Wall clock time and date at job start Tue Mar 31 2020 14:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47014 * 308.01435 * 3 2 1 5 5 N 1.46905 * 109.47005 * 180.02562 * 4 3 2 6 6 C 1.46894 * 111.00025 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.32911 * 35.66782 * 6 5 4 8 8 C 1.53037 * 109.17756 * 276.11278 * 6 5 4 9 9 C 1.53967 * 108.82389 * 295.22965 * 8 6 5 10 10 H 1.09005 * 112.99038 * 169.00291 * 9 8 6 11 11 C 1.56591 * 106.92134 * 293.89687 * 9 8 6 12 12 C 1.55175 * 99.83735 * 72.75791 * 11 9 8 13 13 H 1.08999 * 112.48426 * 163.44095 * 12 11 9 14 14 C 1.52987 * 109.32572 * 155.31502 * 6 5 4 15 15 N 1.47790 * 104.25622 * 41.32455 * 12 11 9 16 16 C 1.34773 * 125.86046 * 153.53788 * 15 12 11 17 17 O 1.21288 * 119.99511 * 359.97438 * 16 15 12 18 18 C 1.50696 * 120.00268 * 179.97438 * 16 15 12 19 19 S 1.81002 * 109.47119 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99951 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99915 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00116 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99524 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00062 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46997 * 59.99983 * 24 22 20 26 26 H 1.48501 * 109.47254 * 299.99987 * 24 22 20 27 27 H 1.48502 * 109.47131 * 179.97438 * 24 22 20 28 28 C 1.47089 * 108.28204 * 333.79189 * 15 12 11 29 29 H 4.44647 * 5.63307 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47198 * 188.01329 * 3 2 1 31 31 H 1.09007 * 109.46907 * 68.01516 * 3 2 1 32 32 H 1.08998 * 109.47260 * 60.00466 * 4 3 2 33 33 H 1.08996 * 109.47026 * 299.99485 * 4 3 2 34 34 H 1.00899 * 110.99575 * 303.95047 * 5 4 3 35 35 H 1.08990 * 109.57731 * 55.03804 * 8 6 5 36 36 H 1.09000 * 109.57538 * 175.43294 * 8 6 5 37 37 H 1.08994 * 110.80494 * 315.42445 * 11 9 8 38 38 H 1.09009 * 112.14645 * 190.62321 * 11 9 8 39 39 H 1.08996 * 109.52858 * 305.10931 * 14 6 5 40 40 H 1.09000 * 109.59373 * 184.92486 * 14 6 5 41 41 H 1.08995 * 109.47018 * 59.99851 * 18 16 15 42 42 H 1.09001 * 109.46919 * 299.99557 * 18 16 15 43 43 H 0.96998 * 120.00579 * 359.97438 * 23 22 20 44 44 H 1.09001 * 109.97291 * 120.21004 * 28 15 12 45 45 H 1.09005 * 109.97506 * 241.48791 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.8875 1.1365 5 7 4.6254 -0.8863 1.1368 6 6 5.1522 -1.7311 2.2169 7 1 4.5020 -2.5961 2.3482 8 6 5.1877 -0.9226 3.5158 9 6 6.1919 0.2333 3.3541 10 1 6.1346 0.9631 4.1617 11 6 7.6115 -0.4125 3.2138 12 6 7.4992 -0.9904 1.7781 13 1 8.4708 -1.2412 1.3524 14 6 6.5587 -2.2064 1.8477 15 7 6.8038 0.0662 1.0138 16 6 6.9051 0.2771 -0.3135 17 8 7.6179 -0.4356 -0.9880 18 6 6.1328 1.3984 -0.9594 19 16 6.4773 1.4230 -2.7362 20 6 5.4761 2.7887 -3.2231 21 1 4.8945 3.3219 -2.4856 22 6 5.4340 3.1786 -4.5546 23 7 6.1425 2.5284 -5.4534 24 14 4.3721 4.6260 -5.0708 25 1 4.8173 5.8475 -4.3531 26 1 2.9534 4.3438 -4.7347 27 1 4.5017 4.8377 -6.5349 28 6 5.9870 0.8521 1.9512 29 1 -1.0499 0.0000 0.0003 30 1 3.0089 1.0184 0.1433 31 1 3.0095 -0.3839 -0.9530 32 1 2.7936 -1.9053 0.9932 33 1 2.7929 -0.5028 2.0894 34 1 4.9874 -1.1776 0.2412 35 1 4.1965 -0.5192 3.7220 36 1 5.5008 -1.5660 4.3380 37 1 7.7505 -1.2053 3.9488 38 1 8.4084 0.3284 3.2799 39 1 6.5327 -2.7030 0.8778 40 1 6.9194 -2.9033 2.6043 41 1 6.4340 2.3484 -0.5181 42 1 5.0658 1.2447 -0.7979 43 1 6.6943 1.7770 -5.1852 44 1 6.3018 1.8955 1.9350 45 1 4.9336 0.7764 1.6811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108624178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:44 Heat of formation + Delta-G solvation = 29.436689 kcal Electronic energy + Delta-G solvation = -26223.350495 eV Core-core repulsion = 22754.578154 eV Total energy + Delta-G solvation = -3468.772341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25269 -39.45626 -37.25993 -34.94887 -34.72206 -33.77260 -32.40090 -31.31188 -30.16019 -28.44194 -27.05021 -26.51377 -23.80569 -23.10835 -22.73339 -20.72351 -20.26833 -19.75817 -18.89319 -18.17822 -17.42219 -16.88563 -16.61726 -16.15396 -16.09728 -15.80030 -15.63862 -15.25230 -14.77328 -14.53036 -14.36918 -14.19614 -13.89237 -13.82652 -13.64635 -13.48671 -13.41165 -13.09970 -12.96852 -12.82823 -12.73542 -12.53952 -12.29044 -11.96251 -11.64380 -11.48386 -11.28937 -11.11825 -11.09133 -11.07869 -10.97256 -10.79758 -10.27467 -9.44791 -8.90293 -8.88250 -8.81748 -6.23886 1.26163 1.51539 1.59319 1.67462 1.79642 1.84060 1.88508 2.24119 2.35713 3.01119 3.04242 3.16690 3.51482 3.65000 3.69266 3.82509 3.93488 4.06655 4.12690 4.19373 4.19607 4.28168 4.32814 4.39045 4.43037 4.52780 4.55578 4.72742 4.79901 4.90970 4.92321 5.00349 5.00988 5.07686 5.14633 5.16781 5.23329 5.31405 5.38307 5.54397 5.66283 5.71249 6.05403 6.17126 6.17275 6.65884 6.68104 7.08813 7.26882 8.53176 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.004564 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.748280 B = 6133.187515 C = 7701.391135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.219 4.219 3 C -0.015 4.015 4 C 0.070 3.930 5 N -0.675 5.675 6 C 0.088 3.912 7 H 0.055 0.945 8 C -0.095 4.095 9 C -0.083 4.083 10 H 0.117 0.883 11 C -0.118 4.118 12 C 0.124 3.876 13 H 0.069 0.931 14 C -0.127 4.127 15 N -0.579 5.579 16 C 0.548 3.452 17 O -0.583 6.583 18 C -0.092 4.092 19 S -0.194 6.194 20 C -0.609 4.609 21 H 0.071 0.929 22 C -0.017 4.017 23 N -0.914 5.914 24 Si 1.133 2.867 25 H -0.264 1.264 26 H -0.264 1.264 27 H -0.279 1.279 28 C 0.086 3.914 29 H 0.248 0.752 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.094 0.906 34 H 0.329 0.671 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.260 0.740 44 H 0.036 0.964 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 -7.258 25.677 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.219 4.219 3 C -0.052 4.052 4 C -0.059 4.059 5 N -0.306 5.306 6 C -0.021 4.021 7 H 0.073 0.927 8 C -0.132 4.132 9 C -0.102 4.102 10 H 0.135 0.865 11 C -0.156 4.156 12 C 0.021 3.979 13 H 0.087 0.913 14 C -0.165 4.165 15 N -0.311 5.311 16 C 0.335 3.665 17 O -0.464 6.464 18 C -0.243 4.243 19 S 0.033 5.967 20 C -0.757 4.757 21 H 0.089 0.911 22 C -0.220 4.220 23 N -0.550 5.550 24 Si 0.951 3.049 25 H -0.188 1.188 26 H -0.189 1.189 27 H -0.204 1.204 28 C -0.035 4.035 29 H 0.264 0.736 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.406 -6.856 23.718 25.507 hybrid contribution -0.288 -1.027 0.756 1.307 sum -6.694 -7.883 24.474 26.569 Atomic orbital electron populations 1.25697 0.96782 0.99764 0.99490 1.23356 0.95088 1.01683 1.01800 1.18642 0.84925 1.02057 0.99535 1.21904 0.88074 0.97372 0.98512 1.61587 1.06219 1.55000 1.07842 1.21587 0.94166 0.94068 0.92241 0.92740 1.21777 0.99742 0.96420 0.95298 1.22732 0.94177 0.97649 0.95632 0.86456 1.23241 0.97570 1.01140 0.93674 1.22313 0.94862 0.88218 0.92526 0.91291 1.22261 0.95316 0.97288 1.01669 1.48295 1.45387 1.32776 1.04682 1.19454 0.81128 0.84279 0.81596 1.90674 1.42268 1.50167 1.63295 1.23105 1.03884 1.00207 0.97111 1.84993 1.63741 1.44267 1.03728 1.23993 1.33667 1.18532 0.99499 0.91112 1.27742 0.98406 1.04010 0.91855 1.70911 1.26772 1.20564 1.36709 0.82769 0.74420 0.71507 0.76248 1.18843 1.18938 1.20438 1.22897 1.00079 0.91987 0.88584 0.73565 0.89304 0.91741 0.95097 0.88742 0.85224 0.90612 0.88998 0.87348 0.91161 0.94289 0.87606 0.89074 0.87398 0.92908 0.94538 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.27 19.25 74.32 1.43 -2.84 16 2 C -0.22 -5.54 13.34 31.13 0.42 -5.12 16 3 C -0.01 -0.36 5.74 28.79 0.17 -0.20 16 4 C 0.07 1.34 5.09 86.30 0.44 1.78 16 5 N -0.67 -13.75 1.46 -491.54 -0.72 -14.47 16 6 C 0.09 1.36 2.79 44.92 0.13 1.48 16 7 H 0.05 0.78 7.80 -2.39 -0.02 0.76 16 8 C -0.09 -0.97 5.30 30.93 0.16 -0.80 16 9 C -0.08 -1.04 4.31 -8.64 -0.04 -1.08 16 10 H 0.12 1.03 8.14 -2.38 -0.02 1.02 16 11 C -0.12 -1.63 6.27 32.59 0.20 -1.43 16 12 C 0.12 2.74 3.93 45.79 0.18 2.92 16 13 H 0.07 1.87 8.02 -2.39 -0.02 1.85 16 14 C -0.13 -2.30 5.23 30.89 0.16 -2.14 16 15 N -0.58 -15.90 1.72 -784.26 -1.35 -17.25 16 16 C 0.55 21.31 6.48 87.66 0.57 21.88 16 17 O -0.58 -28.04 16.12 -3.05 -0.05 -28.09 16 18 C -0.09 -3.87 5.36 71.23 0.38 -3.48 16 19 S -0.19 -10.96 19.60 -56.49 -1.11 -12.07 16 20 C -0.61 -35.89 9.50 67.96 0.65 -35.25 16 21 H 0.07 3.94 7.80 -2.91 -0.02 3.92 16 22 C -0.02 -1.01 5.49 84.86 0.47 -0.54 16 23 N -0.91 -59.08 13.67 21.65 0.30 -58.78 16 24 Si 1.13 50.46 29.92 68.60 2.05 52.51 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 C 0.09 1.78 5.13 86.84 0.45 2.23 16 29 H 0.25 3.14 7.80 -4.42 -0.03 3.10 16 30 H 0.09 2.28 7.70 -2.39 -0.02 2.27 16 31 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.03 0.60 8.05 -2.39 -0.02 0.58 16 33 H 0.09 1.48 7.27 -2.39 -0.02 1.47 16 34 H 0.33 9.01 6.65 -89.69 -0.60 8.41 16 35 H 0.08 0.72 7.26 -2.39 -0.02 0.70 16 36 H 0.09 0.58 8.01 -2.39 -0.02 0.56 16 37 H 0.11 0.93 7.81 -2.39 -0.02 0.91 16 38 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.04 0.94 8.02 -2.39 -0.02 0.92 16 40 H 0.11 1.31 8.03 -2.39 -0.02 1.29 16 41 H 0.09 3.71 8.14 -2.40 -0.02 3.69 16 42 H 0.11 4.18 7.47 -2.39 -0.02 4.16 16 43 H 0.26 17.50 7.12 -92.71 -0.66 16.84 16 44 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.13 2.65 5.03 -6.95 -0.03 2.61 16 Total: -1.00 -79.14 367.58 5.35 -73.79 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.47 Total: 26.96 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 5.76 Total: -22.60 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -1.77 Total: -90.50 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 2.05 Total: 52.51 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -1.11 Total: -12.07 kcal Total: -79.14 5.35 -73.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108624178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.225 kcal (2) G-P(sol) polarization free energy of solvation -79.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds