Wall clock time and date at job start Tue Mar 31 2020 14:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47191 * 1 3 3 C 1.17406 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 219.75747 * 3 2 1 5 5 N 1.46895 * 109.46953 * 163.01831 * 4 3 2 6 6 C 1.48520 * 111.00341 * 290.12572 * 5 4 3 7 7 C 1.54306 * 104.69517 * 200.77414 * 6 5 4 8 8 H 1.08996 * 112.04783 * 260.94931 * 7 6 5 9 9 C 1.53759 * 109.08306 * 136.29988 * 7 6 5 10 10 N 1.47205 * 106.40331 * 228.02801 * 9 7 6 11 11 C 1.34777 * 126.70388 * 211.29068 * 10 9 7 12 12 O 1.21283 * 120.00463 * 180.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 359.74393 * 11 10 9 14 14 S 1.80997 * 109.47151 * 180.27780 * 13 11 10 15 15 C 1.76196 * 100.00314 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00626 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99674 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00584 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47012 * 89.99727 * 19 17 15 21 21 H 1.48501 * 109.47302 * 209.99797 * 19 17 15 22 22 H 1.48501 * 109.46788 * 330.00118 * 19 17 15 23 23 C 1.47205 * 106.59656 * 31.54574 * 10 9 7 24 24 C 1.54039 * 106.25966 * 328.37772 * 23 10 9 25 25 C 1.53004 * 113.03201 * 256.35338 * 24 23 10 26 26 C 1.48524 * 110.99915 * 174.72111 * 5 4 3 27 27 H 1.09007 * 109.47005 * 157.22616 * 1 2 3 28 28 H 1.09002 * 109.47136 * 277.21937 * 1 2 3 29 29 H 1.08998 * 109.47578 * 37.22070 * 1 2 3 30 30 H 1.08996 * 109.46678 * 43.01776 * 4 3 2 31 31 H 1.09002 * 109.46481 * 283.01775 * 4 3 2 32 32 H 1.09003 * 110.39529 * 81.96869 * 6 5 4 33 33 H 1.09004 * 110.48892 * 319.62428 * 6 5 4 34 34 H 1.08998 * 110.07221 * 108.79191 * 9 7 6 35 35 H 1.08997 * 110.11836 * 347.28114 * 9 7 6 36 36 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 37 37 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 38 38 H 0.97003 * 120.00297 * 179.97438 * 18 17 15 39 39 H 1.09004 * 110.06847 * 87.69121 * 23 10 9 40 40 H 1.08996 * 110.07142 * 209.21819 * 23 10 9 41 41 H 1.09000 * 109.46901 * 178.78817 * 25 24 23 42 42 H 1.08996 * 109.46969 * 298.78926 * 25 24 23 43 43 H 1.09000 * 109.46669 * 58.79034 * 25 24 23 44 44 H 1.08999 * 110.39907 * 278.03490 * 26 5 4 45 45 H 1.09002 * 110.39454 * 40.31244 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 0.0004 5 7 4.6067 1.3266 -0.4039 6 6 4.3345 1.5783 -1.8421 7 6 5.3271 2.6909 -2.2395 8 1 4.8583 3.6748 -2.2446 9 6 5.9536 2.3432 -3.6000 10 7 7.4061 2.5279 -3.4481 11 6 8.2736 2.9126 -4.4052 12 8 9.4527 3.0261 -4.1448 13 6 7.7795 3.1955 -5.8004 14 16 9.1742 3.6782 -6.8482 15 6 8.3339 3.9410 -8.3744 16 1 7.2657 3.7932 -8.4352 17 6 9.0443 4.3390 -9.4984 18 7 10.3460 4.5206 -9.4240 19 14 8.1534 4.6182 -11.1162 20 1 7.7115 6.0335 -11.2001 21 1 9.0708 4.3184 -12.2448 22 1 6.9694 3.7248 -11.1899 23 6 7.7270 2.2044 -2.0484 24 6 6.4915 2.6032 -1.2194 25 6 6.6840 3.9113 -0.4495 26 6 6.0857 1.4049 -0.2937 27 1 -0.3633 -0.9476 -0.3978 28 1 -0.3633 0.1291 1.0195 29 1 -0.3634 0.8183 -0.6216 30 1 4.4820 -0.7494 -0.7006 31 1 4.4811 -0.2295 1.0018 32 1 3.3080 1.9178 -1.9808 33 1 4.5185 0.6780 -2.4285 34 1 5.5700 3.0121 -4.3704 35 1 5.7335 1.3080 -3.8605 36 1 7.3113 2.2997 -6.2088 37 1 7.0503 4.0051 -5.7705 38 1 10.8426 4.7984 -10.2096 39 1 7.9203 1.1365 -1.9461 40 1 8.5965 2.7752 -1.7224 41 1 5.7715 4.1486 0.0974 42 1 7.5103 3.8014 0.2528 43 1 6.9072 4.7158 -1.1503 44 1 6.3795 1.6136 0.7350 45 1 6.5419 0.4764 -0.6371 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101136191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:47 Heat of formation + Delta-G solvation = 0.724527 kcal Electronic energy + Delta-G solvation = -24350.445502 eV Core-core repulsion = 20880.428108 eV Total energy + Delta-G solvation = -3470.017394 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81307 -39.95898 -37.38024 -35.11303 -34.60026 -33.74644 -32.20068 -31.10429 -29.95240 -27.83146 -27.48957 -27.13603 -26.66916 -23.93372 -22.30513 -20.75425 -20.32310 -19.47497 -18.15057 -17.65136 -17.21941 -16.89906 -16.68780 -16.49955 -16.09983 -15.86280 -15.50535 -15.33045 -14.77492 -14.59168 -14.50679 -14.29463 -14.21407 -14.04286 -13.74824 -13.55925 -13.51848 -13.18195 -13.08454 -12.95267 -12.89701 -12.63599 -12.62440 -12.31049 -11.85045 -11.75559 -11.73033 -11.58877 -11.15612 -11.01492 -10.80327 -10.62392 -10.30749 -9.81526 -9.51252 -8.69989 -8.36014 -6.14980 1.21371 1.41862 1.43294 1.50326 1.54951 1.65858 1.80088 2.04629 2.25703 2.98040 3.02826 3.11383 3.22903 3.38251 3.46466 3.70328 3.85185 3.97511 4.06044 4.10269 4.18253 4.22776 4.38030 4.40789 4.46787 4.58587 4.61862 4.65390 4.71764 4.74407 4.80544 4.83418 4.84241 4.86325 4.95173 5.04557 5.09849 5.10979 5.12840 5.30077 5.36002 5.40157 5.73793 5.91637 6.18291 6.35313 6.74047 7.04878 7.06116 8.73256 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.002477 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.180173 B =11299.751276 C =12493.696426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.194 4.194 3 C -0.210 4.210 4 C 0.158 3.842 5 N -0.513 5.513 6 C 0.048 3.952 7 C -0.091 4.091 8 H 0.102 0.898 9 C 0.099 3.901 10 N -0.615 5.615 11 C 0.550 3.450 12 O -0.565 6.565 13 C -0.120 4.120 14 S -0.149 6.149 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.258 1.258 23 C 0.111 3.889 24 C -0.063 4.063 25 C -0.122 4.122 26 C 0.049 3.951 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.272 0.728 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.100 0.900 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.138 -9.199 21.503 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.195 4.195 3 C -0.210 4.210 4 C 0.031 3.969 5 N -0.237 5.237 6 C -0.080 4.080 7 C -0.111 4.111 8 H 0.120 0.880 9 C -0.024 4.024 10 N -0.349 5.349 11 C 0.339 3.661 12 O -0.443 6.443 13 C -0.271 4.271 14 S 0.078 5.922 15 C -0.693 4.693 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.182 1.182 23 C -0.011 4.011 24 C -0.065 4.065 25 C -0.179 4.179 26 C -0.078 4.078 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.118 0.882 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.445 -8.598 22.096 30.040 hybrid contribution -0.862 -0.462 -1.893 2.131 sum -19.308 -9.060 20.203 29.377 Atomic orbital electron populations 1.19061 0.82717 1.04070 1.04128 1.23297 0.95153 0.99852 1.01187 1.22481 0.94076 1.02428 1.02046 1.19167 0.84444 0.90306 1.02943 1.65390 1.11888 1.27611 1.18793 1.23188 0.99479 0.96968 0.88376 1.22733 0.95124 1.00576 0.92662 0.88000 1.22499 0.78487 1.02617 0.98790 1.48464 1.08967 1.67109 1.10402 1.19750 0.84988 0.75647 0.85748 1.90690 1.18114 1.53347 1.82190 1.23304 1.03628 1.05615 0.94579 1.85582 1.11927 1.88703 1.05981 1.23178 0.96757 1.53704 0.95709 0.89934 1.26151 0.95774 0.94037 1.03242 1.70185 1.08163 1.44710 1.31652 0.84934 0.78076 0.79054 0.75796 1.19250 1.20243 1.18162 1.22325 0.98247 1.00748 0.79806 1.22432 0.92678 0.96770 0.94584 1.21596 1.02815 0.94060 0.99436 1.23684 0.86944 0.96214 1.00984 0.89011 0.89016 0.89192 0.91390 0.87136 0.89993 0.92568 0.89643 0.89756 0.87609 0.87583 0.91950 0.90323 0.91539 0.90748 0.91355 0.93730 0.88177 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.38 10.32 70.17 0.72 0.34 16 2 C -0.19 -3.17 14.13 31.12 0.44 -2.73 16 3 C -0.21 -3.64 13.07 31.13 0.41 -3.23 16 4 C 0.16 2.10 5.31 84.50 0.45 2.55 16 5 N -0.51 -7.46 5.35 -887.85 -4.75 -12.20 16 6 C 0.05 0.70 5.50 86.43 0.48 1.18 16 7 C -0.09 -1.49 3.65 -9.39 -0.03 -1.53 16 8 H 0.10 1.66 7.90 -2.39 -0.02 1.64 16 9 C 0.10 1.98 6.37 86.50 0.55 2.53 16 10 N -0.62 -17.38 3.32 -814.73 -2.70 -20.08 16 11 C 0.55 21.64 7.90 87.66 0.69 22.33 16 12 O -0.56 -27.41 16.09 -3.04 -0.05 -27.46 16 13 C -0.12 -4.96 5.13 71.24 0.37 -4.60 16 14 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 15 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 16 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 17 C 0.01 0.73 5.49 84.86 0.47 1.20 16 18 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 19 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 C 0.11 2.55 6.26 86.60 0.54 3.09 16 24 C -0.06 -1.05 1.14 -49.81 -0.06 -1.11 16 25 C -0.12 -1.99 8.68 71.98 0.62 -1.36 16 26 C 0.05 0.63 5.73 87.31 0.50 1.13 16 27 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.79 7.88 -2.39 -0.02 0.77 16 31 H 0.11 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 33 H 0.06 0.79 6.83 -2.39 -0.02 0.77 16 34 H 0.09 1.69 7.32 -2.39 -0.02 1.67 16 35 H 0.08 1.48 7.11 -2.39 -0.02 1.46 16 36 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 37 H 0.11 3.99 7.87 -2.40 -0.02 3.97 16 38 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.08 1.61 7.16 -2.38 -0.02 1.60 16 40 H 0.07 1.77 7.65 -2.39 -0.02 1.75 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 1.08 7.95 -2.39 -0.02 1.06 16 45 H 0.06 0.72 7.10 -2.39 -0.02 0.71 16 Total: -1.00 -77.89 381.72 1.42 -76.47 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.97 Total: 14.06 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 6.79 Total: -10.96 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -7.16 Total: -88.23 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -77.89 1.42 -76.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101136191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.193 kcal (2) G-P(sol) polarization free energy of solvation -77.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds