Wall clock time and date at job start Tue Mar 31 2020 14:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46992 * 180.08803 * 3 2 1 5 5 N 1.46896 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.46909 * 111.00213 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.17338 * 35.44341 * 6 5 4 8 8 C 1.53024 * 109.32655 * 155.00130 * 6 5 4 9 9 C 1.53977 * 108.82276 * 175.67855 * 8 6 5 10 10 H 1.09007 * 112.99244 * 169.00255 * 9 8 6 11 11 C 1.55426 * 106.41426 * 293.81664 * 9 8 6 12 12 C 1.57425 * 99.36565 * 73.93383 * 11 9 8 13 13 H 1.08997 * 112.42248 * 162.49228 * 12 11 9 14 14 C 1.52437 * 109.53438 * 277.78323 * 6 5 4 15 15 N 1.47792 * 104.52524 * 40.23105 * 12 11 9 16 16 C 1.34777 * 125.85568 * 153.66742 * 15 12 11 17 17 O 1.21279 * 119.99992 * 359.97438 * 16 15 12 18 18 C 1.50696 * 119.99587 * 179.97438 * 16 15 12 19 19 S 1.81011 * 109.46899 * 179.97438 * 18 16 15 20 20 C 1.76195 * 99.99822 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00290 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99781 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99769 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47583 * 90.00282 * 24 22 20 26 26 H 1.48500 * 109.46899 * 209.99814 * 24 22 20 27 27 H 1.48498 * 109.47690 * 329.99561 * 24 22 20 28 28 C 1.47082 * 108.28470 * 333.63072 * 15 12 11 29 29 H 4.44649 * 5.63443 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47304 * 60.08863 * 3 2 1 31 31 H 1.09005 * 109.47150 * 300.08959 * 3 2 1 32 32 H 1.08998 * 109.47046 * 60.00458 * 4 3 2 33 33 H 1.08993 * 109.46941 * 299.99796 * 4 3 2 34 34 H 1.00902 * 111.00430 * 303.95218 * 5 4 3 35 35 H 1.09001 * 109.57966 * 55.88157 * 8 6 5 36 36 H 1.08994 * 109.58202 * 295.47919 * 8 6 5 37 37 H 1.09005 * 111.23139 * 191.15050 * 11 9 8 38 38 H 1.08989 * 111.23752 * 315.60115 * 11 9 8 39 39 H 1.09004 * 110.84236 * 64.72070 * 14 6 5 40 40 H 1.08996 * 108.65049 * 304.32140 * 14 6 5 41 41 H 1.08998 * 109.47344 * 299.99435 * 18 16 15 42 42 H 1.08995 * 109.47582 * 60.00129 * 18 16 15 43 43 H 0.97001 * 119.99838 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.97839 * 241.74685 * 28 15 12 45 45 H 1.08994 * 109.97331 * 120.46904 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1552 1.4434 0.0022 5 7 4.6242 1.4440 0.0028 6 6 5.1501 2.8157 0.0043 7 1 4.4949 3.4497 0.6017 8 6 6.5532 2.8195 0.6152 9 6 7.1361 4.2410 0.5121 10 1 8.0498 4.3696 1.0925 11 6 7.3281 4.5281 -1.0033 12 6 5.8245 4.7466 -1.4152 13 1 5.7258 5.2582 -2.3725 14 6 5.1516 3.3627 -1.4185 15 7 5.2431 5.5209 -0.2987 16 6 4.1874 6.3547 -0.3817 17 8 3.6280 6.5208 -1.4448 18 6 3.7023 7.0805 0.8466 19 16 2.2822 8.1162 0.4139 20 6 1.9305 8.8261 1.9877 21 1 2.5350 8.5671 2.8442 22 6 0.8763 9.7184 2.1265 23 7 0.1398 10.0345 1.0824 24 14 0.5038 10.4715 3.7948 25 1 1.2680 11.7355 3.9492 26 1 -0.9500 10.7567 3.8957 27 1 0.8972 9.5213 4.8660 28 6 6.0135 5.2248 0.9187 29 1 -1.0503 -0.0004 0.0002 30 1 3.0095 -0.5116 -0.8908 31 1 3.0095 -0.5144 0.8892 32 1 2.7917 1.9556 0.8930 33 1 2.7917 1.9584 -0.8869 34 1 4.9858 0.9170 0.7836 35 1 7.1906 2.1230 0.0705 36 1 6.4964 2.5232 1.6625 37 1 7.9158 5.4322 -1.1624 38 1 7.7746 3.6746 -1.5134 39 1 4.1346 3.4528 -1.8004 40 1 5.7200 2.6825 -2.0528 41 1 3.4057 6.3550 1.6041 42 1 4.5031 7.7078 1.2381 43 1 -0.5967 10.6583 1.1793 44 1 5.3672 4.7642 1.6657 45 1 6.4481 6.1418 1.3165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108624173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:41 Heat of formation + Delta-G solvation = 20.681849 kcal Electronic energy + Delta-G solvation = -25018.870463 eV Core-core repulsion = 21549.718484 eV Total energy + Delta-G solvation = -3469.151979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07394 -38.18856 -36.72772 -34.24052 -32.60681 -32.42945 -31.45756 -30.50219 -28.66191 -27.66900 -25.92613 -25.47540 -23.13655 -22.26013 -21.52723 -19.76856 -18.88470 -18.22558 -17.73448 -16.80478 -16.47219 -15.78848 -15.33190 -14.94903 -14.87424 -14.80532 -14.49964 -14.14549 -13.82642 -13.71255 -13.23103 -13.07325 -12.75249 -12.65132 -12.59709 -12.38932 -12.18411 -12.02984 -11.96715 -11.74615 -11.32135 -11.06868 -11.02677 -11.01324 -10.76633 -10.57521 -10.33621 -10.27455 -10.18917 -9.81540 -9.35913 -9.06989 -8.68202 -8.44741 -8.23421 -6.50377 -6.21977 -3.92536 2.64341 2.70971 2.92208 3.08545 3.21598 3.25515 3.29707 3.61375 3.76590 4.19078 4.22062 4.27472 4.37972 4.59912 4.74429 4.90042 4.92009 5.04181 5.04644 5.08176 5.13100 5.14040 5.27736 5.31971 5.35783 5.42273 5.52634 5.60988 5.64629 5.69443 5.74661 5.77345 5.79644 5.87865 5.89132 5.95486 5.96436 6.07123 6.13542 6.15659 6.50487 6.78005 7.14320 7.48912 7.58938 7.73097 8.34729 8.59074 9.23207 10.85489 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.003591 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.054237 B = 7796.308023 C = 9533.839922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.191 4.191 3 C -0.007 4.007 4 C 0.062 3.938 5 N -0.686 5.686 6 C 0.087 3.913 7 H 0.050 0.950 8 C -0.114 4.114 9 C -0.099 4.099 10 H 0.102 0.898 11 C -0.126 4.126 12 C 0.134 3.866 13 H 0.099 0.901 14 C -0.116 4.116 15 N -0.620 5.620 16 C 0.549 3.451 17 O -0.515 6.515 18 C -0.146 4.146 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.104 3.896 29 H 0.217 0.783 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.339 0.661 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.504 -19.499 -0.134 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.192 4.192 3 C -0.044 4.044 4 C -0.067 4.067 5 N -0.317 5.317 6 C -0.022 4.022 7 H 0.068 0.932 8 C -0.152 4.152 9 C -0.119 4.119 10 H 0.120 0.880 11 C -0.164 4.164 12 C 0.030 3.970 13 H 0.117 0.883 14 C -0.155 4.155 15 N -0.358 5.358 16 C 0.337 3.663 17 O -0.389 6.389 18 C -0.297 4.297 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.019 4.019 29 H 0.234 0.766 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.470 -19.152 -2.459 23.543 hybrid contribution -0.108 0.584 3.348 3.400 sum 13.362 -18.568 0.889 22.893 Atomic orbital electron populations 1.24971 0.96054 1.00025 1.00967 1.22994 0.94497 1.01070 1.00637 1.18618 0.84599 0.97641 1.03566 1.21929 0.87558 0.95381 1.01834 1.60466 1.07010 1.14417 1.49799 1.21449 0.95243 0.88457 0.97094 0.93225 1.21949 0.95954 0.96679 1.00600 1.22601 0.97731 0.94349 0.97187 0.87999 1.23411 0.95518 1.02312 0.95156 1.22582 0.91635 0.91090 0.91666 0.88336 1.21938 1.01846 0.95230 0.96455 1.48652 1.31658 1.45516 1.09967 1.19989 0.78125 0.77672 0.90489 1.90705 1.55224 1.62752 1.30253 1.23504 1.05397 1.02692 0.98096 1.85398 1.30976 1.51830 1.15139 1.22857 1.19169 1.31202 0.95143 0.91006 1.24984 0.95004 0.95708 0.97814 1.70020 1.18187 1.32697 1.29347 0.86177 0.77702 0.79343 0.82337 1.20237 1.20722 1.19719 1.22130 0.92993 0.98683 0.88111 0.76575 0.88801 0.89913 0.94645 0.90297 0.84336 0.90490 0.91692 0.90678 0.89467 0.91399 0.90586 0.89645 0.89395 0.92179 0.91418 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 19.25 29.55 0.57 -1.61 16 2 C -0.19 -2.16 13.34 -37.12 -0.50 -2.66 16 3 C -0.01 -0.07 5.96 -29.52 -0.18 -0.24 16 4 C 0.06 0.65 5.42 -3.83 -0.02 0.63 16 5 N -0.69 -6.15 6.32 -107.02 -0.68 -6.82 16 6 C 0.09 0.86 2.07 -67.98 -0.14 0.72 16 7 H 0.05 0.62 5.62 -51.93 -0.29 0.33 16 8 C -0.11 -0.83 4.76 -26.21 -0.12 -0.96 16 9 C -0.10 -0.76 4.27 -87.92 -0.38 -1.14 16 10 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 11 C -0.13 -1.05 6.34 -23.03 -0.15 -1.19 16 12 C 0.13 1.61 3.98 -64.35 -0.26 1.36 16 13 H 0.10 1.32 8.02 -51.93 -0.42 0.91 16 14 C -0.12 -1.31 5.18 -26.56 -0.14 -1.45 16 15 N -0.62 -8.93 2.35 -160.42 -0.38 -9.31 16 16 C 0.55 10.75 7.87 -10.99 -0.09 10.66 16 17 O -0.52 -12.11 16.12 5.56 0.09 -12.02 16 18 C -0.15 -3.07 5.36 36.00 0.19 -2.88 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 24 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.10 1.13 5.24 -2.83 -0.01 1.11 16 29 H 0.22 1.64 7.80 -54.07 -0.42 1.22 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.41 8.05 -51.93 -0.42 0.00 16 33 H 0.08 0.98 7.40 -51.93 -0.38 0.60 16 34 H 0.34 2.42 8.35 -39.29 -0.33 2.09 16 35 H 0.08 0.51 7.97 -51.93 -0.41 0.09 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.59 7.83 -51.94 -0.41 0.18 16 39 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 40 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.07 0.73 6.83 -51.93 -0.35 0.38 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -34.80 378.19 -9.95 -44.75 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.17 Total: 1.41 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.01 Total: -10.73 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.32 Total: -41.75 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.80 -9.95 -44.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108624173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.432 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds