Wall clock time and date at job start Tue Mar 31 2020 13:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47144 * 2 1 4 4 C 1.33814 * 124.52561 * 90.00193 * 3 2 1 5 5 C 1.37471 * 115.10417 * 179.72634 * 4 3 2 6 6 C 1.36644 * 113.29716 * 0.45281 * 5 4 3 7 7 C 1.46579 * 125.45827 * 179.83694 * 6 5 4 8 8 O 1.21704 * 120.00205 * 6.50351 * 7 6 5 9 9 N 1.34779 * 120.00129 * 186.50000 * 7 6 5 10 10 C 1.48122 * 127.03664 * 176.11656 * 9 7 6 11 11 C 1.54590 * 103.42187 * 219.28671 * 10 9 7 12 12 H 1.09000 * 110.57484 * 81.17201 * 11 10 9 13 13 C 1.53005 * 110.98879 * 204.37104 * 11 10 9 14 14 N 1.46502 * 109.47209 * 288.65547 * 13 11 10 15 15 C 1.36933 * 119.99728 * 179.97438 * 14 13 11 16 16 H 1.07993 * 120.00440 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99701 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99972 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47302 * 59.99847 * 19 17 15 21 21 H 1.48501 * 109.47163 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47340 * 299.99597 * 19 17 15 23 23 C 1.54622 * 102.91462 * 322.86574 * 11 10 9 24 24 H 1.08991 * 110.41143 * 262.76374 * 23 11 10 25 25 C 1.52998 * 110.32585 * 140.59184 * 23 11 10 26 26 C 1.47488 * 127.03325 * 356.43375 * 9 7 6 27 27 S 1.70623 * 124.52234 * 269.97475 * 3 2 1 28 28 H 1.09008 * 109.47142 * 59.99690 * 1 2 3 29 29 H 1.08995 * 109.47510 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47210 * 300.00315 * 1 2 3 31 31 H 1.09004 * 109.46617 * 240.00146 * 2 1 3 32 32 H 1.08993 * 109.47028 * 119.99863 * 2 1 3 33 33 H 1.08007 * 122.44477 * 359.97438 * 4 3 2 34 34 H 1.08007 * 123.35183 * 180.26657 * 5 4 3 35 35 H 1.08996 * 110.65903 * 337.77045 * 10 9 7 36 36 H 1.08997 * 110.66054 * 100.88349 * 10 9 7 37 37 H 1.09000 * 109.46567 * 48.65360 * 13 11 10 38 38 H 1.08998 * 109.47156 * 168.65035 * 13 11 10 39 39 H 0.97001 * 119.99425 * 359.97438 * 14 13 11 40 40 H 0.96997 * 120.00308 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47382 * 302.92755 * 25 23 11 42 42 H 1.09004 * 109.47262 * 62.92635 * 25 23 11 43 43 H 1.08999 * 109.47028 * 182.92549 * 25 23 11 44 44 H 1.09002 * 109.91177 * 273.88168 * 26 9 7 45 45 H 1.09003 * 109.91385 * 34.96114 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7428 3.4124 0.8774 6 6 2.8473 3.7231 -0.4491 7 6 3.3025 5.0079 -0.9883 8 8 3.7374 5.8626 -0.2389 9 7 3.2397 5.2427 -2.3140 10 6 3.5791 6.5032 -3.0138 11 6 2.4919 6.6104 -4.1075 12 1 1.5691 7.0151 -3.6919 13 6 2.9765 7.4657 -5.2800 14 7 3.0377 8.8701 -4.8675 15 6 3.4477 9.8275 -5.7565 16 1 3.7262 9.5474 -6.7616 17 6 3.5063 11.1582 -5.3655 18 7 3.1673 11.4996 -4.1404 19 14 4.0648 12.4644 -6.5784 20 1 3.1524 12.4746 -7.7499 21 1 4.0388 13.7951 -5.9197 22 1 5.4468 12.1621 -7.0299 23 6 2.2967 5.1406 -4.5460 24 1 2.8792 4.9309 -5.4429 25 6 0.8150 4.8530 -4.7963 26 6 2.8127 4.2991 -3.3640 27 16 2.3552 2.3322 -1.4058 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.1440 1.7376 2.0964 34 1 2.9920 4.1023 1.6703 35 1 3.5208 7.3503 -2.3303 36 1 4.5697 6.4384 -3.4640 37 1 3.9683 7.1334 -5.5865 38 1 2.2843 7.3623 -6.1156 39 1 2.7879 9.1217 -3.9646 40 1 3.2079 12.4294 -3.8672 41 1 0.2438 5.0785 -3.8957 42 1 0.4580 5.4741 -5.6179 43 1 0.6874 3.8015 -5.0537 44 1 3.6590 3.6907 -3.6828 45 1 2.0166 3.6579 -2.9855 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106387418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:17 Heat of formation + Delta-G solvation = -0.301486 kcal Electronic energy + Delta-G solvation = -24690.838177 eV Core-core repulsion = 21220.776292 eV Total energy + Delta-G solvation = -3470.061885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.13250 -38.58517 -37.49090 -34.68014 -34.04204 -32.85397 -31.44854 -29.78436 -28.55904 -26.65847 -25.93441 -24.78082 -23.21852 -22.59232 -21.40024 -20.86601 -19.97570 -18.53036 -18.05963 -16.99075 -16.27651 -15.91559 -15.88335 -14.97325 -14.71814 -14.47360 -14.32474 -14.16488 -13.80762 -13.58434 -13.32970 -13.21228 -13.00272 -12.95078 -12.59534 -12.41663 -12.25951 -12.06052 -11.93978 -11.83675 -11.52683 -11.38605 -11.14059 -10.84556 -10.79715 -10.56245 -10.46333 -10.36114 -10.04244 -9.94928 -9.65360 -8.95395 -8.86053 -8.77938 -8.54456 -6.91534 -5.73832 -3.03515 0.34901 1.27094 1.70228 2.23332 2.91903 3.19975 3.45818 3.49949 3.51472 4.31441 4.39748 4.49212 4.60493 4.62585 4.81360 4.85443 4.87859 5.03236 5.17567 5.23038 5.32613 5.35633 5.42469 5.48338 5.50136 5.53511 5.58956 5.72118 5.76232 5.76747 5.81059 5.92716 5.96785 6.05427 6.12422 6.17098 6.18194 6.19443 6.39353 6.46331 6.70629 6.83109 7.52533 7.70819 8.13408 8.44202 9.55315 10.12324 10.46592 11.48712 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.002647 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.811752 B =10575.566924 C =11293.306028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.214 4.214 4 C -0.153 4.153 5 C -0.054 4.054 6 C -0.260 4.260 7 C 0.604 3.396 8 O -0.527 6.527 9 N -0.618 5.618 10 C 0.117 3.883 11 C -0.102 4.102 12 H 0.085 0.915 13 C 0.166 3.834 14 N -0.733 5.733 15 C -0.242 4.242 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.096 4.096 24 H 0.091 0.909 25 C -0.143 4.143 26 C 0.096 3.904 27 S 0.213 5.787 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -27.099 6.139 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.332 4.332 4 C -0.184 4.184 5 C -0.087 4.087 6 C -0.380 4.380 7 C 0.392 3.608 8 O -0.405 6.405 9 N -0.351 5.351 10 C -0.004 4.004 11 C -0.122 4.122 12 H 0.103 0.897 13 C 0.038 3.962 14 N -0.377 5.377 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.116 4.116 24 H 0.110 0.890 25 C -0.201 4.201 26 C -0.028 4.028 27 S 0.482 5.518 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.935 -26.880 4.966 27.776 hybrid contribution 0.297 1.068 1.298 1.707 sum -4.637 -25.812 6.264 26.963 Atomic orbital electron populations 1.21802 0.94107 1.02095 1.02663 1.20126 0.96329 0.89591 1.03320 1.24699 1.06814 1.02126 0.99607 1.19907 1.04826 0.94154 0.99487 1.20734 0.96563 0.96273 0.95172 1.24557 1.16329 0.99151 0.97992 1.16541 0.78416 0.85333 0.80498 1.90865 1.46660 1.45930 1.57091 1.48694 1.65737 1.15940 1.04738 1.22544 0.98335 0.85683 0.93841 1.22541 0.99130 0.93939 0.96592 0.89665 1.20620 0.97279 0.85336 0.93000 1.42366 1.80778 1.00570 1.14012 1.19151 1.36973 0.87398 0.93803 0.91222 1.24757 1.02314 0.97247 0.96590 1.69651 1.54309 1.17111 1.16913 0.86266 0.78476 0.81251 0.80159 1.21297 1.21707 1.21264 1.22065 0.97585 0.94870 0.97041 0.89039 1.21857 0.94592 1.01273 1.02330 1.22445 0.99360 0.92397 0.88627 1.83311 1.60181 1.01845 1.06444 0.92337 0.91931 0.92191 0.90726 0.90049 0.84269 0.83035 0.89037 0.90416 0.96031 0.95804 0.78186 0.93402 0.92563 0.91585 0.92617 0.90851 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.05 -0.33 6.36 -27.89 -0.18 -0.51 16 3 C -0.21 -1.86 5.53 -35.86 -0.20 -2.05 16 4 C -0.15 -1.45 9.99 -41.41 -0.41 -1.86 16 5 C -0.05 -0.64 10.02 -40.44 -0.41 -1.05 16 6 C -0.26 -3.41 6.38 -36.80 -0.23 -3.64 16 7 C 0.60 9.91 7.85 -12.90 -0.10 9.81 16 8 O -0.53 -10.67 17.08 5.19 0.09 -10.58 16 9 N -0.62 -9.22 3.29 -171.55 -0.57 -9.79 16 10 C 0.12 1.96 6.43 -2.31 -0.01 1.95 16 11 C -0.10 -1.61 2.60 -88.93 -0.23 -1.84 16 12 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 13 C 0.17 3.17 5.59 -4.04 -0.02 3.15 16 14 N -0.73 -18.39 5.52 -59.91 -0.33 -18.72 16 15 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 19 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C -0.10 -1.11 3.17 -89.25 -0.28 -1.40 16 24 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 25 C -0.14 -1.45 8.90 37.16 0.33 -1.12 16 26 C 0.10 1.09 5.43 -2.98 -0.02 1.07 16 27 S 0.21 2.02 18.63 -107.50 -2.00 0.02 16 28 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.09 1.79 7.88 -51.93 -0.41 1.38 16 36 H 0.08 1.29 7.94 -51.93 -0.41 0.88 16 37 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.38 10.29 7.67 -40.82 -0.31 9.97 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.75 4.44 -28.99 -0.13 0.62 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -33.29 377.41 -10.18 -43.47 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.11 Total: 5.56 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.65 Total: -5.33 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.17 Total: -56.36 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.00 Total: 0.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.29 -10.18 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106387418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.171 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds