Wall clock time and date at job start Tue Mar 31 2020 13:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47082 * 2 1 4 4 C 1.33819 * 124.51787 * 90.00299 * 3 2 1 5 5 C 1.37472 * 115.09742 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29976 * 359.97438 * 5 4 3 7 7 C 1.46581 * 125.46074 * 179.97438 * 6 5 4 8 8 O 1.21707 * 120.00066 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00420 * 180.02562 * 7 6 5 10 10 C 1.46490 * 120.00109 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47021 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.91543 * 51.09254 * 11 10 9 13 13 C 1.54913 * 111.00185 * 287.19367 * 11 10 9 14 14 N 1.47425 * 104.83172 * 204.91813 * 13 11 10 15 15 C 1.36934 * 125.64598 * 204.16741 * 14 13 11 16 16 H 1.08001 * 120.00082 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.00056 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99528 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00255 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47048 * 89.99818 * 19 17 15 21 21 H 1.48496 * 109.47094 * 209.99851 * 19 17 15 22 22 H 1.48503 * 109.47024 * 330.00057 * 19 17 15 23 23 C 1.47016 * 108.70144 * 24.12623 * 14 13 11 24 24 C 1.54322 * 107.27584 * 358.94568 * 23 14 13 25 25 H 1.08994 * 110.72057 * 96.34399 * 24 23 14 26 26 C 1.53006 * 110.71873 * 219.44305 * 24 23 14 27 27 S 1.70615 * 124.52722 * 270.27013 * 3 2 1 28 28 H 1.09004 * 109.46706 * 59.99988 * 1 2 3 29 29 H 1.08998 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46935 * 299.99985 * 1 2 3 31 31 H 1.09001 * 109.46821 * 240.00270 * 2 1 3 32 32 H 1.08996 * 109.46894 * 120.00311 * 2 1 3 33 33 H 1.07993 * 122.45386 * 359.97438 * 4 3 2 34 34 H 1.08000 * 123.35300 * 179.97438 * 5 4 3 35 35 H 0.96998 * 119.99319 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.47511 * 59.99549 * 10 9 7 37 37 H 1.08997 * 109.47250 * 299.99462 * 10 9 7 38 38 H 1.08996 * 110.36871 * 86.07638 * 13 11 10 39 39 H 1.08998 * 110.36705 * 323.75587 * 13 11 10 40 40 H 0.97004 * 119.99644 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.88603 * 239.52323 * 23 14 13 42 42 H 1.09005 * 110.00815 * 118.43507 * 23 14 13 43 43 H 1.08994 * 109.47357 * 58.54604 * 26 24 23 44 44 H 1.08998 * 109.46865 * 178.54365 * 26 24 23 45 45 H 1.08994 * 109.46919 * 298.54190 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2852 2.1357 1.1026 5 6 2.7377 3.4142 0.8776 6 6 2.8479 3.7229 -0.4490 7 6 3.3024 5.0079 -0.9882 8 8 3.6192 5.9074 -0.2319 9 7 3.3687 5.1939 -2.3214 10 6 3.8224 6.4784 -2.8602 11 6 3.8048 6.4249 -4.3892 12 1 2.8406 6.0723 -4.7551 13 6 4.9591 5.5428 -4.9272 14 7 5.2129 6.0435 -6.2904 15 6 5.7828 5.3288 -7.3099 16 1 6.0890 4.3060 -7.1469 17 6 5.9670 5.9188 -8.5528 18 7 5.5933 7.1651 -8.7515 19 14 6.7451 4.9440 -9.9434 20 1 5.6843 4.2423 -10.7100 21 1 7.4789 5.8678 -10.8452 22 1 7.6906 3.9469 -9.3802 23 6 4.7518 7.4370 -6.3741 24 6 4.1593 7.8072 -4.9981 25 1 4.8990 8.3231 -4.3860 26 6 2.9028 8.6645 -5.1627 27 16 2.3484 2.3348 -1.4056 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1440 1.7376 2.0965 34 1 2.9819 4.1058 1.6704 35 1 3.1159 4.4772 -2.9241 36 1 4.8369 6.6790 -2.5156 37 1 3.1584 7.2715 -2.5164 38 1 4.6546 4.4967 -4.9578 39 1 5.8480 5.6620 -4.3077 40 1 5.7224 7.5775 -9.6200 41 1 3.9858 7.5284 -7.1443 42 1 5.5902 8.0940 -6.6057 43 1 2.1654 8.1192 -5.7517 44 1 2.4872 8.8923 -4.1811 45 1 3.1605 9.5928 -5.6724 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092794501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:15 Heat of formation + Delta-G solvation = -17.087710 kcal Electronic energy + Delta-G solvation = -24376.133658 eV Core-core repulsion = 20905.343868 eV Total energy + Delta-G solvation = -3470.789790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96075 -39.67362 -38.80390 -36.10296 -34.76274 -34.59648 -32.54965 -31.24901 -29.58095 -27.84925 -26.89180 -25.91892 -24.44430 -23.24535 -22.54040 -21.66679 -21.07123 -20.13537 -19.02575 -18.66243 -17.50785 -16.89405 -16.76130 -16.49011 -16.10322 -15.68806 -15.53723 -15.08112 -14.93568 -14.72987 -14.51080 -14.30274 -14.12246 -13.80888 -13.45505 -13.32160 -13.26658 -13.12997 -12.87730 -12.79135 -12.68854 -12.44285 -12.39384 -12.07043 -11.94332 -11.84258 -11.68016 -11.59688 -11.48132 -11.38485 -11.08968 -10.69827 -10.26353 -9.64335 -9.54721 -8.89329 -7.84185 -5.19878 -0.51716 0.45298 0.90229 1.38178 1.46032 1.47952 1.56567 2.05583 2.15044 2.49737 3.33598 3.57627 3.66661 3.72985 3.86409 3.91109 3.94788 4.14983 4.33392 4.35941 4.41333 4.48541 4.49808 4.58728 4.72125 4.77333 4.80697 4.83280 4.93169 4.94919 5.05500 5.07420 5.12665 5.13974 5.21412 5.28940 5.35363 5.35609 5.43537 5.44138 5.47694 5.71810 5.82007 6.20664 6.36850 7.03566 7.11075 7.78378 8.43115 9.26047 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002831 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.371883 B = 9889.609264 C =11220.275206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.161 4.161 5 C -0.051 4.051 6 C -0.302 4.302 7 C 0.588 3.412 8 O -0.574 6.574 9 N -0.715 5.715 10 C 0.145 3.855 11 C -0.092 4.092 12 H 0.090 0.910 13 C 0.137 3.863 14 N -0.628 5.628 15 C -0.242 4.242 16 H 0.083 0.917 17 C -0.067 4.067 18 N -0.951 5.951 19 Si 0.978 3.022 20 H -0.284 1.284 21 H -0.296 1.296 22 H -0.269 1.269 23 C 0.192 3.808 24 C -0.100 4.100 25 H 0.075 0.925 26 C -0.127 4.127 27 S 0.219 5.781 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.168 0.832 34 H 0.150 0.850 35 H 0.406 0.594 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.017 0.983 40 H 0.246 0.754 41 H 0.017 0.983 42 H 0.000 1.000 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 -12.754 19.456 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.302 4.302 4 C -0.191 4.191 5 C -0.085 4.085 6 C -0.422 4.422 7 C 0.376 3.624 8 O -0.456 6.456 9 N -0.365 5.365 10 C 0.021 3.979 11 C -0.111 4.111 12 H 0.108 0.892 13 C 0.011 3.989 14 N -0.354 5.354 15 C -0.371 4.371 16 H 0.101 0.899 17 C -0.260 4.260 18 N -0.600 5.600 19 Si 0.806 3.194 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.194 1.194 23 C 0.067 3.933 24 C -0.120 4.120 25 H 0.094 0.906 26 C -0.185 4.185 27 S 0.488 5.512 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.185 0.815 34 H 0.168 0.832 35 H 0.242 0.758 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.019 0.981 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.670 -12.371 18.175 24.891 hybrid contribution 0.804 0.012 0.109 0.811 sum -10.867 -12.358 18.285 24.600 Atomic orbital electron populations 1.21810 0.93429 1.03107 1.02276 1.20317 0.96784 0.87800 1.04827 1.24702 1.05310 1.02980 0.97192 1.20132 1.04817 0.93269 1.00864 1.20944 0.95750 0.97060 0.94765 1.24480 1.18991 0.99617 0.99137 1.17260 0.76889 0.86103 0.82141 1.90790 1.51557 1.44352 1.58888 1.45864 1.67384 1.17174 1.06114 1.21242 1.00095 0.84912 0.91660 1.22492 0.99258 0.96526 0.92846 0.89210 1.21765 0.94966 0.96686 0.85438 1.44780 1.71729 1.11020 1.07910 1.19465 1.32084 0.95694 0.89881 0.89946 1.25659 1.02585 0.97546 1.00213 1.70195 1.53784 1.13284 1.22733 0.85081 0.77976 0.77376 0.78918 1.21060 1.22274 1.19424 1.20982 0.95201 0.84488 0.92665 1.22317 0.98411 0.94923 0.96374 0.90634 1.21642 0.95739 0.99029 1.02086 1.83057 1.59075 1.01487 1.07603 0.93044 0.90373 0.92212 0.89827 0.88058 0.81500 0.83211 0.75777 0.91968 0.90209 0.93510 0.96474 0.94461 0.96441 0.98149 0.93127 0.90598 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.06 -0.53 6.36 29.85 0.19 -0.34 16 3 C -0.18 -2.63 5.53 24.68 0.14 -2.50 16 4 C -0.16 -2.45 10.00 21.08 0.21 -2.24 16 5 C -0.05 -1.04 10.01 21.72 0.22 -0.83 16 6 C -0.30 -7.07 6.45 24.08 0.16 -6.91 16 7 C 0.59 16.98 7.78 86.42 0.67 17.65 16 8 O -0.57 -20.44 16.84 -4.37 -0.07 -20.51 16 9 N -0.71 -18.81 5.50 -467.18 -2.57 -21.38 16 10 C 0.14 4.09 5.14 86.38 0.44 4.53 16 11 C -0.09 -2.95 2.50 -9.40 -0.02 -2.97 16 12 H 0.09 2.78 8.04 -2.39 -0.02 2.76 16 13 C 0.14 5.44 6.65 86.86 0.58 6.02 16 14 N -0.63 -32.30 3.39 -691.99 -2.35 -34.65 16 15 C -0.24 -13.61 10.28 84.04 0.86 -12.75 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 18 N -0.95 -57.61 10.31 21.65 0.22 -57.39 16 19 Si 0.98 45.87 29.55 68.60 2.03 47.89 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 C 0.19 9.47 4.97 86.73 0.43 9.90 16 24 C -0.10 -3.60 3.01 -9.60 -0.03 -3.63 16 25 H 0.08 2.61 8.04 -2.39 -0.02 2.59 16 26 C -0.13 -3.79 9.13 71.98 0.66 -3.13 16 27 S 0.22 3.84 22.10 -56.49 -1.25 2.59 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.41 9.37 7.59 -92.71 -0.70 8.67 16 36 H 0.06 1.91 7.96 -2.39 -0.02 1.89 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.02 0.71 7.91 -2.39 -0.02 0.69 16 40 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.02 0.96 7.06 -2.38 -0.02 0.94 16 42 H 0.00 0.01 7.51 -2.38 -0.02 0.00 16 43 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -71.57 379.96 1.96 -69.60 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.27 Total: 14.92 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.68 Total: -1.08 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -4.69 Total: -113.41 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.07 Total: -20.51 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.25 Total: 2.59 kcal Total: -71.57 1.96 -69.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092794501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.514 kcal (2) G-P(sol) polarization free energy of solvation -71.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds