Wall clock time and date at job start Tue Mar 31 2020 14:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46992 * 180.08803 * 3 2 1 5 5 N 1.46896 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.46909 * 111.00213 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.17338 * 35.44341 * 6 5 4 8 8 C 1.53024 * 109.32655 * 155.00130 * 6 5 4 9 9 C 1.53977 * 108.82276 * 175.67855 * 8 6 5 10 10 H 1.09007 * 112.99244 * 169.00255 * 9 8 6 11 11 C 1.55426 * 106.41426 * 293.81664 * 9 8 6 12 12 C 1.57425 * 99.36565 * 73.93383 * 11 9 8 13 13 H 1.08997 * 112.42248 * 162.49228 * 12 11 9 14 14 C 1.52437 * 109.53438 * 277.78323 * 6 5 4 15 15 N 1.47792 * 104.52524 * 40.23105 * 12 11 9 16 16 C 1.34777 * 125.85568 * 153.66742 * 15 12 11 17 17 O 1.21279 * 119.99992 * 359.97438 * 16 15 12 18 18 C 1.50696 * 119.99587 * 179.97438 * 16 15 12 19 19 S 1.81011 * 109.46899 * 179.97438 * 18 16 15 20 20 C 1.76195 * 99.99822 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00290 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99781 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99754 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99769 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47583 * 90.00282 * 24 22 20 26 26 H 1.48500 * 109.46899 * 209.99814 * 24 22 20 27 27 H 1.48498 * 109.47690 * 329.99561 * 24 22 20 28 28 C 1.47082 * 108.28470 * 333.63072 * 15 12 11 29 29 H 4.44649 * 5.63443 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47304 * 60.08863 * 3 2 1 31 31 H 1.09005 * 109.47150 * 300.08959 * 3 2 1 32 32 H 1.08998 * 109.47046 * 60.00458 * 4 3 2 33 33 H 1.08993 * 109.46941 * 299.99796 * 4 3 2 34 34 H 1.00902 * 111.00430 * 303.95218 * 5 4 3 35 35 H 1.09001 * 109.57966 * 55.88157 * 8 6 5 36 36 H 1.08994 * 109.58202 * 295.47919 * 8 6 5 37 37 H 1.09005 * 111.23139 * 191.15050 * 11 9 8 38 38 H 1.08989 * 111.23752 * 315.60115 * 11 9 8 39 39 H 1.09004 * 110.84236 * 64.72070 * 14 6 5 40 40 H 1.08996 * 108.65049 * 304.32140 * 14 6 5 41 41 H 1.08998 * 109.47344 * 299.99435 * 18 16 15 42 42 H 1.08995 * 109.47582 * 60.00129 * 18 16 15 43 43 H 0.97001 * 119.99838 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.97839 * 241.74685 * 28 15 12 45 45 H 1.08994 * 109.97331 * 120.46904 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1552 1.4434 0.0022 5 7 4.6242 1.4440 0.0028 6 6 5.1501 2.8157 0.0043 7 1 4.4949 3.4497 0.6017 8 6 6.5532 2.8195 0.6152 9 6 7.1361 4.2410 0.5121 10 1 8.0498 4.3696 1.0925 11 6 7.3281 4.5281 -1.0033 12 6 5.8245 4.7466 -1.4152 13 1 5.7258 5.2582 -2.3725 14 6 5.1516 3.3627 -1.4185 15 7 5.2431 5.5209 -0.2987 16 6 4.1874 6.3547 -0.3817 17 8 3.6280 6.5208 -1.4448 18 6 3.7023 7.0805 0.8466 19 16 2.2822 8.1162 0.4139 20 6 1.9305 8.8261 1.9877 21 1 2.5350 8.5671 2.8442 22 6 0.8763 9.7184 2.1265 23 7 0.1398 10.0345 1.0824 24 14 0.5038 10.4715 3.7948 25 1 1.2680 11.7355 3.9492 26 1 -0.9500 10.7567 3.8957 27 1 0.8972 9.5213 4.8660 28 6 6.0135 5.2248 0.9187 29 1 -1.0503 -0.0004 0.0002 30 1 3.0095 -0.5116 -0.8908 31 1 3.0095 -0.5144 0.8892 32 1 2.7917 1.9556 0.8930 33 1 2.7917 1.9584 -0.8869 34 1 4.9858 0.9170 0.7836 35 1 7.1906 2.1230 0.0705 36 1 6.4964 2.5232 1.6625 37 1 7.9158 5.4322 -1.1624 38 1 7.7746 3.6746 -1.5134 39 1 4.1346 3.4528 -1.8004 40 1 5.7200 2.6825 -2.0528 41 1 3.4057 6.3550 1.6041 42 1 4.5031 7.7078 1.2381 43 1 -0.5967 10.6583 1.1793 44 1 5.3672 4.7642 1.6657 45 1 6.4481 6.1418 1.3165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108624173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:40 Heat of formation + Delta-G solvation = -2.235253 kcal Electronic energy + Delta-G solvation = -25019.864223 eV Core-core repulsion = 21549.718484 eV Total energy + Delta-G solvation = -3470.145739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.06054 -39.58850 -37.62993 -35.14661 -34.62817 -33.68064 -32.38848 -31.46021 -30.09914 -28.44290 -27.71005 -26.82715 -23.98736 -23.31426 -22.37892 -20.70542 -20.16539 -19.57651 -19.01440 -18.11644 -17.57906 -16.92322 -16.66142 -16.53670 -16.20353 -16.05702 -15.66463 -15.34707 -15.09773 -14.62522 -14.47602 -14.12946 -13.94370 -13.81196 -13.60970 -13.51457 -13.20602 -13.16668 -12.94275 -12.91749 -12.85912 -12.78461 -12.60393 -12.19595 -11.79137 -11.69494 -11.36053 -11.17885 -11.14704 -11.07890 -10.99229 -10.93945 -10.33890 -9.69470 -9.47988 -8.73274 -8.38377 -6.18016 1.20207 1.39910 1.41769 1.53115 1.53504 1.77832 1.85377 2.07088 2.23604 2.95699 2.98163 3.19938 3.44808 3.49034 3.63982 3.83859 3.87967 3.98179 4.05669 4.08711 4.17045 4.22660 4.30228 4.33778 4.38717 4.48779 4.53213 4.60779 4.65297 4.76043 4.83575 4.92197 4.96587 5.03095 5.07185 5.12866 5.22459 5.24298 5.26779 5.32593 5.36954 5.44658 5.93877 6.15568 6.40883 6.49663 6.65563 7.02275 7.09991 8.71150 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.003591 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.054237 B = 7796.308023 C = 9533.839922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.220 4.220 3 C -0.001 4.001 4 C 0.070 3.930 5 N -0.675 5.675 6 C 0.090 3.910 7 H 0.018 0.982 8 C -0.106 4.106 9 C -0.083 4.083 10 H 0.139 0.861 11 C -0.111 4.111 12 C 0.119 3.881 13 H 0.074 0.926 14 C -0.109 4.109 15 N -0.609 5.609 16 C 0.544 3.456 17 O -0.570 6.570 18 C -0.118 4.118 19 S -0.151 6.151 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.258 1.258 28 C 0.089 3.911 29 H 0.239 0.761 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.017 0.983 33 H 0.048 0.952 34 H 0.355 0.645 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.025 0.975 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.272 0.728 44 H 0.069 0.931 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.677 -21.323 2.415 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.221 4.221 3 C -0.038 4.038 4 C -0.060 4.060 5 N -0.307 5.307 6 C -0.020 4.020 7 H 0.036 0.964 8 C -0.144 4.144 9 C -0.102 4.102 10 H 0.157 0.843 11 C -0.149 4.149 12 C 0.016 3.984 13 H 0.092 0.908 14 C -0.149 4.149 15 N -0.343 5.343 16 C 0.332 3.668 17 O -0.449 6.449 18 C -0.269 4.269 19 S 0.076 5.924 20 C -0.696 4.696 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.182 1.182 28 C -0.033 4.033 29 H 0.256 0.744 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.175 0.825 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.044 0.956 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.709 -21.027 0.114 26.857 hybrid contribution -1.049 1.057 2.487 2.899 sum 15.660 -19.969 2.602 25.510 Atomic orbital electron populations 1.25749 0.97144 0.99514 1.00687 1.23715 0.95732 1.01585 1.01057 1.18656 0.83447 0.96557 1.05097 1.21752 0.88690 0.96080 0.99482 1.60387 1.05751 1.14034 1.50555 1.21423 0.96945 0.88210 0.95425 0.96401 1.21948 0.93692 0.96965 1.01749 1.22686 0.97582 0.93208 0.96750 0.84284 1.23420 0.91831 1.03810 0.95800 1.22859 0.94865 0.90556 0.90108 0.90765 1.21851 0.99591 0.95389 0.98022 1.48596 1.29843 1.43350 1.12537 1.19749 0.79347 0.78569 0.89156 1.90677 1.57468 1.65042 1.31671 1.23280 1.02592 1.01926 0.99087 1.85593 1.35472 1.54156 1.17147 1.23178 1.19779 1.31575 0.95025 0.90042 1.26152 0.94462 0.95946 1.02453 1.70189 1.18877 1.33510 1.32174 0.84934 0.77674 0.78625 0.76628 1.19067 1.20147 1.18190 1.22537 0.93828 1.00322 0.86576 0.74404 0.87826 0.87578 0.96452 0.93372 0.82460 0.88254 0.89823 0.90157 0.86653 0.95648 0.88619 0.88413 0.87657 0.91905 0.91260 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.64 19.25 74.32 1.43 -3.21 16 2 C -0.22 -5.02 13.34 31.13 0.42 -4.61 16 3 C 0.00 -0.02 5.96 28.79 0.17 0.16 16 4 C 0.07 1.49 5.42 86.30 0.47 1.96 16 5 N -0.68 -11.02 6.32 -492.50 -3.11 -14.13 16 6 C 0.09 1.65 2.07 44.73 0.09 1.74 16 7 H 0.02 0.45 5.62 -2.39 -0.01 0.44 16 8 C -0.11 -1.07 4.76 30.93 0.15 -0.92 16 9 C -0.08 -0.89 4.27 -9.05 -0.04 -0.93 16 10 H 0.14 0.69 8.14 -2.38 -0.02 0.67 16 11 C -0.11 -1.44 6.34 32.99 0.21 -1.23 16 12 C 0.12 2.84 3.98 46.60 0.19 3.03 16 13 H 0.07 2.12 8.02 -2.39 -0.02 2.10 16 14 C -0.11 -2.49 5.18 30.71 0.16 -2.33 16 15 N -0.61 -17.59 2.35 -779.83 -1.83 -19.42 16 16 C 0.54 22.32 7.87 87.66 0.69 23.01 16 17 O -0.57 -28.85 16.12 -3.03 -0.05 -28.90 16 18 C -0.12 -5.07 5.36 71.23 0.38 -4.69 16 19 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 20 C -0.55 -32.15 9.50 67.96 0.65 -31.50 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.85 5.49 84.86 0.47 1.32 16 23 N -0.91 -57.00 13.22 21.65 0.29 -56.71 16 24 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 28 C 0.09 1.72 5.24 86.85 0.46 2.18 16 29 H 0.24 3.56 7.80 -4.40 -0.03 3.52 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.02 0.43 8.05 -2.39 -0.02 0.41 16 33 H 0.05 1.32 7.40 -2.39 -0.02 1.30 16 34 H 0.36 3.96 8.35 -89.69 -0.75 3.21 16 35 H 0.10 0.69 7.97 -2.39 -0.02 0.67 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.12 0.95 7.83 -2.39 -0.02 0.93 16 39 H 0.02 0.77 7.49 -2.39 -0.02 0.76 16 40 H 0.10 1.77 8.06 -2.39 -0.02 1.75 16 41 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 42 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.07 1.36 6.83 -2.39 -0.02 1.34 16 45 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -82.42 378.19 2.27 -80.15 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.23 Total: 18.76 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 5.88 Total: -16.02 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -4.66 Total: -90.26 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.05 Total: -28.90 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -82.42 2.27 -80.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108624173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.915 kcal (2) G-P(sol) polarization free energy of solvation -82.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds