Wall clock time and date at job start Tue Mar 31 2020 13:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.37469 * 122.45048 * 265.02106 * 3 2 1 5 5 C 1.36643 * 113.30077 * 179.97438 * 4 3 2 6 6 C 1.46578 * 125.46472 * 179.97438 * 5 4 3 7 7 O 1.21704 * 119.99747 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00594 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00276 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47002 * 179.97438 * 9 8 6 11 11 C 1.53781 * 113.61424 * 274.13306 * 10 9 8 12 12 C 1.53960 * 87.02113 * 220.05051 * 11 10 9 13 13 N 1.46506 * 113.53651 * 270.81322 * 12 11 10 14 14 C 1.36925 * 120.00055 * 252.49267 * 13 12 11 15 15 H 1.08003 * 120.00338 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99992 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00249 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99977 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47053 * 59.99839 * 18 16 14 20 20 H 1.48498 * 109.47220 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46896 * 299.99833 * 18 16 14 22 22 C 1.53777 * 87.10955 * 25.36312 * 12 11 10 23 23 S 1.75831 * 109.07971 * 0.02562 * 5 4 3 24 24 C 1.33817 * 122.44665 * 84.73731 * 3 2 1 25 25 C 1.50695 * 124.52253 * 0.02562 * 24 3 2 26 26 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 27 27 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 29 29 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 31 31 H 1.08001 * 123.34874 * 0.02582 * 4 3 2 32 32 H 0.97001 * 119.99879 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.46923 * 299.99903 * 9 8 6 34 34 H 1.09000 * 109.47383 * 59.99666 * 9 8 6 35 35 H 1.08996 * 112.85487 * 45.33495 * 10 9 8 36 36 H 1.09000 * 113.61618 * 334.57007 * 11 10 9 37 37 H 1.09001 * 113.60916 * 105.47906 * 11 10 9 38 38 H 1.08993 * 113.74355 * 139.94455 * 12 11 10 39 39 H 0.97002 * 119.99404 * 72.49428 * 13 12 11 40 40 H 0.96996 * 120.00069 * 180.02562 * 17 16 14 41 41 H 1.09003 * 113.61923 * 220.08968 * 22 12 11 42 42 H 1.09003 * 113.61784 * 89.18836 * 22 12 11 43 43 H 1.08994 * 109.47696 * 90.00395 * 25 24 3 44 44 H 1.09007 * 109.46687 * 210.00063 * 25 24 3 45 45 H 1.09001 * 109.47525 * 329.99122 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3731 2.0828 -1.1557 5 6 2.8044 3.3612 -0.9393 6 6 3.2333 4.3014 -1.9787 7 8 3.2230 3.9626 -3.1476 8 7 3.6401 5.5409 -1.6401 9 6 4.0692 6.4804 -2.6790 10 6 4.4767 7.8054 -2.0315 11 6 3.2988 8.7672 -1.8028 12 6 4.2431 9.9005 -2.2437 13 7 5.0040 10.4908 -1.1397 14 6 4.6910 11.7441 -0.6855 15 1 3.8829 12.2973 -1.1408 16 6 5.4124 12.3036 0.3602 17 7 6.3976 11.6297 0.9148 18 14 4.9849 14.0131 0.9803 19 1 3.5812 14.0272 1.4648 20 1 5.8963 14.3777 2.0945 21 1 5.1369 14.9929 -0.1251 22 6 5.0255 8.8367 -3.0316 23 16 2.7640 3.6971 0.7862 24 6 2.1740 2.1323 1.1245 25 6 1.8581 1.6187 2.5056 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.3058 1.6370 -2.1371 32 1 3.6487 5.8109 -0.7084 33 1 4.9193 6.0624 -3.2181 34 1 3.2477 6.6536 -3.3741 35 1 5.1075 7.6709 -1.1529 36 1 2.4637 8.6047 -2.4842 37 1 2.9885 8.8372 -0.7602 38 1 3.7653 10.6487 -2.8761 39 1 5.7296 9.9938 -0.7306 40 1 6.9014 12.0206 1.6457 41 1 6.1070 8.9625 -2.9798 42 1 4.6634 8.6931 -4.0497 43 1 2.7468 1.1542 2.9326 44 1 1.5420 2.4482 3.1382 45 1 1.0566 0.8824 2.4449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091357121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:55 Heat of formation + Delta-G solvation = 6.855937 kcal Electronic energy + Delta-G solvation = -23803.204974 eV Core-core repulsion = 20333.453458 eV Total energy + Delta-G solvation = -3469.751516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95334 -38.97449 -38.29842 -34.68355 -33.31253 -33.11662 -31.85443 -30.24536 -28.31379 -26.58971 -25.07024 -24.26299 -23.91961 -23.09262 -21.63828 -20.62355 -19.00880 -18.45582 -17.93288 -17.31961 -16.58978 -15.81374 -15.46568 -15.15931 -14.82905 -14.55578 -14.46570 -14.15209 -13.96434 -13.57550 -13.49718 -13.31101 -13.03245 -12.89663 -12.70416 -12.36659 -12.31410 -11.95512 -11.88902 -11.72923 -11.40444 -11.33607 -11.05989 -10.93266 -10.84282 -10.50605 -10.27087 -10.20306 -9.86338 -9.70169 -9.50073 -9.11929 -8.89915 -8.82591 -8.63578 -7.01666 -5.81944 -3.11032 0.29319 1.22925 1.64806 2.10855 3.11121 3.12890 3.41515 3.46054 3.46909 4.42821 4.53290 4.54607 4.70559 4.80610 4.91411 5.01234 5.04216 5.07168 5.14009 5.21727 5.25287 5.30647 5.43935 5.47033 5.53568 5.57817 5.60547 5.67137 5.73288 5.85689 5.87368 5.93928 6.06620 6.09402 6.18955 6.20421 6.35221 6.36678 6.57367 6.73252 6.88228 7.02963 7.41954 7.67299 8.09964 8.37179 9.47800 10.05267 10.39596 11.40391 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002350 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.912576 B =11912.454556 C =13031.223704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.122 4.122 4 C -0.048 4.048 5 C -0.266 4.266 6 C 0.588 3.412 7 O -0.536 6.536 8 N -0.719 5.719 9 C 0.132 3.868 10 C -0.121 4.121 11 C -0.169 4.169 12 C 0.168 3.832 13 N -0.705 5.705 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.147 4.147 23 S 0.205 5.795 24 C -0.197 4.197 25 C -0.087 4.087 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.400 0.600 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -23.695 0.261 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.135 4.135 4 C -0.081 4.081 5 C -0.386 4.386 6 C 0.374 3.626 7 O -0.415 6.415 8 N -0.370 5.370 9 C 0.009 3.991 10 C -0.140 4.140 11 C -0.210 4.210 12 C 0.055 3.945 13 N -0.344 5.344 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.187 4.187 23 S 0.475 5.525 24 C -0.317 4.317 25 C -0.145 4.145 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.168 0.832 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.399 -22.396 0.380 24.291 hybrid contribution -0.291 -0.413 0.174 0.534 sum -9.689 -22.809 0.554 24.788 Atomic orbital electron populations 1.21761 0.94779 1.01670 1.02345 1.20236 0.95980 0.91128 1.02884 1.18637 1.05001 0.98487 0.91325 1.20578 0.96004 0.91817 0.99736 1.24551 1.16481 1.00376 0.97238 1.16954 0.77215 0.81187 0.87251 1.90815 1.54965 1.77269 1.18484 1.45951 1.66697 1.12946 1.11375 1.21534 0.99541 0.88237 0.89782 1.22729 0.99889 0.91505 0.99862 1.23929 0.96350 0.99010 1.01737 1.21087 0.91758 0.91644 0.89970 1.42164 1.38235 1.17036 1.36964 1.19244 1.13218 0.92250 1.12681 0.91040 1.24765 0.98307 0.98712 0.99086 1.69647 1.23231 1.37812 1.27384 0.86243 0.77437 0.84166 0.78187 1.21224 1.21684 1.21191 1.23438 1.00940 0.96698 0.97579 1.83184 1.59923 1.10752 0.98666 1.24044 1.07672 0.99536 1.00415 1.20418 1.02550 1.01590 0.89953 0.92411 0.92334 0.92576 0.90848 0.90964 0.83152 0.76608 0.91527 0.91282 0.88869 0.91358 0.91475 0.91906 0.78110 0.93384 0.91256 0.90401 0.90403 0.90995 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.82 37.16 0.37 -0.54 16 2 C -0.06 -0.42 5.54 -27.88 -0.15 -0.58 16 3 C -0.12 -1.12 5.04 -106.45 -0.54 -1.66 16 4 C -0.05 -0.53 9.78 -40.44 -0.40 -0.93 16 5 C -0.27 -3.26 6.45 -36.80 -0.24 -3.50 16 6 C 0.59 8.56 7.78 -12.90 -0.10 8.46 16 7 O -0.54 -9.42 16.84 5.19 0.09 -9.33 16 8 N -0.72 -9.63 5.55 -61.65 -0.34 -9.97 16 9 C 0.13 1.83 5.50 -4.04 -0.02 1.80 16 10 C -0.12 -1.82 3.62 -89.81 -0.33 -2.15 16 11 C -0.17 -2.81 7.44 -25.82 -0.19 -3.01 16 12 C 0.17 3.25 4.57 -67.02 -0.31 2.94 16 13 N -0.71 -17.24 5.31 -52.55 -0.28 -17.52 16 14 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 18 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 23 S 0.21 2.03 22.10 -107.50 -2.38 -0.35 16 24 C -0.20 -1.74 6.28 -35.86 -0.23 -1.96 16 25 C -0.09 -0.53 9.71 36.00 0.35 -0.18 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.34 7.21 -51.93 -0.37 -0.04 16 29 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.07 0.41 7.47 -51.93 -0.39 0.02 16 31 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.40 4.85 7.59 -40.82 -0.31 4.54 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.38 9.94 7.90 -40.82 -0.32 9.62 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.40 6.37 -51.93 -0.33 0.07 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -31.54 384.09 -10.80 -42.33 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.16 Total: 9.98 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.22 Total: -11.06 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.10 Total: -54.42 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.38 Total: -0.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.54 -10.80 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091357121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.190 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds