Wall clock time and date at job start Tue Mar 31 2020 14:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47208 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.47195 * 179.97438 * 137.50193 * 3 2 1 5 5 N 1.46897 * 109.47591 * 319.13237 * 4 3 2 6 6 C 1.46894 * 111.00223 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.32375 * 34.64671 * 6 5 4 8 8 C 1.53039 * 109.17931 * 154.19911 * 6 5 4 9 9 C 1.53967 * 108.82247 * 175.58902 * 8 6 5 10 10 H 1.08999 * 112.99265 * 168.09231 * 9 8 6 11 11 C 1.55423 * 106.41908 * 293.81896 * 9 8 6 12 12 C 1.55169 * 100.35573 * 73.38026 * 11 9 8 13 13 H 1.08999 * 113.05554 * 162.99329 * 12 11 9 14 14 C 1.52982 * 109.32741 * 274.99841 * 6 5 4 15 15 N 1.47798 * 104.25203 * 40.55305 * 12 11 9 16 16 C 1.34776 * 125.85448 * 153.53046 * 15 12 11 17 17 O 1.21280 * 120.00179 * 0.02562 * 16 15 12 18 18 C 1.50701 * 119.99720 * 180.02562 * 16 15 12 19 19 S 1.80995 * 109.47163 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99933 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00353 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99705 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99774 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 60.00133 * 24 22 20 27 27 H 1.48500 * 109.47454 * 300.00126 * 24 22 20 28 28 C 1.47086 * 108.28387 * 333.79817 * 15 12 11 29 29 H 1.09003 * 109.46849 * 83.36217 * 1 2 3 30 30 H 1.08997 * 109.46991 * 203.36209 * 1 2 3 31 31 H 1.08994 * 109.46802 * 323.36802 * 1 2 3 32 32 H 1.08994 * 109.47172 * 199.12875 * 4 3 2 33 33 H 1.09008 * 109.47310 * 79.13118 * 4 3 2 34 34 H 1.00911 * 111.00020 * 56.04517 * 5 4 3 35 35 H 1.08992 * 109.57973 * 295.39096 * 8 6 5 36 36 H 1.09004 * 109.57294 * 55.65744 * 8 6 5 37 37 H 1.09004 * 111.23361 * 315.60459 * 11 9 8 38 38 H 1.09001 * 111.23767 * 191.15894 * 11 9 8 39 39 H 1.09006 * 109.53055 * 64.93645 * 14 6 5 40 40 H 1.08997 * 109.53787 * 304.70640 * 14 6 5 41 41 H 1.08995 * 109.47138 * 59.99991 * 18 16 15 42 42 H 1.08998 * 109.47102 * 300.00238 * 18 16 15 43 43 H 0.97001 * 120.00200 * 359.97438 * 23 22 20 44 44 H 1.08996 * 109.97721 * 120.20318 * 28 15 12 45 45 H 1.08997 * 109.97281 * 241.48552 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0017 -0.0004 5 7 4.6089 -1.0453 0.9056 6 6 6.0773 -1.0741 0.9303 7 1 6.4599 -0.0589 0.8249 8 6 6.5464 -1.6559 2.2658 9 6 8.0803 -1.7858 2.2397 10 1 8.5065 -1.9965 3.2205 11 6 8.4122 -2.8585 1.1652 12 6 8.1169 -2.0567 -0.1300 13 1 8.5555 -2.5072 -1.0204 14 6 6.5865 -1.9301 -0.2309 15 7 8.6572 -0.7089 0.1453 16 6 9.0937 0.1704 -0.7782 17 8 9.0618 -0.1203 -1.9552 18 6 9.6215 1.5149 -0.3482 19 16 10.1253 2.4601 -1.8073 20 6 10.6835 3.9417 -1.0342 21 1 10.6429 4.0385 0.0407 22 6 11.1765 4.9843 -1.8067 23 7 11.2264 4.8662 -3.1167 24 14 11.7676 6.5554 -0.9872 25 1 12.2432 7.5059 -2.0243 26 1 12.8818 6.2398 -0.0575 27 1 10.6485 7.1692 -0.2283 28 6 8.6428 -0.4943 1.6003 29 1 -0.3633 0.1188 -1.0208 30 1 -0.3633 -0.9434 0.4075 31 1 -0.3633 0.8247 0.6132 32 1 4.4807 0.9728 0.3362 33 1 4.4812 -0.1918 -1.0098 34 1 4.2340 -1.9474 0.6526 35 1 6.2498 -0.9921 3.0777 36 1 6.0972 -2.6379 2.4142 37 1 7.7536 -3.7226 1.2534 38 1 9.4596 -3.1564 1.2149 39 1 6.3216 -1.4566 -1.1763 40 1 6.1348 -2.9207 -0.1790 41 1 10.4799 1.3751 0.3087 42 1 8.8410 2.0581 0.1845 43 1 10.9191 4.0505 -3.5423 44 1 9.6551 -0.3088 1.9594 45 1 7.9996 0.3507 1.8457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108624765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:48 Heat of formation + Delta-G solvation = 11.483665 kcal Electronic energy + Delta-G solvation = -24804.982783 eV Core-core repulsion = 21335.431941 eV Total energy + Delta-G solvation = -3469.550842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25003 -38.30694 -36.59399 -34.18897 -32.74696 -32.53544 -31.52293 -30.45280 -28.78234 -28.01976 -25.90213 -24.88641 -24.84562 -22.23734 -21.93096 -19.90520 -19.15292 -18.27922 -17.34159 -16.80823 -16.43163 -15.47771 -15.39344 -14.94913 -14.83969 -14.33773 -14.14146 -13.96912 -13.85170 -13.81447 -13.73693 -13.50247 -12.99996 -12.91903 -12.78517 -12.60419 -12.43926 -12.32532 -12.26405 -11.91860 -11.76439 -11.41994 -11.05047 -10.92506 -10.60850 -10.53776 -10.17980 -10.08349 -9.98925 -9.58909 -9.50278 -9.02266 -8.75753 -8.52804 -8.23492 -6.68671 -6.63002 -4.01051 2.41463 2.54800 2.77648 2.94673 3.32275 3.37351 3.44674 3.57468 3.81924 4.13653 4.17850 4.23084 4.30565 4.59951 4.75345 4.78499 4.91898 4.94104 5.02630 5.14243 5.20780 5.21587 5.23787 5.29939 5.32286 5.33006 5.37815 5.39493 5.45091 5.53551 5.54466 5.60611 5.67126 5.72646 5.80858 5.86911 5.91205 5.93673 6.00506 6.01962 6.37628 6.68253 7.04971 7.46777 7.60504 7.90956 8.44930 8.49175 9.26234 10.80906 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.003221 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.356620 B = 8690.679215 C =10270.639324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.185 4.185 3 C -0.181 4.181 4 C 0.170 3.830 5 N -0.679 5.679 6 C 0.086 3.914 7 H 0.086 0.914 8 C -0.100 4.100 9 C -0.100 4.100 10 H 0.105 0.895 11 C -0.127 4.127 12 C 0.140 3.860 13 H 0.099 0.901 14 C -0.159 4.159 15 N -0.620 5.620 16 C 0.547 3.453 17 O -0.517 6.517 18 C -0.124 4.124 19 S -0.117 6.117 20 C -0.607 4.607 21 H 0.065 0.935 22 C 0.035 3.965 23 N -0.884 5.884 24 Si 1.084 2.916 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.101 3.899 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.342 0.658 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.278 0.722 44 H 0.068 0.932 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 -16.429 13.139 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.187 4.187 3 C -0.182 4.182 4 C 0.042 3.958 5 N -0.309 5.309 6 C -0.024 4.024 7 H 0.104 0.896 8 C -0.138 4.138 9 C -0.119 4.119 10 H 0.123 0.877 11 C -0.165 4.165 12 C 0.036 3.964 13 H 0.117 0.883 14 C -0.199 4.199 15 N -0.358 5.358 16 C 0.336 3.664 17 O -0.391 6.391 18 C -0.275 4.275 19 S 0.109 5.891 20 C -0.755 4.755 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.518 5.518 24 Si 0.910 3.090 25 H -0.203 1.203 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.022 4.022 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.160 0.840 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.083 -14.878 11.553 23.520 hybrid contribution -0.424 -1.415 0.980 1.773 sum -14.507 -16.294 12.533 25.160 Atomic orbital electron populations 1.18849 0.84657 1.02993 1.02978 1.22405 0.93890 1.00671 1.01688 1.22137 0.93327 1.01772 1.00917 1.18838 0.84163 0.97078 0.95706 1.60635 1.07723 1.08805 1.53735 1.21709 0.86063 1.00475 0.94153 0.89562 1.21757 0.93502 1.01682 0.96865 1.22653 0.95989 0.94316 0.98937 0.87727 1.23047 1.02288 0.97316 0.93884 1.22093 0.92573 0.83192 0.98552 0.88316 1.22827 0.96563 1.00715 0.99836 1.48683 1.64512 1.15994 1.06570 1.19990 0.76501 0.84988 0.84931 1.90705 1.54182 1.77468 1.16778 1.23291 1.03529 0.95303 1.05392 1.84814 1.82053 1.14875 1.07329 1.23687 1.52902 1.02095 0.96778 0.91639 1.26057 0.94147 1.02055 0.95259 1.70798 1.41902 1.29872 1.09225 0.83335 0.76406 0.74239 0.75055 1.20265 1.21124 1.21110 1.22186 1.01303 0.98190 0.80515 0.90288 0.90201 0.90213 0.88635 0.92548 0.84013 0.90856 0.91335 0.89710 0.90605 0.91476 0.90932 0.89078 0.89198 0.90997 0.91317 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.27 10.32 34.37 0.35 0.09 16 2 C -0.19 -2.05 14.13 -37.12 -0.52 -2.57 16 3 C -0.18 -2.19 13.60 -37.13 -0.50 -2.69 16 4 C 0.17 1.91 5.96 -6.61 -0.04 1.87 16 5 N -0.68 -6.75 6.20 -109.80 -0.68 -7.43 16 6 C 0.09 0.84 2.09 -67.70 -0.14 0.70 16 7 H 0.09 1.04 5.63 -51.93 -0.29 0.75 16 8 C -0.10 -0.79 5.09 -26.21 -0.13 -0.92 16 9 C -0.10 -0.76 4.32 -87.94 -0.38 -1.14 16 10 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 11 C -0.13 -1.02 6.18 -24.30 -0.15 -1.17 16 12 C 0.14 1.60 3.99 -65.61 -0.26 1.34 16 13 H 0.10 1.27 8.01 -51.93 -0.42 0.86 16 14 C -0.16 -1.64 4.96 -26.28 -0.13 -1.77 16 15 N -0.62 -8.60 2.35 -161.81 -0.38 -8.98 16 16 C 0.55 10.42 7.88 -10.99 -0.09 10.33 16 17 O -0.52 -11.83 16.11 5.56 0.09 -11.74 16 18 C -0.12 -2.56 5.36 36.01 0.19 -2.37 16 19 S -0.12 -3.18 19.60 -107.50 -2.11 -5.29 16 20 C -0.61 -17.58 9.50 30.94 0.29 -17.29 16 21 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 22 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 23 N -0.88 -27.67 13.67 55.49 0.76 -26.91 16 24 Si 1.08 25.04 29.92 -169.99 -5.09 19.95 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 C 0.10 1.07 5.24 -2.83 -0.01 1.05 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 1.11 8.05 -51.93 -0.42 0.70 16 33 H 0.06 0.65 7.52 -51.92 -0.39 0.26 16 34 H 0.34 3.07 8.39 -39.29 -0.33 2.74 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.48 7.98 -51.93 -0.41 0.07 16 37 H 0.08 0.54 7.75 -51.93 -0.40 0.14 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.85 7.57 -51.93 -0.39 0.45 16 40 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 41 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 42 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.28 8.88 7.12 -40.82 -0.29 8.59 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.76 6.80 -51.93 -0.35 0.40 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -35.35 377.09 -10.47 -45.81 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.12 Total: 2.50 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -1.62 Total: -13.60 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.30 Total: -43.32 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.09 Total: 19.95 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.11 Total: -5.29 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.35 -10.47 -45.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108624765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.297 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds