Wall clock time and date at job start Tue Mar 31 2020 14:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 199.49221 * 3 2 1 5 5 N 1.46898 * 109.47506 * 59.85172 * 4 3 2 6 6 C 1.46899 * 111.00322 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.17582 * 34.60536 * 6 5 4 8 8 C 1.53024 * 109.32788 * 275.04355 * 6 5 4 9 9 C 1.53968 * 108.83348 * 295.14615 * 8 6 5 10 10 H 1.08999 * 112.99740 * 168.09339 * 9 8 6 11 11 C 1.55430 * 107.19501 * 293.48032 * 9 8 6 12 12 C 1.55450 * 100.23437 * 73.48041 * 11 9 8 13 13 H 1.09009 * 113.04327 * 163.20657 * 12 11 9 14 14 C 1.52990 * 109.32226 * 154.15485 * 6 5 4 15 15 N 1.47784 * 104.12018 * 40.86453 * 12 11 9 16 16 C 1.34771 * 125.86280 * 153.44382 * 15 12 11 17 17 O 1.21289 * 119.99660 * 359.71143 * 16 15 12 18 18 C 1.50697 * 120.00488 * 179.71879 * 16 15 12 19 19 S 1.80997 * 109.47056 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99978 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00350 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00110 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99641 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00025 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47126 * 90.00035 * 24 22 20 26 26 H 1.48509 * 109.47220 * 330.00596 * 24 22 20 27 27 H 1.48495 * 109.47299 * 210.00414 * 24 22 20 28 28 C 1.47088 * 108.28454 * 333.18192 * 15 12 11 29 29 H 1.09000 * 109.46747 * 280.65691 * 1 2 3 30 30 H 1.09007 * 109.47177 * 40.65556 * 1 2 3 31 31 H 1.08997 * 109.47242 * 160.65621 * 1 2 3 32 32 H 1.08998 * 109.47699 * 299.84734 * 4 3 2 33 33 H 1.09000 * 109.46889 * 179.84676 * 4 3 2 34 34 H 1.00900 * 111.00224 * 303.95440 * 5 4 3 35 35 H 1.08999 * 109.57747 * 175.33450 * 8 6 5 36 36 H 1.09007 * 109.68442 * 55.01292 * 8 6 5 37 37 H 1.09000 * 111.23076 * 191.43609 * 11 9 8 38 38 H 1.08996 * 111.23996 * 315.87852 * 11 9 8 39 39 H 1.09005 * 109.53178 * 185.06272 * 14 6 5 40 40 H 1.09001 * 109.53756 * 305.21442 * 14 6 5 41 41 H 1.09002 * 109.47389 * 59.99900 * 18 16 15 42 42 H 1.09002 * 109.47087 * 299.99724 * 18 16 15 43 43 H 0.96997 * 119.99534 * 179.97438 * 23 22 20 44 44 H 1.09006 * 109.97984 * 120.72326 * 28 15 12 45 45 H 1.09003 * 109.97588 * 241.96306 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 7 4.6085 -0.6933 -1.1973 6 6 6.0770 -0.7112 -1.2313 7 1 6.4577 -0.7955 -0.2134 8 6 6.5850 0.5901 -1.8559 9 6 6.1317 0.6458 -3.3263 10 1 6.2749 1.6268 -3.7792 11 6 6.8769 -0.4910 -4.0802 12 6 6.1086 -1.7300 -3.5406 13 1 6.2627 -2.6240 -4.1451 14 6 6.5498 -1.9141 -2.0498 15 7 4.6955 -1.2979 -3.5219 16 6 3.6215 -2.1059 -3.6218 17 8 3.7726 -3.3030 -3.7449 18 6 2.2328 -1.5220 -3.5809 19 16 1.0145 -2.8513 -3.7382 20 6 -0.4745 -1.9124 -3.6608 21 1 -0.4310 -0.8393 -3.5468 22 6 -1.7035 -2.5521 -3.7451 23 7 -2.8158 -1.8506 -3.6878 24 14 -1.7789 -4.4081 -3.9414 25 1 -1.8182 -5.0465 -2.6012 26 1 -0.5777 -4.8772 -4.6780 27 1 -3.0005 -4.7764 -4.7012 28 6 4.6621 0.1646 -3.3690 29 1 -0.3633 0.1900 1.0100 30 1 -0.3634 0.7797 -0.6696 31 1 -0.3633 -0.9696 -0.3404 32 1 4.4817 -0.5093 0.8916 33 1 4.4804 1.0298 -0.0025 34 1 4.2339 -1.6286 -1.2514 35 1 7.6736 0.6176 -1.8079 36 1 6.1740 1.4422 -1.3144 37 1 6.7625 -0.3899 -5.1594 38 1 7.9292 -0.5277 -3.7987 39 1 7.6367 -1.9824 -2.0028 40 1 6.1096 -2.8257 -1.6458 41 1 2.1102 -0.8180 -4.4041 42 1 2.0846 -1.0031 -2.6339 43 1 -3.6746 -2.2975 -3.7471 44 1 4.1469 0.6160 -4.2170 45 1 4.1554 0.4306 -2.4413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108624766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:53 Heat of formation + Delta-G solvation = 52.319787 kcal Electronic energy + Delta-G solvation = -26375.820289 eV Core-core repulsion = 22908.040233 eV Total energy + Delta-G solvation = -3467.780055 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22036 -38.03481 -35.97466 -33.70442 -32.61553 -32.37804 -31.39682 -30.09376 -28.55757 -27.63390 -25.72159 -25.53450 -24.41013 -22.18453 -21.88049 -19.59734 -18.80191 -17.69249 -17.01959 -16.52945 -16.20271 -15.28587 -15.17159 -14.97593 -14.79817 -14.39449 -13.90457 -13.69140 -13.54457 -13.26247 -13.11234 -12.94394 -12.77907 -12.69589 -12.63928 -12.57201 -12.36670 -12.25450 -11.87843 -11.67922 -11.56211 -11.19598 -10.97273 -10.83289 -10.50581 -10.47358 -10.29727 -9.79991 -9.65055 -9.45273 -9.26018 -8.94462 -8.38001 -8.33450 -7.82684 -6.81717 -6.23713 -3.92640 2.83225 2.89004 3.00879 3.18664 3.34636 3.38596 3.55211 3.76899 4.14722 4.35284 4.38493 4.45675 4.54062 4.62414 4.83127 4.89854 4.98614 5.06037 5.15356 5.16010 5.29726 5.34174 5.36971 5.41085 5.49423 5.57556 5.67538 5.79196 5.83721 5.86767 5.93483 5.93916 6.00841 6.03080 6.04467 6.08697 6.19223 6.27618 6.45063 6.56156 6.78141 6.84972 7.18142 7.94104 7.95944 8.00189 8.48218 8.71495 9.23540 10.85370 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.004677 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.113061 B = 5985.926759 C = 7090.208829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.137 4.137 3 C -0.226 4.226 4 C 0.172 3.828 5 N -0.664 5.664 6 C 0.088 3.912 7 H 0.048 0.952 8 C -0.103 4.103 9 C -0.096 4.096 10 H 0.092 0.908 11 C -0.128 4.128 12 C 0.137 3.863 13 H 0.096 0.904 14 C -0.134 4.134 15 N -0.597 5.597 16 C 0.548 3.452 17 O -0.535 6.535 18 C -0.111 4.111 19 S -0.151 6.151 20 C -0.512 4.512 21 H 0.087 0.913 22 C 0.097 3.903 23 N -0.882 5.882 24 Si 0.853 3.147 25 H -0.269 1.269 26 H -0.236 1.236 27 H -0.276 1.276 28 C 0.092 3.908 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.351 0.649 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.269 0.731 44 H 0.038 0.962 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.036 7.548 6.284 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C -0.227 4.227 4 C 0.044 3.956 5 N -0.298 5.298 6 C -0.021 4.021 7 H 0.066 0.934 8 C -0.141 4.141 9 C -0.115 4.115 10 H 0.110 0.890 11 C -0.166 4.166 12 C 0.033 3.967 13 H 0.114 0.886 14 C -0.173 4.173 15 N -0.332 5.332 16 C 0.337 3.663 17 O -0.412 6.412 18 C -0.261 4.261 19 S 0.076 5.924 20 C -0.660 4.660 21 H 0.105 0.895 22 C -0.112 4.112 23 N -0.519 5.519 24 Si 0.678 3.322 25 H -0.194 1.194 26 H -0.160 1.160 27 H -0.201 1.201 28 C -0.031 4.031 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.172 0.828 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 19.933 6.274 5.709 21.663 hybrid contribution -0.348 0.041 0.723 0.803 sum 19.586 6.316 6.432 21.560 Atomic orbital electron populations 1.18992 0.84221 1.05078 1.02163 1.22633 0.93941 0.98839 0.98458 1.21784 0.93113 1.04042 1.03727 1.18796 0.84896 1.00085 0.91781 1.61594 1.07472 1.24239 1.36493 1.21493 0.87471 0.95510 0.97669 0.93433 1.21790 0.99737 0.96858 0.95693 1.22513 0.95467 0.98324 0.95204 0.88981 1.23052 0.98783 0.94687 1.00114 1.22636 0.81560 0.97645 0.94835 0.88590 1.22762 1.00927 0.97450 0.96133 1.48359 1.04319 1.08018 1.72520 1.19847 0.85175 0.85907 0.75405 1.90685 1.86111 1.14788 1.49607 1.23216 0.93887 1.03343 1.05692 1.84732 0.99468 1.11871 1.96356 1.22298 0.89797 0.96536 1.57334 0.89452 1.24667 0.94499 0.98528 0.93462 1.69938 0.97465 1.36028 1.48495 0.86784 0.79796 0.85684 0.79895 1.19384 1.15992 1.20139 1.22846 0.96604 0.79781 1.03891 0.90810 0.89838 0.88467 0.93509 0.89212 0.82785 0.91586 0.91459 0.90941 0.90313 0.90584 0.91458 0.89313 0.88243 0.92117 0.94347 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.76 10.32 34.37 0.35 -0.40 16 2 C -0.14 -2.23 14.06 -37.12 -0.52 -2.75 16 3 C -0.23 -3.35 13.49 -37.12 -0.50 -3.85 16 4 C 0.17 1.90 5.63 -6.61 -0.04 1.86 16 5 N -0.66 -7.60 1.43 -109.80 -0.16 -7.76 16 6 C 0.09 0.79 2.79 -67.71 -0.19 0.60 16 7 H 0.05 0.39 7.78 -51.93 -0.40 -0.02 16 8 C -0.10 -0.77 5.30 -26.21 -0.14 -0.90 16 9 C -0.10 -0.83 4.27 -87.93 -0.38 -1.21 16 10 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.13 -1.12 6.22 -24.14 -0.15 -1.27 16 12 C 0.14 1.60 4.12 -64.01 -0.26 1.34 16 13 H 0.10 1.26 8.01 -51.92 -0.42 0.84 16 14 C -0.13 -1.31 5.30 -24.82 -0.13 -1.44 16 15 N -0.60 -8.54 1.76 -160.02 -0.28 -8.82 16 16 C 0.55 10.44 6.58 -10.99 -0.07 10.37 16 17 O -0.54 -12.06 16.11 5.55 0.09 -11.97 16 18 C -0.11 -2.31 5.36 36.00 0.19 -2.12 16 19 S -0.15 -3.90 18.55 -107.50 -1.99 -5.89 16 20 C -0.51 -14.60 10.04 30.94 0.31 -14.29 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.19 13.97 55.49 0.78 -25.42 16 24 Si 0.85 21.90 27.74 -169.99 -4.71 17.18 16 25 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.24 -6.12 6.74 56.52 0.38 -5.74 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.09 1.10 5.08 -2.82 -0.01 1.09 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.05 0.47 8.05 -51.93 -0.42 0.06 16 33 H 0.09 0.83 7.36 -51.93 -0.38 0.45 16 34 H 0.35 5.03 6.66 -39.29 -0.26 4.77 16 35 H 0.07 0.40 8.01 -51.93 -0.42 -0.01 16 36 H 0.07 0.48 7.35 -51.93 -0.38 0.10 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.54 7.83 -51.93 -0.41 0.13 16 39 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 40 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 41 H 0.09 1.82 8.14 -51.91 -0.42 1.40 16 42 H 0.10 2.04 7.96 -51.92 -0.41 1.62 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.14 1.72 4.89 -61.63 -0.30 1.42 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -32.59 367.83 -9.54 -42.13 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.17 Total: 5.29 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.63 Total: -10.29 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.34 Total: -41.99 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -1.99 Total: -5.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.59 -9.54 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108624766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.448 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds