Wall clock time and date at job start Tue Mar 31 2020 14:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47014 * 308.01435 * 3 2 1 5 5 N 1.46905 * 109.47005 * 180.02562 * 4 3 2 6 6 C 1.46894 * 111.00025 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.32911 * 35.66782 * 6 5 4 8 8 C 1.53037 * 109.17756 * 276.11278 * 6 5 4 9 9 C 1.53967 * 108.82389 * 295.22965 * 8 6 5 10 10 H 1.09005 * 112.99038 * 169.00291 * 9 8 6 11 11 C 1.56591 * 106.92134 * 293.89687 * 9 8 6 12 12 C 1.55175 * 99.83735 * 72.75791 * 11 9 8 13 13 H 1.08999 * 112.48426 * 163.44095 * 12 11 9 14 14 C 1.52987 * 109.32572 * 155.31502 * 6 5 4 15 15 N 1.47790 * 104.25622 * 41.32455 * 12 11 9 16 16 C 1.34773 * 125.86046 * 153.53788 * 15 12 11 17 17 O 1.21288 * 119.99511 * 359.97438 * 16 15 12 18 18 C 1.50696 * 120.00268 * 179.97438 * 16 15 12 19 19 S 1.81002 * 109.47119 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99951 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99915 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00116 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99524 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00062 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46997 * 59.99983 * 24 22 20 26 26 H 1.48501 * 109.47254 * 299.99987 * 24 22 20 27 27 H 1.48502 * 109.47131 * 179.97438 * 24 22 20 28 28 C 1.47089 * 108.28204 * 333.79189 * 15 12 11 29 29 H 4.44647 * 5.63307 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47198 * 188.01329 * 3 2 1 31 31 H 1.09007 * 109.46907 * 68.01516 * 3 2 1 32 32 H 1.08998 * 109.47260 * 60.00466 * 4 3 2 33 33 H 1.08996 * 109.47026 * 299.99485 * 4 3 2 34 34 H 1.00899 * 110.99575 * 303.95047 * 5 4 3 35 35 H 1.08990 * 109.57731 * 55.03804 * 8 6 5 36 36 H 1.09000 * 109.57538 * 175.43294 * 8 6 5 37 37 H 1.08994 * 110.80494 * 315.42445 * 11 9 8 38 38 H 1.09009 * 112.14645 * 190.62321 * 11 9 8 39 39 H 1.08996 * 109.52858 * 305.10931 * 14 6 5 40 40 H 1.09000 * 109.59373 * 184.92486 * 14 6 5 41 41 H 1.08995 * 109.47018 * 59.99851 * 18 16 15 42 42 H 1.09001 * 109.46919 * 299.99557 * 18 16 15 43 43 H 0.96998 * 120.00579 * 359.97438 * 23 22 20 44 44 H 1.09001 * 109.97291 * 120.21004 * 28 15 12 45 45 H 1.09005 * 109.97506 * 241.48791 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.8875 1.1365 5 7 4.6254 -0.8863 1.1368 6 6 5.1522 -1.7311 2.2169 7 1 4.5020 -2.5961 2.3482 8 6 5.1877 -0.9226 3.5158 9 6 6.1919 0.2333 3.3541 10 1 6.1346 0.9631 4.1617 11 6 7.6115 -0.4125 3.2138 12 6 7.4992 -0.9904 1.7781 13 1 8.4708 -1.2412 1.3524 14 6 6.5587 -2.2064 1.8477 15 7 6.8038 0.0662 1.0138 16 6 6.9051 0.2771 -0.3135 17 8 7.6179 -0.4356 -0.9880 18 6 6.1328 1.3984 -0.9594 19 16 6.4773 1.4230 -2.7362 20 6 5.4761 2.7887 -3.2231 21 1 4.8945 3.3219 -2.4856 22 6 5.4340 3.1786 -4.5546 23 7 6.1425 2.5284 -5.4534 24 14 4.3721 4.6260 -5.0708 25 1 4.8173 5.8475 -4.3531 26 1 2.9534 4.3438 -4.7347 27 1 4.5017 4.8377 -6.5349 28 6 5.9870 0.8521 1.9512 29 1 -1.0499 0.0000 0.0003 30 1 3.0089 1.0184 0.1433 31 1 3.0095 -0.3839 -0.9530 32 1 2.7936 -1.9053 0.9932 33 1 2.7929 -0.5028 2.0894 34 1 4.9874 -1.1776 0.2412 35 1 4.1965 -0.5192 3.7220 36 1 5.5008 -1.5660 4.3380 37 1 7.7505 -1.2053 3.9488 38 1 8.4084 0.3284 3.2799 39 1 6.5327 -2.7030 0.8778 40 1 6.9194 -2.9033 2.6043 41 1 6.4340 2.3484 -0.5181 42 1 5.0658 1.2447 -0.7979 43 1 6.6943 1.7770 -5.1852 44 1 6.3018 1.8955 1.9350 45 1 4.9336 0.7764 1.6811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108624178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:45 Heat of formation + Delta-G solvation = 48.904367 kcal Electronic energy + Delta-G solvation = -26222.506313 eV Core-core repulsion = 22754.578154 eV Total energy + Delta-G solvation = -3467.928159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30521 -38.04969 -36.34950 -33.96876 -32.69358 -32.47194 -31.56656 -30.27791 -28.77701 -27.55120 -25.61874 -24.77574 -22.94311 -22.04814 -21.95019 -19.64561 -18.83869 -18.17865 -17.96975 -16.98161 -16.41145 -15.59464 -15.31214 -15.16392 -14.68632 -14.48368 -14.04276 -13.81582 -13.68988 -13.55681 -13.11128 -13.00344 -12.68298 -12.55165 -12.47825 -12.30185 -12.18151 -12.08211 -11.86200 -11.74191 -11.54515 -11.47410 -10.88781 -10.84423 -10.50799 -10.28419 -10.17947 -10.14781 -10.08061 -9.49061 -9.28838 -8.96189 -8.34447 -8.14084 -7.94334 -6.59781 -6.56807 -3.93496 2.77720 2.84392 2.99599 3.16944 3.37611 3.40566 3.58644 3.66557 3.87420 4.28421 4.32015 4.47788 4.48759 4.61738 4.82852 4.98164 5.01256 5.03450 5.09778 5.14867 5.17085 5.27599 5.29599 5.39071 5.44617 5.51687 5.57454 5.62367 5.75636 5.77273 5.82753 5.88316 5.91947 5.95144 5.98622 6.02349 6.03195 6.14360 6.22192 6.47798 6.71938 6.82915 7.16195 7.61103 7.93650 7.98159 8.55514 8.70224 9.32742 10.87165 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.004564 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.748280 B = 6133.187515 C = 7701.391135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.174 4.174 3 C -0.018 4.018 4 C 0.057 3.943 5 N -0.669 5.669 6 C 0.090 3.910 7 H 0.045 0.955 8 C -0.102 4.102 9 C -0.096 4.096 10 H 0.092 0.908 11 C -0.130 4.130 12 C 0.138 3.862 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.596 5.596 16 C 0.548 3.452 17 O -0.533 6.533 18 C -0.119 4.119 19 S -0.122 6.122 20 C -0.604 4.604 21 H 0.064 0.936 22 C 0.036 3.964 23 N -0.886 5.886 24 Si 1.081 2.919 25 H -0.285 1.285 26 H -0.285 1.285 27 H -0.278 1.278 28 C 0.098 3.902 29 H 0.215 0.785 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.348 0.652 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.278 0.722 44 H 0.041 0.959 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 -7.734 21.845 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.175 4.175 3 C -0.055 4.055 4 C -0.072 4.072 5 N -0.302 5.302 6 C -0.020 4.020 7 H 0.063 0.937 8 C -0.140 4.140 9 C -0.114 4.114 10 H 0.110 0.890 11 C -0.168 4.168 12 C 0.034 3.966 13 H 0.111 0.889 14 C -0.172 4.172 15 N -0.331 5.331 16 C 0.336 3.664 17 O -0.409 6.409 18 C -0.270 4.270 19 S 0.104 5.896 20 C -0.752 4.752 21 H 0.082 0.918 22 C -0.175 4.175 23 N -0.520 5.520 24 Si 0.907 3.093 25 H -0.212 1.212 26 H -0.212 1.212 27 H -0.203 1.203 28 C -0.025 4.025 29 H 0.232 0.768 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.417 -7.321 19.787 21.555 hybrid contribution -0.883 -0.810 1.824 2.183 sum -5.300 -8.130 21.611 23.691 Atomic orbital electron populations 1.24831 0.95899 1.01533 1.01287 1.23012 0.94387 0.99999 1.00093 1.18742 0.84597 1.02242 0.99904 1.22010 0.88548 0.97936 0.98744 1.61513 1.05860 1.54481 1.08353 1.21453 0.94998 0.93491 0.92021 0.93711 1.21769 0.99458 0.96814 0.95956 1.22697 0.94326 0.97037 0.97381 0.88992 1.23242 0.97344 1.00465 0.95767 1.22025 0.95650 0.87888 0.91085 0.88923 1.22309 0.94886 0.97896 1.02148 1.48358 1.46136 1.32494 1.06107 1.19842 0.81513 0.85026 0.80004 1.90700 1.39966 1.48553 1.61675 1.23272 1.02647 0.98909 1.02172 1.84789 1.63220 1.44100 0.97448 1.23684 1.33928 1.18539 0.99019 0.91754 1.25990 0.98032 1.01890 0.91542 1.70791 1.25239 1.20007 1.35994 0.83371 0.75154 0.74263 0.76476 1.21173 1.21186 1.20348 1.22610 1.00460 0.92291 0.87100 0.76780 0.88477 0.89028 0.94980 0.90566 0.83075 0.91533 0.91623 0.90412 0.90831 0.91395 0.90579 0.89618 0.88864 0.90999 0.94045 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.53 19.25 29.55 0.57 -1.96 16 2 C -0.17 -2.26 13.34 -37.12 -0.50 -2.75 16 3 C -0.02 -0.22 5.74 -29.52 -0.17 -0.39 16 4 C 0.06 0.57 5.09 -3.82 -0.02 0.55 16 5 N -0.67 -7.07 1.46 -106.72 -0.16 -7.23 16 6 C 0.09 0.81 2.79 -67.70 -0.19 0.62 16 7 H 0.04 0.39 7.80 -51.93 -0.41 -0.01 16 8 C -0.10 -0.76 5.30 -26.21 -0.14 -0.90 16 9 C -0.10 -0.80 4.31 -87.29 -0.38 -1.17 16 10 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 11 C -0.13 -1.12 6.27 -23.64 -0.15 -1.27 16 12 C 0.14 1.59 3.93 -65.61 -0.26 1.33 16 13 H 0.09 1.22 8.02 -51.93 -0.42 0.80 16 14 C -0.13 -1.31 5.23 -26.28 -0.14 -1.45 16 15 N -0.60 -8.21 1.72 -161.82 -0.28 -8.48 16 16 C 0.55 10.21 6.48 -10.99 -0.07 10.14 16 17 O -0.53 -12.03 16.12 5.55 0.09 -11.94 16 18 C -0.12 -2.42 5.36 36.00 0.19 -2.23 16 19 S -0.12 -3.27 19.60 -107.50 -2.11 -5.38 16 20 C -0.60 -17.38 9.50 30.94 0.29 -17.08 16 21 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 22 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 23 N -0.89 -27.70 13.67 55.49 0.76 -26.95 16 24 Si 1.08 25.19 29.92 -169.99 -5.09 20.10 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.10 1.10 5.13 -2.83 -0.01 1.09 16 29 H 0.22 1.71 7.80 -54.10 -0.42 1.28 16 30 H 0.10 1.22 7.70 -51.93 -0.40 0.82 16 31 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.03 0.33 8.05 -51.93 -0.42 -0.09 16 33 H 0.08 0.70 7.27 -51.93 -0.38 0.32 16 34 H 0.35 4.59 6.65 -39.29 -0.26 4.33 16 35 H 0.07 0.49 7.26 -51.93 -0.38 0.11 16 36 H 0.07 0.42 8.01 -51.93 -0.42 0.00 16 37 H 0.08 0.54 7.81 -51.93 -0.41 0.13 16 38 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.07 0.80 8.02 -51.93 -0.42 0.39 16 40 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.75 7.47 -51.92 -0.39 1.36 16 43 H 0.28 8.87 7.12 -40.82 -0.29 8.58 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.13 1.41 5.03 -54.24 -0.27 1.14 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -34.05 367.58 -9.30 -43.35 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.00 Total: 5.52 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.06 Total: -14.53 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.32 Total: -42.66 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.09 Total: 20.10 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.11 Total: -5.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.05 -9.30 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108624178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.258 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds