Wall clock time and date at job start Tue Mar 31 2020 13:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47156 * 2 1 4 4 C 1.37472 * 123.34978 * 264.97895 * 3 2 1 5 5 C 1.33819 * 115.09886 * 180.02562 * 4 3 2 6 6 S 1.70624 * 110.95586 * 359.72230 * 5 4 3 7 7 C 1.36650 * 123.35320 * 84.99437 * 3 2 1 8 8 C 1.46587 * 125.45726 * 359.97438 * 7 3 2 9 9 O 1.21702 * 119.99905 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00182 * 179.97438 * 8 7 3 11 11 C 1.46494 * 119.99924 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47093 * 180.02562 * 11 10 8 13 13 H 1.08997 * 110.77580 * 51.76189 * 12 11 10 14 14 C 1.54325 * 110.72022 * 288.52410 * 12 11 10 15 15 N 1.47290 * 107.30599 * 219.45263 * 14 12 11 16 16 C 1.36938 * 125.79079 * 178.92205 * 15 14 12 17 17 H 1.07995 * 120.00281 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99650 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00113 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46993 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47464 * 119.99742 * 20 18 16 23 23 H 1.48496 * 109.47378 * 240.00268 * 20 18 16 24 24 C 1.47425 * 108.55742 * 358.92448 * 15 14 12 25 25 C 1.54908 * 104.92961 * 24.15407 * 24 15 14 26 26 H 1.09008 * 111.00422 * 81.04917 * 25 24 15 27 27 C 1.52999 * 111.00368 * 204.85960 * 25 24 15 28 28 H 1.08995 * 109.47734 * 299.99696 * 1 2 3 29 29 H 1.09001 * 109.47156 * 60.00558 * 1 2 3 30 30 H 1.09000 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47320 * 239.99710 * 2 1 3 32 32 H 1.09004 * 109.46773 * 120.00092 * 2 1 3 33 33 H 1.07995 * 122.45037 * 0.03781 * 4 3 2 34 34 H 1.08000 * 124.52257 * 180.02562 * 5 4 3 35 35 H 0.96994 * 119.99369 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47310 * 60.00424 * 11 10 8 37 37 H 1.09004 * 109.47167 * 299.99783 * 11 10 8 38 38 H 1.09004 * 109.88239 * 338.86059 * 14 12 11 39 39 H 1.08999 * 109.88411 * 100.02489 * 14 12 11 40 40 H 0.97001 * 119.99611 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36696 * 265.26054 * 24 15 14 42 42 H 1.08995 * 110.36608 * 143.04891 * 24 15 14 43 43 H 1.09001 * 109.47276 * 58.55057 * 27 25 24 44 44 H 1.09003 * 109.46690 * 178.54597 * 27 25 24 45 45 H 1.08998 * 109.47248 * 298.54758 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3790 2.0998 -1.1439 5 6 2.8051 3.3538 -0.9526 6 16 2.7861 3.7586 0.7049 7 6 2.1889 2.1623 1.1371 8 6 1.8993 1.7027 2.4986 9 8 1.4822 0.5746 2.6842 10 7 2.0950 2.5294 3.5449 11 6 1.8051 2.0702 4.9054 12 6 2.1102 3.1934 5.8986 13 1 1.6127 4.1169 5.6028 14 6 3.6328 3.4103 6.0267 15 7 3.9203 3.6702 7.4477 16 6 5.1594 3.8935 7.9862 17 1 6.0331 3.8884 7.3514 18 6 5.2925 4.1264 9.3482 19 7 4.2278 4.1321 10.1220 20 14 6.9826 4.4317 10.0828 21 1 8.0070 4.3729 9.0092 22 1 7.0102 5.7723 10.7210 23 1 7.2745 3.3921 11.1022 24 6 2.6496 3.6499 8.1949 25 6 1.6956 2.7826 7.3362 26 1 1.8733 1.7207 7.5064 27 6 0.2335 3.1415 7.6090 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3121 1.6539 -2.1253 34 1 3.1147 4.0223 -1.7423 35 1 2.4278 3.4284 3.3969 36 1 2.4239 1.2030 5.1358 37 1 0.7528 1.7959 4.9798 38 1 4.1635 2.5162 5.6991 39 1 3.9373 4.2662 5.4244 40 1 4.3208 4.2953 11.0736 41 1 2.2541 4.6604 8.2982 42 1 2.7937 3.1976 9.1760 43 1 0.0716 4.1971 7.3907 44 1 -0.4136 2.5359 6.9744 45 1 0.0009 2.9471 8.6559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093222261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:16 Heat of formation + Delta-G solvation = 5.908593 kcal Electronic energy + Delta-G solvation = -24845.430237 eV Core-core repulsion = 21375.637641 eV Total energy + Delta-G solvation = -3469.792596 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.00382 -38.46398 -37.66063 -34.68946 -33.01100 -32.83809 -30.75402 -30.26618 -28.71266 -26.14200 -25.59520 -24.78495 -22.91736 -22.53992 -21.38706 -19.92455 -19.64342 -18.72219 -18.24262 -16.81287 -16.16449 -15.76660 -15.60133 -15.09166 -14.77245 -14.32857 -14.22967 -13.86609 -13.73046 -13.54014 -13.27758 -13.03381 -12.68983 -12.65848 -12.50466 -12.07891 -11.92477 -11.65057 -11.55799 -11.45745 -11.19652 -11.13845 -10.87543 -10.87096 -10.81468 -10.23008 -10.03385 -9.94303 -9.89627 -9.73413 -9.38983 -9.16896 -8.85569 -8.68034 -8.65779 -6.83551 -5.65592 -3.07300 0.32538 1.27781 1.66966 2.18348 3.14671 3.19072 3.39389 3.44976 3.47398 4.47847 4.58390 4.71078 4.93410 4.98768 5.12852 5.20681 5.23323 5.29486 5.33074 5.49643 5.50637 5.57236 5.61199 5.75760 5.79666 5.86826 5.90103 6.05664 6.06624 6.10739 6.19082 6.21838 6.26414 6.33348 6.43961 6.52504 6.59514 6.61801 6.79012 6.94028 7.47994 7.53509 7.63103 7.86200 8.17094 8.36078 9.21896 9.82441 10.47721 11.38127 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.002870 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.439724 B = 9752.323577 C =10621.205482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.230 4.230 6 S 0.199 5.801 7 C -0.267 4.267 8 C 0.588 3.412 9 O -0.527 6.527 10 N -0.721 5.721 11 C 0.134 3.866 12 C -0.111 4.111 13 H 0.077 0.923 14 C 0.140 3.860 15 N -0.605 5.605 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.159 3.841 25 C -0.110 4.110 26 H 0.072 0.928 27 C -0.134 4.134 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.397 0.603 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.018 0.982 40 H 0.251 0.749 41 H 0.013 0.987 42 H 0.107 0.893 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -2.589 -21.339 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.036 4.036 4 C -0.178 4.178 5 C -0.368 4.368 6 S 0.467 5.533 7 C -0.388 4.388 8 C 0.374 3.626 9 O -0.406 6.406 10 N -0.372 5.372 11 C 0.011 3.989 12 C -0.130 4.130 13 H 0.095 0.905 14 C 0.014 3.986 15 N -0.331 5.331 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.034 3.966 25 C -0.130 4.130 26 H 0.090 0.910 27 C -0.192 4.192 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.161 0.839 34 H 0.186 0.814 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.124 0.876 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.537 -1.990 -20.150 21.605 hybrid contribution 0.798 -0.365 -0.765 1.164 sum -6.739 -2.355 -20.915 22.099 Atomic orbital electron populations 1.21597 0.94316 1.01752 1.01712 1.20415 0.96502 0.90587 1.03615 1.19523 0.96219 0.97491 0.90411 1.19914 1.03996 0.94268 0.99666 1.25256 1.08214 1.01409 1.01943 1.83159 1.60114 1.11239 0.98744 1.24514 1.16890 0.99652 0.97724 1.16905 0.77951 0.85059 0.82719 1.90785 1.45959 1.18758 1.85088 1.45984 1.67353 1.16804 1.07035 1.21496 1.00976 0.97548 0.78831 1.22515 0.97974 0.97178 0.95348 0.90488 1.21400 0.91648 0.97338 0.88222 1.44549 1.03600 1.83788 1.01122 1.19120 0.83692 1.40703 0.91434 0.90493 1.24784 0.97512 1.02295 0.96130 1.69805 1.26369 1.56468 1.04391 0.86004 0.83092 0.77447 0.78994 1.20548 1.21773 1.21738 1.21979 0.82527 0.95421 0.96682 1.22598 0.95521 1.01022 0.93908 0.90979 1.21651 0.95607 1.00750 1.01203 0.92160 0.93343 0.92356 0.91414 0.88622 0.83911 0.81449 0.76841 0.90989 0.91340 0.95734 0.96380 0.93792 0.96936 0.87573 0.93043 0.93667 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.78 37.16 0.36 -1.00 16 2 C -0.07 -0.76 5.50 -27.88 -0.15 -0.92 16 3 C -0.02 -0.24 5.16 -105.48 -0.54 -0.78 16 4 C -0.15 -1.31 9.96 -41.41 -0.41 -1.72 16 5 C -0.23 -1.88 10.92 29.18 0.32 -1.56 16 6 S 0.20 1.87 22.16 -107.50 -2.38 -0.51 16 7 C -0.27 -3.25 6.45 -36.79 -0.24 -3.49 16 8 C 0.59 8.44 7.78 -12.89 -0.10 8.34 16 9 O -0.53 -8.81 13.72 5.19 0.07 -8.74 16 10 N -0.72 -9.81 5.47 -61.65 -0.34 -10.15 16 11 C 0.13 2.01 5.02 -4.04 -0.02 1.98 16 12 C -0.11 -1.84 2.43 -88.78 -0.22 -2.06 16 13 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 14 C 0.14 2.85 6.77 -2.92 -0.02 2.83 16 15 N -0.60 -15.35 3.40 -169.86 -0.58 -15.93 16 16 C -0.22 -6.15 10.28 -15.06 -0.15 -6.31 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.16 3.78 5.35 -2.53 -0.01 3.76 16 25 C -0.11 -2.02 3.09 -88.47 -0.27 -2.29 16 26 H 0.07 1.35 8.05 -51.92 -0.42 0.93 16 27 C -0.13 -2.05 9.29 37.16 0.35 -1.70 16 28 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.10 1.23 6.33 -51.93 -0.33 0.90 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.40 4.82 7.58 -40.82 -0.31 4.51 16 36 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.51 7.68 -51.93 -0.40 0.11 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.01 0.32 8.04 -51.93 -0.42 -0.10 16 42 H 0.11 2.87 5.86 -51.93 -0.30 2.57 16 43 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -31.26 373.39 -10.45 -41.71 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.17 Total: 2.47 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.21 Total: -5.34 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.36 Total: -52.25 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.38 Total: -0.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.26 -10.45 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093222261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.615 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds