Wall clock time and date at job start Tue Mar 31 2020 13:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50703 * 109.47497 * 2 1 4 4 C 1.37473 * 123.35064 * 264.71065 * 3 2 1 5 5 C 1.33820 * 115.09830 * 179.76419 * 4 3 2 6 6 S 1.70614 * 110.95327 * 0.48408 * 5 4 3 7 7 C 1.36646 * 123.34966 * 84.99990 * 3 2 1 8 8 C 1.46582 * 125.46168 * 0.02562 * 7 3 2 9 9 O 1.21697 * 119.99619 * 6.34800 * 8 7 3 10 10 N 1.34769 * 120.00029 * 186.34067 * 8 7 3 11 11 C 1.48119 * 127.03191 * 185.23643 * 10 8 7 12 12 C 1.54594 * 103.42522 * 219.28924 * 11 10 8 13 13 H 1.09002 * 110.57333 * 81.17171 * 12 11 10 14 14 C 1.53000 * 110.98988 * 204.37279 * 12 11 10 15 15 N 1.46499 * 109.47379 * 288.65101 * 14 12 11 16 16 C 1.36937 * 119.99673 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00417 * 0.02562 * 16 15 14 18 18 C 1.38821 * 119.99504 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00020 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99701 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47528 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47151 * 119.99957 * 20 18 16 23 23 H 1.48503 * 109.46762 * 239.99828 * 20 18 16 24 24 C 1.54614 * 102.91264 * 322.87065 * 12 11 10 25 25 H 1.08998 * 110.32707 * 262.80593 * 24 12 11 26 26 C 1.53001 * 110.41574 * 140.63471 * 24 12 11 27 27 C 1.47488 * 127.03744 * 5.55904 * 10 8 7 28 28 H 1.09007 * 109.47258 * 300.00266 * 1 2 3 29 29 H 1.09001 * 109.47558 * 59.99832 * 1 2 3 30 30 H 1.09004 * 109.47405 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47558 * 120.00168 * 2 1 3 32 32 H 1.09007 * 109.47258 * 239.99734 * 2 1 3 33 33 H 1.07999 * 122.45030 * 359.97438 * 4 3 2 34 34 H 1.08002 * 124.52268 * 180.24531 * 5 4 3 35 35 H 1.08995 * 110.66565 * 337.77723 * 11 10 8 36 36 H 1.09002 * 110.66227 * 100.89317 * 11 10 8 37 37 H 1.09003 * 109.46981 * 48.65822 * 14 12 11 38 38 H 1.09001 * 109.47178 * 168.64910 * 14 12 11 39 39 H 0.96998 * 120.00112 * 0.02562 * 15 14 12 40 40 H 0.97002 * 120.00165 * 179.97438 * 19 18 16 41 41 H 1.09008 * 109.46644 * 302.87394 * 26 24 12 42 42 H 1.09002 * 109.47117 * 62.87005 * 26 24 12 43 43 H 1.09000 * 109.47182 * 182.87708 * 26 24 12 44 44 H 1.08997 * 109.91227 * 273.87159 * 27 10 8 45 45 H 1.08996 * 109.91126 * 35.15429 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3841 2.0980 -1.1435 5 6 2.8043 3.3542 -0.9527 6 16 2.7926 3.7562 0.7054 7 6 2.1890 2.1622 1.1371 8 6 1.9006 1.7022 2.4987 9 8 1.5961 0.5408 2.6968 10 7 1.9727 2.5655 3.5310 11 6 1.8207 2.2499 4.9702 12 6 1.0149 3.4502 5.5178 13 1 -0.0481 3.3237 5.3124 14 6 1.2568 3.6344 7.0173 15 7 0.6005 2.5517 7.7544 16 6 0.6809 2.5068 9.1207 17 1 1.2278 3.2697 9.6548 18 6 0.0594 1.4806 9.8191 19 7 -0.6067 0.5507 9.1681 20 14 0.1685 1.4197 11.6829 21 1 0.9689 2.5718 12.1699 22 1 -1.1977 1.4857 12.2611 23 1 0.8216 0.1526 12.0992 24 6 1.5884 4.6440 4.7200 25 1 2.3508 5.1588 5.3045 26 6 0.4703 5.6147 4.3344 27 6 2.2128 4.0189 3.4586 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.3225 1.6503 -2.1243 34 1 3.1134 4.0228 -1.7425 35 1 1.2651 1.3217 5.1038 36 1 2.7947 2.1896 5.4558 37 1 2.3280 3.6133 7.2178 38 1 0.8463 4.5923 7.3366 39 1 0.1096 1.8664 7.2746 40 1 -1.0406 -0.1666 9.6560 41 1 -0.2900 5.0838 3.7612 42 1 0.0214 6.0289 5.2371 43 1 0.8828 6.4225 3.7300 44 1 3.2843 4.2176 3.4373 45 1 1.7386 4.4295 2.5672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107023632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:16 Heat of formation + Delta-G solvation = -18.206438 kcal Electronic energy + Delta-G solvation = -25161.829950 eV Core-core repulsion = 21690.991648 eV Total energy + Delta-G solvation = -3470.838302 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35715 -39.81602 -38.42631 -36.47134 -34.28235 -33.69614 -33.05944 -31.34299 -29.97635 -27.59154 -27.23504 -26.02255 -24.88064 -23.32820 -22.72572 -21.68138 -21.21345 -19.40761 -19.17490 -18.81912 -17.25467 -17.07009 -16.65922 -16.53521 -15.99124 -15.50678 -15.30143 -15.16220 -14.95141 -14.91048 -14.72859 -14.34091 -14.08951 -13.90288 -13.66434 -13.42960 -13.37710 -13.21731 -12.94772 -12.81231 -12.75982 -12.48195 -12.39847 -12.15530 -11.96398 -11.95384 -11.81597 -11.65929 -11.54330 -11.35869 -10.96968 -10.92105 -9.99854 -9.67141 -9.30702 -9.00061 -7.94388 -5.23968 -0.47497 0.52735 0.99002 1.39945 1.47013 1.48351 1.58400 1.81827 2.10825 2.56084 3.32701 3.40213 3.49212 3.73409 3.80348 3.88985 4.12390 4.13998 4.20145 4.30905 4.34344 4.44212 4.48606 4.50316 4.50776 4.57828 4.74055 4.76128 4.79109 4.83994 4.86380 4.99197 5.04844 5.08602 5.10857 5.18611 5.24511 5.27026 5.32834 5.42364 5.49075 5.51857 5.52825 6.26940 6.43079 7.00093 7.32882 8.09076 8.30744 9.29531 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.003049 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.009781 B = 9179.939308 C =10242.413741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.024 4.024 4 C -0.159 4.159 5 C -0.228 4.228 6 S 0.251 5.749 7 C -0.309 4.309 8 C 0.595 3.405 9 O -0.571 6.571 10 N -0.620 5.620 11 C 0.121 3.879 12 C -0.092 4.092 13 H 0.064 0.936 14 C 0.166 3.834 15 N -0.749 5.749 16 C -0.241 4.241 17 H 0.081 0.919 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.296 1.296 24 C -0.086 4.086 25 H 0.111 0.889 26 C -0.140 4.140 27 C 0.092 3.908 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.165 0.835 34 H 0.201 0.799 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.776 12.478 -25.159 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 C -0.040 4.040 4 C -0.189 4.189 5 C -0.365 4.365 6 S 0.521 5.479 7 C -0.428 4.428 8 C 0.386 3.614 9 O -0.453 6.453 10 N -0.353 5.353 11 C -0.002 4.002 12 C -0.112 4.112 13 H 0.083 0.917 14 C 0.039 3.961 15 N -0.391 5.391 16 C -0.373 4.373 17 H 0.099 0.901 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.804 3.196 21 H -0.185 1.185 22 H -0.222 1.222 23 H -0.224 1.224 24 C -0.105 4.105 25 H 0.129 0.871 26 C -0.197 4.197 27 C -0.031 4.031 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.183 0.817 34 H 0.218 0.782 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.202 0.798 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.103 13.262 -24.172 29.035 hybrid contribution -0.885 -2.334 0.363 2.522 sum 8.219 10.928 -23.809 27.456 Atomic orbital electron populations 1.21551 0.94349 1.02047 1.00962 1.20429 0.96516 0.91266 1.03370 1.19760 0.95606 0.97347 0.91281 1.20049 1.04524 0.94698 0.99588 1.26005 1.05498 1.01171 1.03835 1.82956 1.58885 1.08316 0.97784 1.24275 1.20049 1.02619 0.95877 1.17057 0.76677 0.84343 0.83290 1.90782 1.50501 1.19016 1.84959 1.48733 1.70749 1.09646 1.06160 1.22285 1.00068 0.98530 0.79308 1.22328 0.99192 0.94836 0.94852 0.91707 1.20792 0.95608 0.90966 0.88692 1.42654 1.63302 1.29603 1.03558 1.19706 1.26058 1.07214 0.84296 0.90093 1.25626 1.01191 0.97802 1.02585 1.69852 1.40678 1.15979 1.35843 0.85050 0.76956 0.77432 0.80187 1.18548 1.22151 1.22353 1.22076 0.99296 0.94903 0.94235 0.87082 1.21851 0.97110 0.98735 1.02043 1.22645 1.02298 0.78380 0.99739 0.95524 0.91230 0.91725 0.91708 0.88762 0.81730 0.78190 0.93317 0.90529 0.95148 0.94800 0.79815 0.94161 0.93620 0.92166 0.89363 0.88611 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.84 71.98 0.71 -2.41 16 2 C -0.08 -1.84 5.54 29.85 0.17 -1.67 16 3 C -0.02 -0.54 5.16 -20.42 -0.11 -0.65 16 4 C -0.16 -2.49 9.96 21.08 0.21 -2.28 16 5 C -0.23 -2.80 10.92 66.82 0.73 -2.07 16 6 S 0.25 3.85 18.86 -56.49 -1.07 2.79 16 7 C -0.31 -7.86 6.35 24.08 0.15 -7.71 16 8 C 0.60 19.93 7.83 86.42 0.68 20.61 16 9 O -0.57 -23.79 14.25 -4.34 -0.06 -23.85 16 10 N -0.62 -18.66 3.29 -814.91 -2.68 -21.35 16 11 C 0.12 4.23 6.47 86.61 0.56 4.79 16 12 C -0.09 -2.95 2.60 -9.70 -0.03 -2.97 16 13 H 0.06 2.33 7.86 -2.39 -0.02 2.31 16 14 C 0.17 6.35 5.58 86.38 0.48 6.83 16 15 N -0.75 -38.62 5.52 -343.44 -1.90 -40.52 16 16 C -0.24 -13.57 9.99 84.04 0.84 -12.73 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 19 N -0.97 -61.76 13.06 21.65 0.28 -61.48 16 20 Si 0.97 46.99 29.55 68.60 2.03 49.01 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 24 C -0.09 -1.82 3.17 -9.90 -0.03 -1.85 16 25 H 0.11 1.97 7.85 -2.39 -0.02 1.95 16 26 C -0.14 -2.52 8.90 71.98 0.64 -1.88 16 27 C 0.09 1.88 5.05 86.53 0.44 2.32 16 28 H 0.03 0.78 7.91 -2.38 -0.02 0.76 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 2.01 6.19 -2.39 -0.01 1.99 16 32 H 0.09 1.69 8.12 -2.38 -0.02 1.67 16 33 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.05 2.11 7.81 -2.39 -0.02 2.09 16 36 H 0.08 2.64 7.95 -2.39 -0.02 2.62 16 37 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.37 20.95 7.67 -92.71 -0.71 20.24 16 40 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 1.54 8.04 -2.39 -0.02 1.52 16 45 H 0.09 1.61 5.27 -9.89 -0.05 1.56 16 Total: -1.00 -75.67 372.50 2.75 -72.93 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.23 Total: 28.38 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.91 Total: -5.92 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -4.30 Total: -123.34 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.85 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.07 Total: 2.79 kcal Total: -75.67 2.75 -72.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107023632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.722 kcal (2) G-P(sol) polarization free energy of solvation -75.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds