Wall clock time and date at job start Tue Mar 31 2020 13:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50703 * 109.47497 * 2 1 4 4 C 1.37473 * 123.35064 * 264.71065 * 3 2 1 5 5 C 1.33820 * 115.09830 * 179.76419 * 4 3 2 6 6 S 1.70614 * 110.95327 * 0.48408 * 5 4 3 7 7 C 1.36646 * 123.34966 * 84.99990 * 3 2 1 8 8 C 1.46582 * 125.46168 * 0.02562 * 7 3 2 9 9 O 1.21697 * 119.99619 * 6.34800 * 8 7 3 10 10 N 1.34769 * 120.00029 * 186.34067 * 8 7 3 11 11 C 1.48119 * 127.03191 * 185.23643 * 10 8 7 12 12 C 1.54594 * 103.42522 * 219.28924 * 11 10 8 13 13 H 1.09002 * 110.57333 * 81.17171 * 12 11 10 14 14 C 1.53000 * 110.98988 * 204.37279 * 12 11 10 15 15 N 1.46499 * 109.47379 * 288.65101 * 14 12 11 16 16 C 1.36937 * 119.99673 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00417 * 0.02562 * 16 15 14 18 18 C 1.38821 * 119.99504 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00020 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99701 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47528 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47151 * 119.99957 * 20 18 16 23 23 H 1.48503 * 109.46762 * 239.99828 * 20 18 16 24 24 C 1.54614 * 102.91264 * 322.87065 * 12 11 10 25 25 H 1.08998 * 110.32707 * 262.80593 * 24 12 11 26 26 C 1.53001 * 110.41574 * 140.63471 * 24 12 11 27 27 C 1.47488 * 127.03744 * 5.55904 * 10 8 7 28 28 H 1.09007 * 109.47258 * 300.00266 * 1 2 3 29 29 H 1.09001 * 109.47558 * 59.99832 * 1 2 3 30 30 H 1.09004 * 109.47405 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47558 * 120.00168 * 2 1 3 32 32 H 1.09007 * 109.47258 * 239.99734 * 2 1 3 33 33 H 1.07999 * 122.45030 * 359.97438 * 4 3 2 34 34 H 1.08002 * 124.52268 * 180.24531 * 5 4 3 35 35 H 1.08995 * 110.66565 * 337.77723 * 11 10 8 36 36 H 1.09002 * 110.66227 * 100.89317 * 11 10 8 37 37 H 1.09003 * 109.46981 * 48.65822 * 14 12 11 38 38 H 1.09001 * 109.47178 * 168.64910 * 14 12 11 39 39 H 0.96998 * 120.00112 * 0.02562 * 15 14 12 40 40 H 0.97002 * 120.00165 * 179.97438 * 19 18 16 41 41 H 1.09008 * 109.46644 * 302.87394 * 26 24 12 42 42 H 1.09002 * 109.47117 * 62.87005 * 26 24 12 43 43 H 1.09000 * 109.47182 * 182.87708 * 26 24 12 44 44 H 1.08997 * 109.91227 * 273.87159 * 27 10 8 45 45 H 1.08996 * 109.91126 * 35.15429 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3841 2.0980 -1.1435 5 6 2.8043 3.3542 -0.9527 6 16 2.7926 3.7562 0.7054 7 6 2.1890 2.1622 1.1371 8 6 1.9006 1.7022 2.4987 9 8 1.5961 0.5408 2.6968 10 7 1.9727 2.5655 3.5310 11 6 1.8207 2.2499 4.9702 12 6 1.0149 3.4502 5.5178 13 1 -0.0481 3.3237 5.3124 14 6 1.2568 3.6344 7.0173 15 7 0.6005 2.5517 7.7544 16 6 0.6809 2.5068 9.1207 17 1 1.2278 3.2697 9.6548 18 6 0.0594 1.4806 9.8191 19 7 -0.6067 0.5507 9.1681 20 14 0.1685 1.4197 11.6829 21 1 0.9689 2.5718 12.1699 22 1 -1.1977 1.4857 12.2611 23 1 0.8216 0.1526 12.0992 24 6 1.5884 4.6440 4.7200 25 1 2.3508 5.1588 5.3045 26 6 0.4703 5.6147 4.3344 27 6 2.2128 4.0189 3.4586 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.3225 1.6503 -2.1243 34 1 3.1134 4.0228 -1.7425 35 1 1.2651 1.3217 5.1038 36 1 2.7947 2.1896 5.4558 37 1 2.3280 3.6133 7.2178 38 1 0.8463 4.5923 7.3366 39 1 0.1096 1.8664 7.2746 40 1 -1.0406 -0.1666 9.6560 41 1 -0.2900 5.0838 3.7612 42 1 0.0214 6.0289 5.2371 43 1 0.8828 6.4225 3.7300 44 1 3.2843 4.2176 3.4373 45 1 1.7386 4.4295 2.5672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107023632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:16 Heat of formation + Delta-G solvation = 1.719399 kcal Electronic energy + Delta-G solvation = -25160.965901 eV Core-core repulsion = 21690.991648 eV Total energy + Delta-G solvation = -3469.974253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.21485 -38.83390 -37.32462 -34.67326 -32.98999 -32.73562 -31.44193 -30.06161 -28.69914 -26.60676 -25.89769 -24.79610 -23.20246 -22.47693 -21.37561 -20.66836 -19.96534 -18.32934 -18.12809 -16.99639 -16.08566 -15.95934 -15.68177 -14.97650 -14.64517 -14.32661 -14.18935 -13.89861 -13.85241 -13.57571 -13.28298 -13.13122 -12.96793 -12.89697 -12.51529 -12.38515 -12.26281 -11.98041 -11.83125 -11.55498 -11.37804 -11.13412 -10.97472 -10.86699 -10.80365 -10.54910 -10.46252 -10.35694 -9.98214 -9.76318 -9.65367 -9.02141 -8.87407 -8.73566 -8.46726 -6.91251 -5.74196 -3.03680 0.36682 1.32137 1.72707 2.22148 2.94868 3.18949 3.44954 3.50115 3.52765 4.40006 4.52610 4.60080 4.62827 4.82122 4.87949 4.99756 5.03502 5.22293 5.26397 5.36874 5.39730 5.49712 5.52022 5.57109 5.59115 5.65679 5.75229 5.78111 5.84976 5.95013 5.97431 6.06607 6.10751 6.13787 6.18018 6.19325 6.30006 6.38409 6.41812 6.48674 6.71322 6.83911 7.56294 7.71757 8.17141 8.43804 9.55191 10.12337 10.46610 11.48418 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.003049 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.009781 B = 9179.939308 C =10242.413741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C -0.021 4.021 4 C -0.146 4.146 5 C -0.248 4.248 6 S 0.206 5.794 7 C -0.263 4.263 8 C 0.605 3.395 9 O -0.521 6.521 10 N -0.619 5.619 11 C 0.117 3.883 12 C -0.102 4.102 13 H 0.085 0.915 14 C 0.166 3.834 15 N -0.733 5.733 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.096 4.096 25 H 0.090 0.910 26 C -0.143 4.143 27 C 0.094 3.906 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.069 9.146 -23.040 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.036 4.036 4 C -0.177 4.177 5 C -0.385 4.385 6 S 0.475 5.525 7 C -0.383 4.383 8 C 0.394 3.606 9 O -0.399 6.399 10 N -0.352 5.352 11 C -0.004 4.004 12 C -0.122 4.122 13 H 0.103 0.897 14 C 0.038 3.962 15 N -0.377 5.377 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.115 4.115 25 H 0.108 0.892 26 C -0.200 4.200 27 C -0.031 4.031 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.359 9.844 -22.045 25.240 hybrid contribution -0.402 -1.361 -0.191 1.432 sum 6.957 8.483 -22.236 24.795 Atomic orbital electron populations 1.21606 0.94276 1.01905 1.01681 1.20460 0.96539 0.90607 1.03811 1.19521 0.96158 0.97493 0.90438 1.19892 1.04010 0.94236 0.99538 1.25529 1.08114 1.01290 1.03542 1.83299 1.60283 1.11560 0.97331 1.24423 1.16873 0.99520 0.97443 1.16479 0.77484 0.84784 0.81897 1.90818 1.48256 1.16902 1.83955 1.48685 1.71054 1.08050 1.07413 1.22531 1.00693 0.99876 0.77315 1.22524 1.00284 0.92942 0.96419 0.89713 1.20619 0.95883 0.92556 0.87187 1.42382 1.62997 1.28461 1.03897 1.19246 1.27420 1.07656 0.82880 0.91132 1.24755 1.00606 0.97668 0.97903 1.69673 1.38945 1.15069 1.34208 0.86132 0.77162 0.77264 0.85700 1.20575 1.21894 1.21875 1.22059 0.98450 0.96410 0.94613 0.89164 1.21851 0.97867 0.98424 1.01857 1.22392 1.00616 0.80811 0.99273 0.92276 0.93309 0.92198 0.88351 0.91379 0.84165 0.81773 0.88990 0.90517 0.96069 0.95841 0.78181 0.93521 0.92593 0.91645 0.92641 0.91069 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.84 37.15 0.37 -1.20 16 2 C -0.07 -0.88 5.54 -27.89 -0.15 -1.03 16 3 C -0.02 -0.25 5.16 -105.47 -0.54 -0.79 16 4 C -0.15 -1.38 9.96 -41.41 -0.41 -1.79 16 5 C -0.25 -2.07 10.92 29.18 0.32 -1.75 16 6 S 0.21 1.92 18.86 -107.50 -2.03 -0.11 16 7 C -0.26 -3.39 6.35 -36.79 -0.23 -3.63 16 8 C 0.60 9.59 7.83 -12.90 -0.10 9.49 16 9 O -0.52 -9.85 14.25 5.19 0.07 -9.78 16 10 N -0.62 -9.06 3.29 -171.56 -0.57 -9.62 16 11 C 0.12 1.93 6.47 -2.31 -0.01 1.92 16 12 C -0.10 -1.60 2.60 -88.93 -0.23 -1.83 16 13 H 0.08 1.44 7.86 -51.93 -0.41 1.04 16 14 C 0.17 3.17 5.58 -4.04 -0.02 3.15 16 15 N -0.73 -18.35 5.52 -59.91 -0.33 -18.68 16 16 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 C -0.10 -1.12 3.17 -89.25 -0.28 -1.40 16 25 H 0.09 0.96 7.85 -51.93 -0.41 0.56 16 26 C -0.14 -1.47 8.90 37.16 0.33 -1.14 16 27 C 0.09 1.05 5.05 -2.98 -0.02 1.03 16 28 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.39 6.19 -51.93 -0.32 1.07 16 32 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.09 1.78 7.81 -51.93 -0.41 1.38 16 36 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 37 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 40 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.69 8.04 -51.93 -0.42 0.28 16 45 H 0.08 0.77 5.27 -40.13 -0.21 0.56 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -32.50 372.50 -9.85 -42.35 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.07 Total: 6.78 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.24 Total: -6.31 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.17 Total: -56.03 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.03 Total: -0.11 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.50 -9.85 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107023632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.067 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds