Wall clock time and date at job start Tue Mar 31 2020 14:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47191 * 1 3 3 C 1.17406 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 219.75747 * 3 2 1 5 5 N 1.46895 * 109.46953 * 163.01831 * 4 3 2 6 6 C 1.48520 * 111.00341 * 290.12572 * 5 4 3 7 7 C 1.54306 * 104.69517 * 200.77414 * 6 5 4 8 8 H 1.08996 * 112.04783 * 260.94931 * 7 6 5 9 9 C 1.53759 * 109.08306 * 136.29988 * 7 6 5 10 10 N 1.47205 * 106.40331 * 228.02801 * 9 7 6 11 11 C 1.34777 * 126.70388 * 211.29068 * 10 9 7 12 12 O 1.21283 * 120.00463 * 180.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 359.74393 * 11 10 9 14 14 S 1.80997 * 109.47151 * 180.27780 * 13 11 10 15 15 C 1.76196 * 100.00314 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00626 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99674 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00584 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47012 * 89.99727 * 19 17 15 21 21 H 1.48501 * 109.47302 * 209.99797 * 19 17 15 22 22 H 1.48501 * 109.46788 * 330.00118 * 19 17 15 23 23 C 1.47205 * 106.59656 * 31.54574 * 10 9 7 24 24 C 1.54039 * 106.25966 * 328.37772 * 23 10 9 25 25 C 1.53004 * 113.03201 * 256.35338 * 24 23 10 26 26 C 1.48524 * 110.99915 * 174.72111 * 5 4 3 27 27 H 1.09007 * 109.47005 * 157.22616 * 1 2 3 28 28 H 1.09002 * 109.47136 * 277.21937 * 1 2 3 29 29 H 1.08998 * 109.47578 * 37.22070 * 1 2 3 30 30 H 1.08996 * 109.46678 * 43.01776 * 4 3 2 31 31 H 1.09002 * 109.46481 * 283.01775 * 4 3 2 32 32 H 1.09003 * 110.39529 * 81.96869 * 6 5 4 33 33 H 1.09004 * 110.48892 * 319.62428 * 6 5 4 34 34 H 1.08998 * 110.07221 * 108.79191 * 9 7 6 35 35 H 1.08997 * 110.11836 * 347.28114 * 9 7 6 36 36 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 37 37 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 38 38 H 0.97003 * 120.00297 * 179.97438 * 18 17 15 39 39 H 1.09004 * 110.06847 * 87.69121 * 23 10 9 40 40 H 1.08996 * 110.07142 * 209.21819 * 23 10 9 41 41 H 1.09000 * 109.46901 * 178.78817 * 25 24 23 42 42 H 1.08996 * 109.46969 * 298.78926 * 25 24 23 43 43 H 1.09000 * 109.46669 * 58.79034 * 25 24 23 44 44 H 1.08999 * 110.39907 * 278.03490 * 26 5 4 45 45 H 1.09002 * 110.39454 * 40.31244 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 0.0004 5 7 4.6067 1.3266 -0.4039 6 6 4.3345 1.5783 -1.8421 7 6 5.3271 2.6909 -2.2395 8 1 4.8583 3.6748 -2.2446 9 6 5.9536 2.3432 -3.6000 10 7 7.4061 2.5279 -3.4481 11 6 8.2736 2.9126 -4.4052 12 8 9.4527 3.0261 -4.1448 13 6 7.7795 3.1955 -5.8004 14 16 9.1742 3.6782 -6.8482 15 6 8.3339 3.9410 -8.3744 16 1 7.2657 3.7932 -8.4352 17 6 9.0443 4.3390 -9.4984 18 7 10.3460 4.5206 -9.4240 19 14 8.1534 4.6182 -11.1162 20 1 7.7115 6.0335 -11.2001 21 1 9.0708 4.3184 -12.2448 22 1 6.9694 3.7248 -11.1899 23 6 7.7270 2.2044 -2.0484 24 6 6.4915 2.6032 -1.2194 25 6 6.6840 3.9113 -0.4495 26 6 6.0857 1.4049 -0.2937 27 1 -0.3633 -0.9476 -0.3978 28 1 -0.3633 0.1291 1.0195 29 1 -0.3634 0.8183 -0.6216 30 1 4.4820 -0.7494 -0.7006 31 1 4.4811 -0.2295 1.0018 32 1 3.3080 1.9178 -1.9808 33 1 4.5185 0.6780 -2.4285 34 1 5.5700 3.0121 -4.3704 35 1 5.7335 1.3080 -3.8605 36 1 7.3113 2.2997 -6.2088 37 1 7.0503 4.0051 -5.7705 38 1 10.8426 4.7984 -10.2096 39 1 7.9203 1.1365 -1.9461 40 1 8.5965 2.7752 -1.7224 41 1 5.7715 4.1486 0.0974 42 1 7.5103 3.8014 0.2528 43 1 6.9072 4.7158 -1.1503 44 1 6.3795 1.6136 0.7350 45 1 6.5419 0.4764 -0.6371 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101136191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:47 Heat of formation + Delta-G solvation = 23.397762 kcal Electronic energy + Delta-G solvation = -24349.462317 eV Core-core repulsion = 20880.428108 eV Total energy + Delta-G solvation = -3469.034209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.87691 -38.65615 -36.42651 -34.36009 -32.88536 -32.43428 -31.39399 -29.70640 -29.24696 -26.83344 -26.33086 -25.93144 -25.38105 -23.03587 -21.60225 -19.49121 -19.27170 -17.63223 -17.11506 -16.71080 -16.22324 -15.64338 -15.36599 -15.23054 -14.83507 -14.79541 -14.38305 -14.04241 -13.88738 -13.83643 -13.70590 -13.50527 -13.31137 -12.90281 -12.70266 -12.46915 -12.27325 -12.22938 -12.06876 -11.70419 -11.53897 -11.07008 -11.04140 -11.01752 -10.97679 -10.87257 -10.74410 -10.22918 -10.04539 -9.82130 -9.42328 -9.07220 -8.91230 -8.56122 -8.24244 -6.51085 -6.22159 -3.92954 2.28484 2.42607 2.89562 3.03148 3.21921 3.25520 3.29925 3.59092 3.68517 3.85469 4.08721 4.14024 4.20017 4.47682 4.74043 4.81286 4.87626 4.92883 4.96639 5.01288 5.08535 5.12927 5.18313 5.21734 5.26863 5.29946 5.37959 5.43957 5.45320 5.52640 5.54385 5.57382 5.67201 5.72121 5.81338 5.85774 5.88898 5.92301 6.09092 6.12270 6.35699 6.40734 6.53030 7.35482 7.58880 7.67931 8.34607 8.53783 9.23010 10.85254 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.002477 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.180173 B =11299.751276 C =12493.696426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.181 4.181 3 C -0.181 4.181 4 C 0.158 3.842 5 N -0.506 5.506 6 C 0.042 3.958 7 C -0.098 4.098 8 H 0.099 0.901 9 C 0.105 3.895 10 N -0.624 5.624 11 C 0.552 3.448 12 O -0.515 6.515 13 C -0.147 4.147 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.116 3.884 24 C -0.069 4.069 25 C -0.125 4.125 26 C 0.043 3.957 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.204 -8.379 20.961 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.182 4.182 3 C -0.181 4.181 4 C 0.031 3.969 5 N -0.229 5.229 6 C -0.086 4.086 7 C -0.118 4.118 8 H 0.117 0.883 9 C -0.019 4.019 10 N -0.361 5.361 11 C 0.340 3.660 12 O -0.388 6.388 13 C -0.297 4.297 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.008 4.008 24 C -0.071 4.071 25 C -0.183 4.183 26 C -0.085 4.085 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.453 -7.759 21.510 27.598 hybrid contribution -1.686 -0.666 -1.872 2.606 sum -17.139 -8.424 19.637 27.392 Atomic orbital electron populations 1.18860 0.84665 1.03041 1.03049 1.22401 0.93869 1.00381 1.01586 1.21941 0.93156 1.01667 1.01348 1.19086 0.85150 0.90649 1.02014 1.65397 1.11643 1.26846 1.19042 1.23262 0.99987 0.97299 0.88066 1.22782 0.95113 0.99995 0.93916 0.88289 1.22198 0.80873 1.01424 0.97375 1.48540 1.07870 1.69420 1.10223 1.20028 0.85170 0.75342 0.85421 1.90712 1.16013 1.50654 1.81468 1.23509 1.06662 1.04552 0.95005 1.85401 1.06481 1.87924 1.03544 1.22852 0.96325 1.53614 0.95510 0.90945 1.24997 0.94962 0.94719 0.98935 1.70020 1.06198 1.43691 1.30341 0.86161 0.79189 0.78674 0.81438 1.20250 1.20740 1.19702 1.22093 0.97392 1.00167 0.81148 1.22486 0.94193 0.95828 0.94573 1.21626 1.02071 0.94876 0.99685 1.23713 0.87238 0.96811 1.00732 0.90291 0.90242 0.90053 0.92152 0.88418 0.89815 0.92993 0.89987 0.91442 0.89332 0.89281 0.92175 0.91693 0.89859 0.91618 0.92168 0.92031 0.89433 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.22 10.32 34.37 0.35 0.14 16 2 C -0.18 -1.63 14.13 -37.13 -0.52 -2.16 16 3 C -0.18 -1.72 13.07 -37.12 -0.49 -2.20 16 4 C 0.16 1.23 5.31 -6.61 -0.04 1.20 16 5 N -0.51 -4.33 5.35 -231.98 -1.24 -5.57 16 6 C 0.04 0.36 5.50 -2.24 -0.01 0.35 16 7 C -0.10 -0.91 3.65 -88.45 -0.32 -1.24 16 8 H 0.10 0.91 7.90 -51.93 -0.41 0.50 16 9 C 0.11 1.17 6.37 -3.26 -0.02 1.15 16 10 N -0.62 -9.11 3.32 -171.45 -0.57 -9.68 16 11 C 0.55 10.78 7.90 -10.98 -0.09 10.69 16 12 O -0.51 -12.06 16.09 5.55 0.09 -11.97 16 13 C -0.15 -3.04 5.13 36.01 0.18 -2.86 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.53 -15.29 9.50 30.94 0.29 -14.99 16 16 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 19 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.12 1.38 6.26 -3.11 -0.02 1.37 16 24 C -0.07 -0.64 1.14 -150.84 -0.17 -0.81 16 25 C -0.13 -1.11 8.68 37.16 0.32 -0.79 16 26 C 0.04 0.33 5.73 -0.89 -0.01 0.33 16 27 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 31 H 0.10 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.05 0.44 6.83 -51.93 -0.35 0.08 16 34 H 0.08 0.90 7.32 -51.93 -0.38 0.52 16 35 H 0.07 0.69 7.11 -51.93 -0.37 0.32 16 36 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 37 H 0.09 1.71 7.87 -51.92 -0.41 1.30 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.06 0.72 7.16 -51.93 -0.37 0.35 16 40 H 0.08 1.11 7.65 -51.93 -0.40 0.71 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.61 7.95 -51.93 -0.41 0.19 16 45 H 0.05 0.40 7.10 -51.93 -0.37 0.03 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -34.93 381.72 -10.32 -45.25 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -7.23 Total: -3.02 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.62 Total: -7.85 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -1.08 Total: -40.73 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.93 -10.32 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101136191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.652 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds