Wall clock time and date at job start Tue Mar 31 2020 13:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47144 * 2 1 4 4 C 1.33814 * 124.52561 * 90.00193 * 3 2 1 5 5 C 1.37471 * 115.10417 * 179.72634 * 4 3 2 6 6 C 1.36644 * 113.29716 * 0.45281 * 5 4 3 7 7 C 1.46579 * 125.45827 * 179.83694 * 6 5 4 8 8 O 1.21704 * 120.00205 * 6.50351 * 7 6 5 9 9 N 1.34779 * 120.00129 * 186.50000 * 7 6 5 10 10 C 1.48122 * 127.03664 * 176.11656 * 9 7 6 11 11 C 1.54590 * 103.42187 * 219.28671 * 10 9 7 12 12 H 1.09000 * 110.57484 * 81.17201 * 11 10 9 13 13 C 1.53005 * 110.98879 * 204.37104 * 11 10 9 14 14 N 1.46502 * 109.47209 * 288.65547 * 13 11 10 15 15 C 1.36933 * 119.99728 * 179.97438 * 14 13 11 16 16 H 1.07993 * 120.00440 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99701 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99972 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47302 * 59.99847 * 19 17 15 21 21 H 1.48501 * 109.47163 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47340 * 299.99597 * 19 17 15 23 23 C 1.54622 * 102.91462 * 322.86574 * 11 10 9 24 24 H 1.08991 * 110.41143 * 262.76374 * 23 11 10 25 25 C 1.52998 * 110.32585 * 140.59184 * 23 11 10 26 26 C 1.47488 * 127.03325 * 356.43375 * 9 7 6 27 27 S 1.70623 * 124.52234 * 269.97475 * 3 2 1 28 28 H 1.09008 * 109.47142 * 59.99690 * 1 2 3 29 29 H 1.08995 * 109.47510 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47210 * 300.00315 * 1 2 3 31 31 H 1.09004 * 109.46617 * 240.00146 * 2 1 3 32 32 H 1.08993 * 109.47028 * 119.99863 * 2 1 3 33 33 H 1.08007 * 122.44477 * 359.97438 * 4 3 2 34 34 H 1.08007 * 123.35183 * 180.26657 * 5 4 3 35 35 H 1.08996 * 110.65903 * 337.77045 * 10 9 7 36 36 H 1.08997 * 110.66054 * 100.88349 * 10 9 7 37 37 H 1.09000 * 109.46567 * 48.65360 * 13 11 10 38 38 H 1.08998 * 109.47156 * 168.65035 * 13 11 10 39 39 H 0.97001 * 119.99425 * 359.97438 * 14 13 11 40 40 H 0.96997 * 120.00308 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47382 * 302.92755 * 25 23 11 42 42 H 1.09004 * 109.47262 * 62.92635 * 25 23 11 43 43 H 1.08999 * 109.47028 * 182.92549 * 25 23 11 44 44 H 1.09002 * 109.91177 * 273.88168 * 26 9 7 45 45 H 1.09003 * 109.91385 * 34.96114 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7428 3.4124 0.8774 6 6 2.8473 3.7231 -0.4491 7 6 3.3025 5.0079 -0.9883 8 8 3.7374 5.8626 -0.2389 9 7 3.2397 5.2427 -2.3140 10 6 3.5791 6.5032 -3.0138 11 6 2.4919 6.6104 -4.1075 12 1 1.5691 7.0151 -3.6919 13 6 2.9765 7.4657 -5.2800 14 7 3.0377 8.8701 -4.8675 15 6 3.4477 9.8275 -5.7565 16 1 3.7262 9.5474 -6.7616 17 6 3.5063 11.1582 -5.3655 18 7 3.1673 11.4996 -4.1404 19 14 4.0648 12.4644 -6.5784 20 1 3.1524 12.4746 -7.7499 21 1 4.0388 13.7951 -5.9197 22 1 5.4468 12.1621 -7.0299 23 6 2.2967 5.1406 -4.5460 24 1 2.8792 4.9309 -5.4429 25 6 0.8150 4.8530 -4.7963 26 6 2.8127 4.2991 -3.3640 27 16 2.3552 2.3322 -1.4058 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.1440 1.7376 2.0964 34 1 2.9920 4.1023 1.6703 35 1 3.5208 7.3503 -2.3303 36 1 4.5697 6.4384 -3.4640 37 1 3.9683 7.1334 -5.5865 38 1 2.2843 7.3623 -6.1156 39 1 2.7879 9.1217 -3.9646 40 1 3.2079 12.4294 -3.8672 41 1 0.2438 5.0785 -3.8957 42 1 0.4580 5.4741 -5.6179 43 1 0.6874 3.8015 -5.0537 44 1 3.6590 3.6907 -3.6828 45 1 2.0166 3.6579 -2.9855 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106387418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:16 Heat of formation + Delta-G solvation = -20.793261 kcal Electronic energy + Delta-G solvation = -24691.726767 eV Core-core repulsion = 21220.776292 eV Total energy + Delta-G solvation = -3470.950475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33863 -39.58103 -38.56348 -36.48410 -34.71012 -34.20473 -33.08312 -31.15276 -29.66017 -27.62994 -27.24616 -25.93245 -24.84945 -23.22817 -22.75621 -21.86598 -21.23736 -19.57659 -19.19164 -18.81610 -17.41555 -16.98546 -16.91412 -16.55350 -15.98108 -15.54486 -15.39926 -15.17493 -14.96910 -14.91797 -14.66884 -14.24780 -14.18837 -13.91659 -13.67941 -13.50794 -13.40779 -13.12593 -12.92224 -12.82398 -12.71399 -12.53833 -12.37212 -12.24280 -12.01499 -11.96082 -11.84565 -11.69080 -11.55974 -11.28420 -11.21769 -10.92231 -10.03210 -9.59514 -9.47781 -9.00040 -7.94078 -5.23730 -0.53945 0.44186 0.90225 1.34449 1.46953 1.50696 1.56739 1.74910 2.08074 2.56473 3.28978 3.39832 3.45269 3.68267 3.76257 3.78678 4.09528 4.16546 4.17551 4.31629 4.34572 4.42842 4.45764 4.47461 4.50013 4.56298 4.74832 4.76892 4.80768 4.83951 4.90278 4.96909 5.04450 5.07706 5.15055 5.18232 5.21804 5.24576 5.32895 5.36616 5.43533 5.48478 5.51809 6.27038 6.34799 6.90021 7.32990 8.09361 8.30901 9.29546 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.002647 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.811752 B =10575.566924 C =11293.306028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.198 4.198 4 C -0.165 4.165 5 C -0.055 4.055 6 C -0.306 4.306 7 C 0.596 3.404 8 O -0.586 6.586 9 N -0.618 5.618 10 C 0.119 3.881 11 C -0.092 4.092 12 H 0.067 0.933 13 C 0.166 3.834 14 N -0.749 5.749 15 C -0.243 4.243 16 H 0.081 0.919 17 C -0.081 4.081 18 N -0.974 5.974 19 Si 0.976 3.024 20 H -0.274 1.274 21 H -0.299 1.299 22 H -0.277 1.277 23 C -0.085 4.085 24 H 0.113 0.887 25 C -0.141 4.141 26 C 0.094 3.906 27 S 0.263 5.737 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -30.988 4.340 31.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.318 4.318 4 C -0.194 4.194 5 C -0.089 4.089 6 C -0.425 4.425 7 C 0.387 3.613 8 O -0.468 6.468 9 N -0.349 5.349 10 C -0.003 4.003 11 C -0.112 4.112 12 H 0.085 0.915 13 C 0.039 3.961 14 N -0.391 5.391 15 C -0.374 4.374 16 H 0.099 0.901 17 C -0.273 4.273 18 N -0.624 5.624 19 Si 0.805 3.195 20 H -0.200 1.200 21 H -0.226 1.226 22 H -0.203 1.203 23 C -0.105 4.105 24 H 0.131 0.869 25 C -0.198 4.198 26 C -0.029 4.029 27 S 0.532 5.468 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.179 0.821 34 H 0.158 0.842 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.663 -30.841 3.094 31.509 hybrid contribution 0.487 2.113 1.874 2.866 sum -5.176 -28.728 4.968 29.610 Atomic orbital electron populations 1.21815 0.93531 1.03129 1.02220 1.20303 0.96661 0.87671 1.04879 1.25167 1.04472 1.03188 0.98958 1.20040 1.05210 0.93113 1.01012 1.20899 0.96061 0.97278 0.94699 1.24343 1.19420 0.99441 0.99317 1.17111 0.77622 0.86135 0.80478 1.90812 1.49415 1.48152 1.58458 1.48733 1.65238 1.15858 1.05119 1.22331 0.98917 0.85575 0.93511 1.22349 0.97502 0.96442 0.94917 0.91455 1.20798 0.97962 0.82816 0.94494 1.42642 1.80591 1.02787 1.13121 1.19633 1.35209 0.88114 0.94472 0.90075 1.25640 1.03565 0.99688 0.98371 1.69838 1.56572 1.16958 1.19076 0.85173 0.78432 0.77897 0.78034 1.20035 1.22562 1.20269 1.22085 0.99372 0.91190 0.97839 0.86857 1.21865 0.92886 1.03311 1.01787 1.22728 1.00922 0.91967 0.87290 1.82885 1.58889 0.99309 1.05715 0.92725 0.90229 0.92754 0.89209 0.88516 0.82073 0.84178 0.93309 0.90418 0.95120 0.94636 0.79824 0.94146 0.93494 0.92027 0.89303 0.88300 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 71.98 0.71 -0.42 16 2 C -0.06 -0.46 6.36 29.85 0.19 -0.27 16 3 C -0.20 -2.85 5.53 24.68 0.14 -2.72 16 4 C -0.16 -2.81 9.99 21.08 0.21 -2.60 16 5 C -0.05 -1.31 10.02 21.72 0.22 -1.09 16 6 C -0.31 -8.03 6.38 24.07 0.15 -7.87 16 7 C 0.60 20.61 7.85 86.42 0.68 21.29 16 8 O -0.59 -25.85 17.08 -4.36 -0.07 -25.93 16 9 N -0.62 -18.84 3.29 -814.89 -2.68 -21.53 16 10 C 0.12 4.21 6.43 86.61 0.56 4.76 16 11 C -0.09 -2.92 2.60 -9.70 -0.03 -2.94 16 12 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 13 C 0.17 6.30 5.59 86.38 0.48 6.78 16 14 N -0.75 -38.53 5.52 -343.45 -1.90 -40.43 16 15 C -0.24 -13.64 9.99 84.04 0.84 -12.80 16 16 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 17 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 18 N -0.97 -61.90 13.06 21.65 0.28 -61.62 16 19 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 C -0.09 -1.78 3.17 -9.90 -0.03 -1.81 16 24 H 0.11 1.95 7.85 -2.39 -0.02 1.93 16 25 C -0.14 -2.45 8.90 71.98 0.64 -1.81 16 26 C 0.09 1.91 5.43 86.53 0.47 2.38 16 27 S 0.26 4.28 18.63 -56.49 -1.05 3.23 16 28 H 0.05 0.46 8.14 -2.38 -0.02 0.45 16 29 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.05 2.12 7.88 -2.39 -0.02 2.10 16 36 H 0.08 2.69 7.94 -2.39 -0.02 2.67 16 37 H 0.03 1.14 8.00 -2.39 -0.02 1.12 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.37 20.89 7.67 -92.71 -0.71 20.18 16 40 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16 42 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.56 4.44 -16.97 -0.08 1.48 16 Total: -1.00 -76.60 377.41 2.51 -74.09 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.21 Total: 26.60 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.70 Total: -3.41 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -4.30 Total: -123.57 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.07 Total: -25.93 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.05 Total: 3.23 kcal Total: -76.60 2.51 -74.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106387418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.301 kcal (2) G-P(sol) polarization free energy of solvation -76.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds