Wall clock time and date at job start Tue Mar 31 2020 13:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47156 * 2 1 4 4 C 1.37472 * 123.34978 * 264.97895 * 3 2 1 5 5 C 1.33819 * 115.09886 * 180.02562 * 4 3 2 6 6 S 1.70624 * 110.95586 * 359.72230 * 5 4 3 7 7 C 1.36650 * 123.35320 * 84.99437 * 3 2 1 8 8 C 1.46587 * 125.45726 * 359.97438 * 7 3 2 9 9 O 1.21702 * 119.99905 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00182 * 179.97438 * 8 7 3 11 11 C 1.46494 * 119.99924 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47093 * 180.02562 * 11 10 8 13 13 H 1.08997 * 110.77580 * 51.76189 * 12 11 10 14 14 C 1.54325 * 110.72022 * 288.52410 * 12 11 10 15 15 N 1.47290 * 107.30599 * 219.45263 * 14 12 11 16 16 C 1.36938 * 125.79079 * 178.92205 * 15 14 12 17 17 H 1.07995 * 120.00281 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99650 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00113 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46993 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47464 * 119.99742 * 20 18 16 23 23 H 1.48496 * 109.47378 * 240.00268 * 20 18 16 24 24 C 1.47425 * 108.55742 * 358.92448 * 15 14 12 25 25 C 1.54908 * 104.92961 * 24.15407 * 24 15 14 26 26 H 1.09008 * 111.00422 * 81.04917 * 25 24 15 27 27 C 1.52999 * 111.00368 * 204.85960 * 25 24 15 28 28 H 1.08995 * 109.47734 * 299.99696 * 1 2 3 29 29 H 1.09001 * 109.47156 * 60.00558 * 1 2 3 30 30 H 1.09000 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47320 * 239.99710 * 2 1 3 32 32 H 1.09004 * 109.46773 * 120.00092 * 2 1 3 33 33 H 1.07995 * 122.45037 * 0.03781 * 4 3 2 34 34 H 1.08000 * 124.52257 * 180.02562 * 5 4 3 35 35 H 0.96994 * 119.99369 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47310 * 60.00424 * 11 10 8 37 37 H 1.09004 * 109.47167 * 299.99783 * 11 10 8 38 38 H 1.09004 * 109.88239 * 338.86059 * 14 12 11 39 39 H 1.08999 * 109.88411 * 100.02489 * 14 12 11 40 40 H 0.97001 * 119.99611 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36696 * 265.26054 * 24 15 14 42 42 H 1.08995 * 110.36608 * 143.04891 * 24 15 14 43 43 H 1.09001 * 109.47276 * 58.55057 * 27 25 24 44 44 H 1.09003 * 109.46690 * 178.54597 * 27 25 24 45 45 H 1.08998 * 109.47248 * 298.54758 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3790 2.0998 -1.1439 5 6 2.8051 3.3538 -0.9526 6 16 2.7861 3.7586 0.7049 7 6 2.1889 2.1623 1.1371 8 6 1.8993 1.7027 2.4986 9 8 1.4822 0.5746 2.6842 10 7 2.0950 2.5294 3.5449 11 6 1.8051 2.0702 4.9054 12 6 2.1102 3.1934 5.8986 13 1 1.6127 4.1169 5.6028 14 6 3.6328 3.4103 6.0267 15 7 3.9203 3.6702 7.4477 16 6 5.1594 3.8935 7.9862 17 1 6.0331 3.8884 7.3514 18 6 5.2925 4.1264 9.3482 19 7 4.2278 4.1321 10.1220 20 14 6.9826 4.4317 10.0828 21 1 8.0070 4.3729 9.0092 22 1 7.0102 5.7723 10.7210 23 1 7.2745 3.3921 11.1022 24 6 2.6496 3.6499 8.1949 25 6 1.6956 2.7826 7.3362 26 1 1.8733 1.7207 7.5064 27 6 0.2335 3.1415 7.6090 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3121 1.6539 -2.1253 34 1 3.1147 4.0223 -1.7423 35 1 2.4278 3.4284 3.3969 36 1 2.4239 1.2030 5.1358 37 1 0.7528 1.7959 4.9798 38 1 4.1635 2.5162 5.6991 39 1 3.9373 4.2662 5.4244 40 1 4.3208 4.2953 11.0736 41 1 2.2541 4.6604 8.2982 42 1 2.7937 3.1976 9.1760 43 1 0.0716 4.1971 7.3907 44 1 -0.4136 2.5359 6.9744 45 1 0.0009 2.9471 8.6559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093222261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:16 Heat of formation + Delta-G solvation = -12.271550 kcal Electronic energy + Delta-G solvation = -24846.218587 eV Core-core repulsion = 21375.637641 eV Total energy + Delta-G solvation = -3470.580946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06420 -39.76436 -38.78499 -36.08000 -34.70998 -33.64028 -32.55592 -31.46202 -29.88165 -27.86743 -26.87235 -25.99838 -24.46614 -23.30178 -22.51689 -21.53607 -21.05945 -19.81427 -19.09783 -18.78694 -17.32326 -16.84463 -16.80139 -16.51684 -15.96896 -15.72101 -15.52894 -15.02218 -14.86247 -14.62093 -14.56413 -14.28623 -14.03273 -13.83218 -13.54578 -13.41285 -13.25272 -13.02402 -12.83055 -12.77455 -12.68716 -12.48416 -12.39315 -12.02058 -11.93846 -11.82764 -11.65184 -11.61034 -11.42976 -11.24629 -10.87505 -10.74814 -10.23882 -9.72712 -9.40230 -8.88306 -7.77324 -5.21796 -0.46453 0.52771 0.96031 1.42267 1.46045 1.46953 1.57188 2.09160 2.16702 2.48795 3.31677 3.58520 3.72968 3.84992 3.87104 3.90811 3.97189 4.18072 4.32920 4.36503 4.48505 4.49258 4.54810 4.61269 4.74499 4.76484 4.77885 4.83950 4.90944 4.96227 5.08251 5.09042 5.11489 5.14659 5.29927 5.33981 5.37847 5.39114 5.46475 5.49972 5.54518 5.72328 5.84340 6.31762 6.42201 7.10373 7.11270 7.78207 8.42436 9.24236 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.002870 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.439724 B = 9752.323577 C =10621.205482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.022 4.022 4 C -0.157 4.157 5 C -0.213 4.213 6 S 0.213 5.787 7 C -0.307 4.307 8 C 0.585 3.415 9 O -0.559 6.559 10 N -0.718 5.718 11 C 0.147 3.853 12 C -0.090 4.090 13 H 0.095 0.905 14 C 0.137 3.863 15 N -0.629 5.629 16 C -0.238 4.238 17 H 0.079 0.921 18 C -0.067 4.067 19 N -0.947 5.947 20 Si 0.979 3.021 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.162 3.838 25 C -0.100 4.100 26 H 0.066 0.934 27 C -0.127 4.127 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.169 0.831 34 H 0.200 0.800 35 H 0.405 0.595 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.019 0.981 39 H 0.027 0.973 40 H 0.247 0.753 41 H -0.009 1.009 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 -2.034 -24.223 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 C -0.038 4.038 4 C -0.187 4.187 5 C -0.351 4.351 6 S 0.482 5.518 7 C -0.426 4.426 8 C 0.373 3.627 9 O -0.440 6.440 10 N -0.369 5.369 11 C 0.024 3.976 12 C -0.110 4.110 13 H 0.113 0.887 14 C 0.012 3.988 15 N -0.354 5.354 16 C -0.367 4.367 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.597 5.597 20 Si 0.808 3.192 21 H -0.192 1.192 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.037 3.963 25 C -0.120 4.120 26 H 0.085 0.915 27 C -0.185 4.185 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.186 0.814 34 H 0.217 0.783 35 H 0.241 0.759 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.009 0.991 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.689 -1.421 -23.067 24.356 hybrid contribution 0.878 -0.523 0.045 1.023 sum -6.810 -1.944 -23.022 24.087 Atomic orbital electron populations 1.21546 0.93967 1.02142 1.01187 1.20414 0.96806 0.90689 1.03347 1.19802 0.95411 0.97580 0.90988 1.20122 1.04133 0.94502 0.99976 1.25695 1.06082 1.01486 1.01838 1.83088 1.59544 1.09347 0.99838 1.24401 1.19714 1.01761 0.96773 1.17242 0.77189 0.84592 0.83655 1.90764 1.47466 1.20043 1.85762 1.45877 1.67420 1.17192 1.06395 1.21229 1.01196 0.96028 0.79172 1.22348 0.95243 0.98537 0.94825 0.88702 1.21558 0.94299 0.97207 0.85771 1.44870 1.03402 1.83734 1.03433 1.19472 0.84982 1.40339 0.91923 0.90349 1.25619 1.01046 1.02690 0.96601 1.70064 1.28146 1.57318 1.04190 0.84996 0.79275 0.76840 0.78133 1.19203 1.21795 1.21893 1.21755 0.83422 0.94841 0.96252 1.22435 0.96345 0.99512 0.93696 0.91513 1.21603 0.93479 1.01592 1.01807 0.94676 0.91701 0.91574 0.89067 0.91413 0.81351 0.78289 0.75925 0.92678 0.90258 0.96265 0.95480 0.94351 0.99121 0.91286 0.92534 0.90846 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.78 71.98 0.70 -1.79 16 2 C -0.07 -1.49 5.50 29.85 0.16 -1.32 16 3 C -0.02 -0.45 5.16 -20.42 -0.11 -0.55 16 4 C -0.16 -2.30 9.96 21.08 0.21 -2.09 16 5 C -0.21 -2.72 10.92 66.81 0.73 -1.99 16 6 S 0.21 3.55 22.16 -56.49 -1.25 2.30 16 7 C -0.31 -7.15 6.45 24.08 0.16 -7.00 16 8 C 0.59 16.73 7.78 86.42 0.67 17.41 16 9 O -0.56 -19.05 13.72 -4.36 -0.06 -19.11 16 10 N -0.72 -19.02 5.47 -467.17 -2.55 -21.57 16 11 C 0.15 4.28 5.02 86.38 0.43 4.71 16 12 C -0.09 -2.92 2.43 -9.60 -0.02 -2.94 16 13 H 0.09 2.78 8.01 -2.39 -0.02 2.76 16 14 C 0.14 5.56 6.77 86.68 0.59 6.15 16 15 N -0.63 -32.59 3.40 -691.31 -2.35 -34.95 16 16 C -0.24 -13.51 10.28 84.03 0.86 -12.64 16 17 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 18 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 19 N -0.95 -56.74 10.09 21.65 0.22 -56.52 16 20 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 C 0.16 7.96 5.35 86.85 0.47 8.42 16 25 C -0.10 -3.63 3.09 -9.40 -0.03 -3.66 16 26 H 0.07 2.50 8.05 -2.38 -0.02 2.48 16 27 C -0.13 -3.69 9.29 71.98 0.67 -3.02 16 28 H 0.03 0.84 7.60 -2.39 -0.02 0.82 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 32 H 0.07 1.77 6.33 -2.38 -0.02 1.76 16 33 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.41 9.35 7.58 -92.71 -0.70 8.65 16 36 H 0.05 1.81 7.93 -2.39 -0.02 1.79 16 37 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.02 0.81 7.68 -2.38 -0.02 0.79 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 41 H -0.01 -0.48 8.04 -2.39 -0.02 -0.50 16 42 H 0.07 3.92 5.86 -2.39 -0.01 3.90 16 43 H 0.06 1.59 8.11 -2.39 -0.02 1.57 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -70.31 373.39 2.27 -68.04 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.28 Total: 17.44 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 5.96 Total: -3.69 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.69 Total: -113.03 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.06 Total: -19.11 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.25 Total: 2.30 kcal Total: -70.31 2.27 -68.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093222261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.771 kcal (2) G-P(sol) polarization free energy of solvation -70.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds