Wall clock time and date at job start Tue Mar 31 2020 13:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47082 * 2 1 4 4 C 1.33819 * 124.51787 * 90.00299 * 3 2 1 5 5 C 1.37472 * 115.09742 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29976 * 359.97438 * 5 4 3 7 7 C 1.46581 * 125.46074 * 179.97438 * 6 5 4 8 8 O 1.21707 * 120.00066 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00420 * 180.02562 * 7 6 5 10 10 C 1.46490 * 120.00109 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47021 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.91543 * 51.09254 * 11 10 9 13 13 C 1.54913 * 111.00185 * 287.19367 * 11 10 9 14 14 N 1.47425 * 104.83172 * 204.91813 * 13 11 10 15 15 C 1.36934 * 125.64598 * 204.16741 * 14 13 11 16 16 H 1.08001 * 120.00082 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.00056 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99528 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00255 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47048 * 89.99818 * 19 17 15 21 21 H 1.48496 * 109.47094 * 209.99851 * 19 17 15 22 22 H 1.48503 * 109.47024 * 330.00057 * 19 17 15 23 23 C 1.47016 * 108.70144 * 24.12623 * 14 13 11 24 24 C 1.54322 * 107.27584 * 358.94568 * 23 14 13 25 25 H 1.08994 * 110.72057 * 96.34399 * 24 23 14 26 26 C 1.53006 * 110.71873 * 219.44305 * 24 23 14 27 27 S 1.70615 * 124.52722 * 270.27013 * 3 2 1 28 28 H 1.09004 * 109.46706 * 59.99988 * 1 2 3 29 29 H 1.08998 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46935 * 299.99985 * 1 2 3 31 31 H 1.09001 * 109.46821 * 240.00270 * 2 1 3 32 32 H 1.08996 * 109.46894 * 120.00311 * 2 1 3 33 33 H 1.07993 * 122.45386 * 359.97438 * 4 3 2 34 34 H 1.08000 * 123.35300 * 179.97438 * 5 4 3 35 35 H 0.96998 * 119.99319 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.47511 * 59.99549 * 10 9 7 37 37 H 1.08997 * 109.47250 * 299.99462 * 10 9 7 38 38 H 1.08996 * 110.36871 * 86.07638 * 13 11 10 39 39 H 1.08998 * 110.36705 * 323.75587 * 13 11 10 40 40 H 0.97004 * 119.99644 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.88603 * 239.52323 * 23 14 13 42 42 H 1.09005 * 110.00815 * 118.43507 * 23 14 13 43 43 H 1.08994 * 109.47357 * 58.54604 * 26 24 23 44 44 H 1.08998 * 109.46865 * 178.54365 * 26 24 23 45 45 H 1.08994 * 109.46919 * 298.54190 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2852 2.1357 1.1026 5 6 2.7377 3.4142 0.8776 6 6 2.8479 3.7229 -0.4490 7 6 3.3024 5.0079 -0.9882 8 8 3.6192 5.9074 -0.2319 9 7 3.3687 5.1939 -2.3214 10 6 3.8224 6.4784 -2.8602 11 6 3.8048 6.4249 -4.3892 12 1 2.8406 6.0723 -4.7551 13 6 4.9591 5.5428 -4.9272 14 7 5.2129 6.0435 -6.2904 15 6 5.7828 5.3288 -7.3099 16 1 6.0890 4.3060 -7.1469 17 6 5.9670 5.9188 -8.5528 18 7 5.5933 7.1651 -8.7515 19 14 6.7451 4.9440 -9.9434 20 1 5.6843 4.2423 -10.7100 21 1 7.4789 5.8678 -10.8452 22 1 7.6906 3.9469 -9.3802 23 6 4.7518 7.4370 -6.3741 24 6 4.1593 7.8072 -4.9981 25 1 4.8990 8.3231 -4.3860 26 6 2.9028 8.6645 -5.1627 27 16 2.3484 2.3348 -1.4056 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1440 1.7376 2.0965 34 1 2.9819 4.1058 1.6704 35 1 3.1159 4.4772 -2.9241 36 1 4.8369 6.6790 -2.5156 37 1 3.1584 7.2715 -2.5164 38 1 4.6546 4.4967 -4.9578 39 1 5.8480 5.6620 -4.3077 40 1 5.7224 7.5775 -9.6200 41 1 3.9858 7.5284 -7.1443 42 1 5.5902 8.0940 -6.6057 43 1 2.1654 8.1192 -5.7517 44 1 2.4872 8.8923 -4.1811 45 1 3.1605 9.5928 -5.6724 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092794501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:16 Heat of formation + Delta-G solvation = 1.700766 kcal Electronic energy + Delta-G solvation = -24375.318929 eV Core-core repulsion = 20905.343868 eV Total energy + Delta-G solvation = -3469.975061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.81269 -38.35510 -37.77444 -34.69062 -34.06707 -32.94492 -30.73533 -29.97078 -28.57760 -26.14248 -25.61144 -24.76360 -22.95862 -22.60061 -21.41780 -20.12529 -19.65505 -19.01586 -17.99708 -16.78463 -16.48088 -15.77605 -15.54491 -15.14749 -14.79160 -14.50411 -14.34349 -13.95581 -13.81288 -13.56826 -13.25853 -13.06836 -12.91049 -12.60209 -12.50905 -12.22818 -11.89412 -11.80873 -11.67831 -11.50144 -11.40854 -11.21533 -11.06136 -10.82216 -10.77295 -10.26937 -10.08016 -10.00180 -9.90958 -9.72936 -9.55833 -9.11848 -8.84038 -8.78780 -8.60163 -6.82996 -5.71162 -3.04633 0.30011 1.22329 1.65183 2.18519 3.14583 3.17623 3.39594 3.44695 3.46752 4.29482 4.48993 4.62045 4.74344 4.84886 5.00356 5.09920 5.15375 5.20408 5.30735 5.32291 5.43175 5.51706 5.53223 5.56260 5.74132 5.76509 5.77324 5.85364 5.94442 6.02142 6.09403 6.13489 6.18898 6.28214 6.39357 6.48929 6.57074 6.62504 6.75580 6.93918 7.45568 7.56954 7.64511 7.84068 8.13752 8.26126 9.22246 9.82505 10.48776 11.40445 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002831 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.371883 B = 9889.609264 C =11220.275206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.194 4.194 4 C -0.154 4.154 5 C -0.055 4.055 6 C -0.266 4.266 7 C 0.588 3.412 8 O -0.535 6.535 9 N -0.720 5.720 10 C 0.133 3.867 11 C -0.114 4.114 12 H 0.081 0.919 13 C 0.141 3.859 14 N -0.606 5.606 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.183 3.817 24 C -0.110 4.110 25 H 0.068 0.932 26 C -0.134 4.134 27 S 0.206 5.794 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.399 0.601 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.020 0.980 40 H 0.252 0.748 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.053 0.947 44 H 0.044 0.956 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.695 -10.559 17.980 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.314 4.314 4 C -0.185 4.185 5 C -0.088 4.088 6 C -0.386 4.386 7 C 0.374 3.626 8 O -0.414 6.414 9 N -0.370 5.370 10 C 0.010 3.990 11 C -0.134 4.134 12 H 0.099 0.901 13 C 0.015 3.985 14 N -0.332 5.332 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.059 3.941 24 C -0.130 4.130 25 H 0.087 0.913 26 C -0.192 4.192 27 S 0.475 5.525 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.491 -10.140 16.686 22.165 hybrid contribution 0.444 -0.569 0.513 0.886 sum -10.047 -10.709 17.199 22.615 Atomic orbital electron populations 1.21808 0.94016 1.02217 1.02652 1.20164 0.96401 0.89373 1.03619 1.24289 1.07089 1.02102 0.97891 1.19937 1.04925 0.94136 0.99522 1.20732 0.96654 0.96201 0.95193 1.24651 1.16289 0.99536 0.98129 1.16950 0.77722 0.85570 0.82400 1.90821 1.49620 1.42798 1.58112 1.45966 1.67649 1.17370 1.06025 1.21460 1.00174 0.83912 0.93450 1.22698 1.00402 0.98563 0.91694 0.90108 1.21594 0.93760 0.95446 0.87725 1.44455 1.71884 1.10411 1.06456 1.19053 1.32457 0.95185 0.88966 0.90498 1.24803 1.01487 0.96487 0.97702 1.69965 1.52473 1.11770 1.22693 0.86124 0.78781 0.78729 0.82160 1.21624 1.21686 1.20715 1.21218 0.97484 0.85391 0.90032 1.22439 0.97197 0.93528 0.99827 0.91347 1.21693 0.97310 0.99796 1.00382 1.83142 1.59450 1.02538 1.07402 0.92281 0.91835 0.92191 0.90479 0.89797 0.83968 0.83028 0.76710 0.91061 0.91314 0.94651 0.96260 0.93768 0.93290 0.94010 0.92777 0.93668 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.06 -0.35 6.36 -27.88 -0.18 -0.53 16 3 C -0.19 -1.65 5.53 -35.86 -0.20 -1.85 16 4 C -0.15 -1.36 10.00 -41.41 -0.41 -1.78 16 5 C -0.05 -0.59 10.01 -40.43 -0.40 -1.00 16 6 C -0.27 -3.23 6.45 -36.79 -0.24 -3.47 16 7 C 0.59 8.66 7.78 -12.90 -0.10 8.56 16 8 O -0.53 -9.54 16.84 5.18 0.09 -9.46 16 9 N -0.72 -9.89 5.50 -61.65 -0.34 -10.23 16 10 C 0.13 1.98 5.14 -4.04 -0.02 1.96 16 11 C -0.11 -1.90 2.50 -88.47 -0.22 -2.12 16 12 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 13 C 0.14 2.84 6.65 -2.53 -0.02 2.82 16 14 N -0.61 -15.31 3.39 -170.07 -0.58 -15.89 16 15 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 16 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 19 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C 0.18 4.38 4.97 -3.07 -0.02 4.37 16 24 C -0.11 -1.99 3.01 -88.78 -0.27 -2.26 16 25 H 0.07 1.20 8.04 -51.93 -0.42 0.79 16 26 C -0.13 -2.09 9.13 37.16 0.34 -1.75 16 27 S 0.21 1.99 22.10 -107.50 -2.38 -0.39 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.40 4.88 7.59 -40.82 -0.31 4.57 16 36 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.05 1.29 7.06 -51.93 -0.37 0.92 16 42 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 43 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -32.15 379.96 -10.89 -43.04 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.34 Total: 0.90 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.62 Total: -4.32 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.34 Total: -52.50 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.38 Total: -0.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.15 -10.89 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092794501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.744 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds