Wall clock time and date at job start Tue Mar 31 2020 14:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47208 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.47195 * 179.97438 * 137.50193 * 3 2 1 5 5 N 1.46897 * 109.47591 * 319.13237 * 4 3 2 6 6 C 1.46894 * 111.00223 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.32375 * 34.64671 * 6 5 4 8 8 C 1.53039 * 109.17931 * 154.19911 * 6 5 4 9 9 C 1.53967 * 108.82247 * 175.58902 * 8 6 5 10 10 H 1.08999 * 112.99265 * 168.09231 * 9 8 6 11 11 C 1.55423 * 106.41908 * 293.81896 * 9 8 6 12 12 C 1.55169 * 100.35573 * 73.38026 * 11 9 8 13 13 H 1.08999 * 113.05554 * 162.99329 * 12 11 9 14 14 C 1.52982 * 109.32741 * 274.99841 * 6 5 4 15 15 N 1.47798 * 104.25203 * 40.55305 * 12 11 9 16 16 C 1.34776 * 125.85448 * 153.53046 * 15 12 11 17 17 O 1.21280 * 120.00179 * 0.02562 * 16 15 12 18 18 C 1.50701 * 119.99720 * 180.02562 * 16 15 12 19 19 S 1.80995 * 109.47163 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99933 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00353 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99705 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99774 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 60.00133 * 24 22 20 27 27 H 1.48500 * 109.47454 * 300.00126 * 24 22 20 28 28 C 1.47086 * 108.28387 * 333.79817 * 15 12 11 29 29 H 1.09003 * 109.46849 * 83.36217 * 1 2 3 30 30 H 1.08997 * 109.46991 * 203.36209 * 1 2 3 31 31 H 1.08994 * 109.46802 * 323.36802 * 1 2 3 32 32 H 1.08994 * 109.47172 * 199.12875 * 4 3 2 33 33 H 1.09008 * 109.47310 * 79.13118 * 4 3 2 34 34 H 1.00911 * 111.00020 * 56.04517 * 5 4 3 35 35 H 1.08992 * 109.57973 * 295.39096 * 8 6 5 36 36 H 1.09004 * 109.57294 * 55.65744 * 8 6 5 37 37 H 1.09004 * 111.23361 * 315.60459 * 11 9 8 38 38 H 1.09001 * 111.23767 * 191.15894 * 11 9 8 39 39 H 1.09006 * 109.53055 * 64.93645 * 14 6 5 40 40 H 1.08997 * 109.53787 * 304.70640 * 14 6 5 41 41 H 1.08995 * 109.47138 * 59.99991 * 18 16 15 42 42 H 1.08998 * 109.47102 * 300.00238 * 18 16 15 43 43 H 0.97001 * 120.00200 * 359.97438 * 23 22 20 44 44 H 1.08996 * 109.97721 * 120.20318 * 28 15 12 45 45 H 1.08997 * 109.97281 * 241.48552 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0017 -0.0004 5 7 4.6089 -1.0453 0.9056 6 6 6.0773 -1.0741 0.9303 7 1 6.4599 -0.0589 0.8249 8 6 6.5464 -1.6559 2.2658 9 6 8.0803 -1.7858 2.2397 10 1 8.5065 -1.9965 3.2205 11 6 8.4122 -2.8585 1.1652 12 6 8.1169 -2.0567 -0.1300 13 1 8.5555 -2.5072 -1.0204 14 6 6.5865 -1.9301 -0.2309 15 7 8.6572 -0.7089 0.1453 16 6 9.0937 0.1704 -0.7782 17 8 9.0618 -0.1203 -1.9552 18 6 9.6215 1.5149 -0.3482 19 16 10.1253 2.4601 -1.8073 20 6 10.6835 3.9417 -1.0342 21 1 10.6429 4.0385 0.0407 22 6 11.1765 4.9843 -1.8067 23 7 11.2264 4.8662 -3.1167 24 14 11.7676 6.5554 -0.9872 25 1 12.2432 7.5059 -2.0243 26 1 12.8818 6.2398 -0.0575 27 1 10.6485 7.1692 -0.2283 28 6 8.6428 -0.4943 1.6003 29 1 -0.3633 0.1188 -1.0208 30 1 -0.3633 -0.9434 0.4075 31 1 -0.3633 0.8247 0.6132 32 1 4.4807 0.9728 0.3362 33 1 4.4812 -0.1918 -1.0098 34 1 4.2340 -1.9474 0.6526 35 1 6.2498 -0.9921 3.0777 36 1 6.0972 -2.6379 2.4142 37 1 7.7536 -3.7226 1.2534 38 1 9.4596 -3.1564 1.2149 39 1 6.3216 -1.4566 -1.1763 40 1 6.1348 -2.9207 -0.1790 41 1 10.4799 1.3751 0.3087 42 1 8.8410 2.0581 0.1845 43 1 10.9191 4.0505 -3.5423 44 1 9.6551 -0.3088 1.9594 45 1 7.9996 0.3507 1.8457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108624765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:48 Heat of formation + Delta-G solvation = -11.461722 kcal Electronic energy + Delta-G solvation = -24805.977770 eV Core-core repulsion = 21335.431941 eV Total energy + Delta-G solvation = -3470.545829 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.21516 -39.69387 -37.51882 -35.05805 -34.78233 -33.80828 -32.43012 -31.37138 -30.14697 -28.74361 -27.14091 -26.77864 -25.70651 -23.33128 -22.71734 -20.83604 -20.53963 -20.03549 -18.48665 -17.82737 -17.51524 -16.99800 -16.36716 -16.30094 -15.93209 -15.80089 -15.61966 -15.05049 -14.87746 -14.66312 -14.57069 -14.37811 -14.25191 -14.13847 -13.95726 -13.76705 -13.64353 -13.52246 -13.42809 -13.09183 -12.88578 -12.75903 -12.24351 -11.97177 -11.78399 -11.58534 -11.34644 -11.29937 -11.12494 -11.06323 -10.86995 -10.80467 -10.37352 -9.81170 -9.50440 -8.95998 -8.92494 -6.31830 1.11074 1.43337 1.49451 1.55930 1.58790 1.67280 1.79061 1.97049 2.31315 2.99246 3.00961 3.05745 3.35868 3.41282 3.44859 3.75400 3.85041 3.94388 3.98628 4.06798 4.09188 4.23931 4.28394 4.29254 4.35857 4.52151 4.57307 4.61615 4.65794 4.72595 4.77526 4.80009 4.81261 4.89998 4.98216 5.03955 5.14659 5.21712 5.26588 5.29300 5.38681 5.60292 5.84049 6.11073 6.28509 6.32537 6.61603 6.99763 7.03192 8.47389 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.003221 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.356620 B = 8690.679215 C =10270.639324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.179 4.179 3 C -0.225 4.225 4 C 0.174 3.826 5 N -0.672 5.672 6 C 0.089 3.911 7 H 0.059 0.941 8 C -0.093 4.093 9 C -0.082 4.082 10 H 0.139 0.861 11 C -0.114 4.114 12 C 0.127 3.873 13 H 0.078 0.922 14 C -0.152 4.152 15 N -0.608 5.608 16 C 0.545 3.455 17 O -0.569 6.569 18 C -0.099 4.099 19 S -0.195 6.195 20 C -0.613 4.613 21 H 0.074 0.926 22 C -0.019 4.019 23 N -0.912 5.912 24 Si 1.137 2.863 25 H -0.279 1.279 26 H -0.262 1.262 27 H -0.263 1.263 28 C 0.087 3.913 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.349 0.651 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.032 0.968 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.260 0.740 44 H 0.078 0.922 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.717 -17.765 16.951 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.180 4.180 3 C -0.226 4.226 4 C 0.046 3.954 5 N -0.302 5.302 6 C -0.021 4.021 7 H 0.077 0.923 8 C -0.131 4.131 9 C -0.101 4.101 10 H 0.157 0.843 11 C -0.152 4.152 12 C 0.023 3.977 13 H 0.096 0.904 14 C -0.191 4.191 15 N -0.342 5.342 16 C 0.333 3.667 17 O -0.448 6.448 18 C -0.250 4.250 19 S 0.031 5.969 20 C -0.760 4.760 21 H 0.093 0.907 22 C -0.222 4.222 23 N -0.548 5.548 24 Si 0.954 3.046 25 H -0.204 1.204 26 H -0.186 1.186 27 H -0.188 1.188 28 C -0.035 4.035 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.168 0.832 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.185 -16.275 15.430 27.084 hybrid contribution -0.219 -1.116 -0.164 1.149 sum -15.405 -17.391 15.265 27.799 Atomic orbital electron populations 1.19132 0.81886 1.04559 1.04294 1.23418 0.95171 0.99230 1.00224 1.22441 0.93979 1.03511 1.02633 1.18685 0.84384 0.97078 0.95218 1.60677 1.07696 1.08828 1.52983 1.21694 0.85928 0.99060 0.95388 0.92306 1.21737 0.93675 1.02661 0.95002 1.22716 0.95566 0.91901 0.99934 0.84297 1.23058 1.03405 0.97622 0.91092 1.22386 0.92972 0.82166 1.00146 0.90429 1.22771 0.95880 1.01978 0.98518 1.48640 1.62073 1.15974 1.07556 1.19679 0.76951 0.85147 0.84968 1.90680 1.56834 1.78347 1.18936 1.23143 1.04407 0.95533 1.01959 1.85053 1.82680 1.16441 1.12685 1.24010 1.52347 1.02432 0.97239 0.90736 1.27879 0.93548 1.05764 0.95006 1.70918 1.43916 1.29310 1.10616 0.82724 0.77275 0.70007 0.74595 1.20438 1.18635 1.18771 1.22570 1.02283 1.00429 0.78211 0.88935 0.88292 0.88817 0.89826 0.93944 0.83158 0.90522 0.89186 0.86813 0.90083 0.94944 0.88123 0.87487 0.87932 0.92923 0.90395 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.50 10.32 70.18 0.72 0.22 16 2 C -0.18 -3.83 14.13 31.13 0.44 -3.39 16 3 C -0.23 -5.52 13.60 31.12 0.42 -5.10 16 4 C 0.17 4.14 5.96 84.50 0.50 4.64 16 5 N -0.67 -12.86 6.20 -501.30 -3.11 -15.97 16 6 C 0.09 1.65 2.09 44.92 0.09 1.74 16 7 H 0.06 1.43 5.63 -2.39 -0.01 1.41 16 8 C -0.09 -1.12 5.09 30.93 0.16 -0.96 16 9 C -0.08 -0.91 4.32 -9.06 -0.04 -0.95 16 10 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 11 C -0.11 -1.40 6.18 32.17 0.20 -1.21 16 12 C 0.13 2.79 3.99 45.79 0.18 2.97 16 13 H 0.08 2.06 8.01 -2.39 -0.02 2.04 16 14 C -0.15 -3.03 4.96 30.89 0.15 -2.88 16 15 N -0.61 -16.72 2.35 -784.24 -1.85 -18.57 16 16 C 0.54 21.48 7.88 87.66 0.69 22.17 16 17 O -0.57 -27.70 16.11 -3.03 -0.05 -27.74 16 18 C -0.10 -4.17 5.36 71.24 0.38 -3.79 16 19 S -0.20 -11.11 19.60 -56.49 -1.11 -12.21 16 20 C -0.61 -36.05 9.50 67.95 0.65 -35.40 16 21 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 22 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 23 N -0.91 -58.91 13.67 21.65 0.30 -58.62 16 24 Si 1.14 49.85 29.92 68.60 2.05 51.90 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 26 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 28 C 0.09 1.64 5.24 86.85 0.45 2.09 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 33 H 0.04 1.09 7.52 -2.38 -0.02 1.07 16 34 H 0.35 5.78 8.39 -89.69 -0.75 5.03 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.79 7.98 -2.38 -0.02 0.77 16 37 H 0.11 0.85 7.75 -2.38 -0.02 0.83 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.03 0.87 7.57 -2.38 -0.02 0.85 16 40 H 0.10 1.44 7.90 -2.39 -0.02 1.43 16 41 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 42 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 43 H 0.26 17.48 7.12 -92.71 -0.66 16.82 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 1.40 6.80 -2.39 -0.02 1.39 16 Total: -1.00 -82.38 377.09 2.06 -80.32 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.35 Total: 21.36 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 5.48 Total: -20.47 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -4.66 Total: -93.15 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Atomic # 16 Polarization: -11.11 SS G_CDS: -1.11 Total: -12.21 kcal Total: -82.38 2.06 -80.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108624765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.860 kcal (2) G-P(sol) polarization free energy of solvation -82.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds