.99162 5.04223 5.09136 5.12963 5.20017 5.31512 5.32803 5.41237 5.43904 5.52601 5.53429 5.64581 6.28282 6.33466 6.99733 7.33303 8.10119 8.32555 9.27979 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.002459 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.773715 B =11386.267125 C =12785.036107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.057 4.057 3 C -0.186 4.186 4 S 0.211 5.789 5 C -0.299 4.299 6 C 0.587 3.413 7 O -0.574 6.574 8 N -0.716 5.716 9 C 0.140 3.860 10 C -0.105 4.105 11 C -0.155 4.155 12 C 0.145 3.855 13 N -0.720 5.720 14 C -0.240 4.240 15 H 0.077 0.923 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.294 1.294 21 H -0.294 1.294 22 C -0.132 4.132 23 C -0.049 4.049 24 C -0.132 4.132 25 C -0.091 4.091 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.405 0.595 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.149 0.851 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -11.567 24.185 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.306 4.306 4 S 0.481 5.519 5 C -0.419 4.419 6 C 0.375 3.625 7 O -0.456 6.456 8 N -0.366 5.366 9 C 0.017 3.983 10 C -0.124 4.124 11 C -0.195 4.195 12 C 0.035 3.965 13 N -0.358 5.358 14 C -0.372 4.372 15 H 0.095 0.905 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.801 3.199 19 H -0.191 1.191 20 H -0.221 1.221 21 H -0.222 1.222 22 C -0.172 4.172 23 C -0.083 4.083 24 C -0.144 4.144 25 C -0.149 4.149 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.241 0.759 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.167 0.833 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.296 -11.205 22.929 25.623 hybrid contribution -0.163 -0.012 0.057 0.173 sum -2.459 -11.217 22.986 25.695 Atomic orbital electron populations 1.21783 0.93434 1.03104 1.02176 1.20315 0.96793 0.87812 1.04720 1.24479 1.06477 1.03049 0.96634 1.83110 1.59495 1.01638 1.07613 1.24428 1.18643 0.99734 0.99057 1.17243 0.76994 0.85965 0.82274 1.90781 1.51558 1.44364 1.58887 1.45909 1.67043 1.17643 1.05980 1.21402 1.00081 0.84409 0.92420 1.22519 0.98814 0.98858 0.92211 1.23761 0.97172 0.99529 0.99066 1.21407 0.94427 0.94467 0.86187 1.42314 1.05898 1.80519 1.07048 1.19703 0.92330 1.36473 0.88713 0.90529 1.25547 0.96140 1.03470 1.01637 1.69815 1.05127 1.56039 1.30981 0.85092 0.78127 0.76814 0.79843 1.19060 1.22079 1.22175 1.23339 1.00596 0.95675 0.97546 1.20801 0.96169 0.96525 0.94799 1.18883 1.04243 0.93243 0.98065 1.20582 1.02891 1.01649 0.89818 0.93324 0.90253 0.92164 0.90012 0.87851 0.75927 0.91407 0.90877 0.90122 0.88993 0.93310 0.92014 0.79365 0.94026 0.92217 0.87462 0.83311 0.90376 0.90962 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.90 71.98 0.71 -0.71 16 2 C -0.06 -0.60 6.03 29.85 0.18 -0.42 16 3 C -0.19 -3.00 5.53 24.68 0.14 -2.86 16 4 S 0.21 4.06 22.10 -56.49 -1.25 2.81 16 5 C -0.30 -7.29 6.45 24.08 0.16 -7.14 16 6 C 0.59 17.16 7.78 86.42 0.67 17.83 16 7 O -0.57 -20.34 16.84 -4.37 -0.07 -20.42 16 8 N -0.72 -18.92 5.55 -467.18 -2.59 -21.52 16 9 C 0.14 3.72 5.50 86.38 0.47 4.19 16 10 C -0.11 -3.08 3.62 -10.27 -0.04 -3.11 16 11 C -0.15 -4.97 7.44 31.18 0.23 -4.74 16 12 C 0.15 5.52 4.57 45.58 0.21 5.73 16 13 N -0.72 -35.49 5.31 -320.18 -1.70 -37.19 16 14 C -0.24 -13.16 9.97 84.03 0.84 -12.32 16 15 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 16 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 17 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 18 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 22 C -0.13 -4.04 7.39 31.12 0.23 -3.81 16 23 C -0.05 -1.05 9.80 21.72 0.21 -0.84 16 24 C -0.13 -2.23 5.78 -21.05 -0.12 -2.35 16 25 C -0.09 -0.96 9.85 71.24 0.70 -0.25 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.74 6.57 -2.38 -0.02 0.73 16 31 H 0.41 9.76 7.59 -92.71 -0.70 9.06 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.93 7.88 -2.39 -0.02 1.91 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.09 2.55 7.92 -2.38 -0.02 2.53 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 2.35 8.10 -2.39 -0.02 2.33 16 38 H 0.37 19.77 7.90 -92.71 -0.73 19.04 16 39 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 2.68 8.10 -2.38 -0.02 2.66 16 42 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 45 H 0.08 0.61 6.53 -2.38 -0.02 0.60 16 Total: -1.00 -68.34 385.01 1.32 -67.02 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.43 Total: 34.50 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 5.06 Total: -14.64 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.01 Total: -116.98 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.07 Total: -20.42 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.25 Total: 2.81 kcal Total: -68.34 1.32 -67.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091356587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.414 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds