Wall clock time and date at job start Tue Mar 31 2020 13:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.37469 * 122.45048 * 265.02106 * 3 2 1 5 5 C 1.36643 * 113.30077 * 179.97438 * 4 3 2 6 6 C 1.46578 * 125.46472 * 179.97438 * 5 4 3 7 7 O 1.21704 * 119.99747 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00594 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00276 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47002 * 179.97438 * 9 8 6 11 11 C 1.53781 * 113.61424 * 274.13306 * 10 9 8 12 12 C 1.53960 * 87.02113 * 220.05051 * 11 10 9 13 13 N 1.46506 * 113.53651 * 270.81322 * 12 11 10 14 14 C 1.36925 * 120.00055 * 252.49267 * 13 12 11 15 15 H 1.08003 * 120.00338 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99992 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00249 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99977 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47053 * 59.99839 * 18 16 14 20 20 H 1.48498 * 109.47220 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46896 * 299.99833 * 18 16 14 22 22 C 1.53777 * 87.10955 * 25.36312 * 12 11 10 23 23 S 1.75831 * 109.07971 * 0.02562 * 5 4 3 24 24 C 1.33817 * 122.44665 * 84.73731 * 3 2 1 25 25 C 1.50695 * 124.52253 * 0.02562 * 24 3 2 26 26 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 27 27 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 29 29 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 31 31 H 1.08001 * 123.34874 * 0.02582 * 4 3 2 32 32 H 0.97001 * 119.99879 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.46923 * 299.99903 * 9 8 6 34 34 H 1.09000 * 109.47383 * 59.99666 * 9 8 6 35 35 H 1.08996 * 112.85487 * 45.33495 * 10 9 8 36 36 H 1.09000 * 113.61618 * 334.57007 * 11 10 9 37 37 H 1.09001 * 113.60916 * 105.47906 * 11 10 9 38 38 H 1.08993 * 113.74355 * 139.94455 * 12 11 10 39 39 H 0.97002 * 119.99404 * 72.49428 * 13 12 11 40 40 H 0.96996 * 120.00069 * 180.02562 * 17 16 14 41 41 H 1.09003 * 113.61923 * 220.08968 * 22 12 11 42 42 H 1.09003 * 113.61784 * 89.18836 * 22 12 11 43 43 H 1.08994 * 109.47696 * 90.00395 * 25 24 3 44 44 H 1.09007 * 109.46687 * 210.00063 * 25 24 3 45 45 H 1.09001 * 109.47525 * 329.99122 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3731 2.0828 -1.1557 5 6 2.8044 3.3612 -0.9393 6 6 3.2333 4.3014 -1.9787 7 8 3.2230 3.9626 -3.1476 8 7 3.6401 5.5409 -1.6401 9 6 4.0692 6.4804 -2.6790 10 6 4.4767 7.8054 -2.0315 11 6 3.2988 8.7672 -1.8028 12 6 4.2431 9.9005 -2.2437 13 7 5.0040 10.4908 -1.1397 14 6 4.6910 11.7441 -0.6855 15 1 3.8829 12.2973 -1.1408 16 6 5.4124 12.3036 0.3602 17 7 6.3976 11.6297 0.9148 18 14 4.9849 14.0131 0.9803 19 1 3.5812 14.0272 1.4648 20 1 5.8963 14.3777 2.0945 21 1 5.1369 14.9929 -0.1251 22 6 5.0255 8.8367 -3.0316 23 16 2.7640 3.6971 0.7862 24 6 2.1740 2.1323 1.1245 25 6 1.8581 1.6187 2.5056 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.3058 1.6370 -2.1371 32 1 3.6487 5.8109 -0.7084 33 1 4.9193 6.0624 -3.2181 34 1 3.2477 6.6536 -3.3741 35 1 5.1075 7.6709 -1.1529 36 1 2.4637 8.6047 -2.4842 37 1 2.9885 8.8372 -0.7602 38 1 3.7653 10.6487 -2.8761 39 1 5.7296 9.9938 -0.7306 40 1 6.9014 12.0206 1.6457 41 1 6.1070 8.9625 -2.9798 42 1 4.6634 8.6931 -4.0497 43 1 2.7468 1.1542 2.9326 44 1 1.5420 2.4482 3.1382 45 1 1.0566 0.8824 2.4449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091357121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:54 Heat of formation + Delta-G solvation = -11.677298 kcal Electronic energy + Delta-G solvation = -23804.008635 eV Core-core repulsion = 20333.453458 eV Total energy + Delta-G solvation = -3470.555177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05822 -40.06370 -39.39338 -36.06914 -35.00133 -33.90108 -32.44537 -32.07217 -29.47727 -27.56844 -26.45126 -25.70993 -24.86316 -24.16573 -22.92687 -21.62290 -20.04569 -19.59668 -19.27635 -18.89144 -17.56023 -16.87601 -16.70604 -16.55408 -16.03952 -15.79349 -15.45687 -15.16654 -15.11075 -14.76819 -14.62089 -14.49932 -14.07557 -13.78872 -13.60237 -13.31035 -13.29454 -12.95052 -12.93096 -12.91208 -12.65580 -12.57762 -12.40663 -12.19996 -12.08582 -11.85427 -11.63054 -11.56839 -11.49617 -11.21967 -10.94587 -10.79439 -10.25446 -9.64123 -9.39089 -8.99958 -7.94800 -5.23167 -0.54691 0.43319 0.87306 1.29411 1.48284 1.50744 1.56816 2.04958 2.09447 2.56185 3.37375 3.63080 3.72117 3.76061 3.81276 3.89595 4.07626 4.13378 4.14630 4.30549 4.37687 4.38201 4.52626 4.60944 4.68780 4.70267 4.71036 4.73610 4.91864 4.93540 4.96962 4.97642 5.08519 5.09345 5.15159 5.20230 5.31560 5.32897 5.43886 5.44802 5.52576 5.53193 5.64614 6.28519 6.33976 7.00255 7.33666 8.10592 8.33183 9.28201 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002350 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.912576 B =11912.454556 C =13031.223704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.132 4.132 4 C -0.046 4.046 5 C -0.300 4.300 6 C 0.587 3.413 7 O -0.574 6.574 8 N -0.716 5.716 9 C 0.140 3.860 10 C -0.105 4.105 11 C -0.155 4.155 12 C 0.145 3.855 13 N -0.719 5.719 14 C -0.243 4.243 15 H 0.076 0.924 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.278 1.278 22 C -0.132 4.132 23 S 0.213 5.787 24 C -0.186 4.186 25 C -0.090 4.090 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.405 0.595 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 -24.896 0.731 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.080 4.080 5 C -0.420 4.420 6 C 0.375 3.625 7 O -0.457 6.457 8 N -0.366 5.366 9 C 0.017 3.983 10 C -0.124 4.124 11 C -0.195 4.195 12 C 0.035 3.965 13 N -0.357 5.357 14 C -0.375 4.375 15 H 0.094 0.906 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.802 3.198 19 H -0.204 1.204 20 H -0.223 1.223 21 H -0.205 1.205 22 C -0.172 4.172 23 S 0.483 5.517 24 C -0.306 4.306 25 C -0.148 4.148 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.165 0.835 32 H 0.241 0.759 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.773 -23.599 0.828 25.955 hybrid contribution 0.066 -0.116 0.012 0.134 sum -10.706 -23.716 0.840 26.034 Atomic orbital electron populations 1.21750 0.94256 1.02524 1.01835 1.20305 0.96338 0.89578 1.03841 1.18845 1.05168 0.99733 0.90619 1.20769 0.95219 0.91613 1.00445 1.24403 1.18892 1.00629 0.98106 1.17244 0.76512 0.81447 0.87270 1.90780 1.56808 1.77992 1.20072 1.45905 1.66309 1.12734 1.11622 1.21400 0.99705 0.87478 0.89728 1.22517 0.98697 0.91925 0.99229 1.23761 0.96972 0.97729 1.01063 1.21407 0.92968 0.92753 0.89368 1.42295 1.38673 1.16489 1.38292 1.19632 1.12558 0.93229 1.12099 0.90568 1.25552 0.98807 1.02436 0.99943 1.69800 1.24625 1.39378 1.28096 0.85223 0.77171 0.80020 0.77411 1.20427 1.22259 1.20460 1.23340 1.00052 0.94954 0.98822 1.83115 1.59970 1.11775 0.96848 1.24477 1.05787 0.98605 1.01730 1.20582 1.03709 1.02282 0.88203 0.93664 0.90814 0.92346 0.90595 0.89351 0.83546 0.75913 0.91408 0.90919 0.90098 0.89018 0.93315 0.92034 0.79358 0.94015 0.92218 0.87486 0.89047 0.90289 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.82 71.98 0.71 -0.78 16 2 C -0.06 -0.70 5.54 29.85 0.17 -0.53 16 3 C -0.13 -2.23 5.04 -21.05 -0.11 -2.33 16 4 C -0.05 -1.01 9.78 21.71 0.21 -0.80 16 5 C -0.30 -7.33 6.45 24.07 0.16 -7.17 16 6 C 0.59 17.17 7.78 86.42 0.67 17.85 16 7 O -0.57 -20.43 16.84 -4.36 -0.07 -20.50 16 8 N -0.72 -18.91 5.55 -467.19 -2.59 -21.50 16 9 C 0.14 3.73 5.50 86.38 0.47 4.20 16 10 C -0.10 -3.07 3.62 -10.27 -0.04 -3.11 16 11 C -0.15 -4.98 7.44 31.18 0.23 -4.75 16 12 C 0.15 5.53 4.57 45.58 0.21 5.73 16 13 N -0.72 -35.50 5.31 -320.17 -1.70 -37.20 16 14 C -0.24 -13.33 9.97 84.04 0.84 -12.50 16 15 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 16 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 17 N -0.97 -58.49 13.06 21.65 0.28 -58.20 16 18 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 C -0.13 -4.05 7.39 31.12 0.23 -3.82 16 23 S 0.21 4.02 22.10 -56.49 -1.25 2.78 16 24 C -0.19 -2.93 6.28 24.68 0.15 -2.77 16 25 C -0.09 -0.83 9.71 71.23 0.69 -0.14 16 26 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.56 7.21 -2.38 -0.02 0.55 16 29 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16 30 H 0.09 0.74 7.47 -2.39 -0.02 0.72 16 31 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.41 9.72 7.59 -92.71 -0.70 9.02 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.92 7.87 -2.39 -0.02 1.91 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.09 2.55 7.92 -2.39 -0.02 2.53 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16 39 H 0.37 19.78 7.90 -92.71 -0.73 19.04 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.11 2.68 8.10 -2.39 -0.02 2.66 16 43 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.10 0.64 6.37 -2.39 -0.02 0.62 16 Total: -1.00 -68.32 384.09 1.33 -66.99 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -0.43 Total: 34.70 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.07 Total: -14.72 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -4.01 Total: -116.90 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.07 Total: -20.50 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.25 Total: 2.78 kcal Total: -68.32 1.33 -66.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091357121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.317 kcal (2) G-P(sol) polarization free energy of solvation -68.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds