Wall clock time and date at job start Tue Mar 31 2020 14:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 199.49221 * 3 2 1 5 5 N 1.46898 * 109.47506 * 59.85172 * 4 3 2 6 6 C 1.46899 * 111.00322 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.17582 * 34.60536 * 6 5 4 8 8 C 1.53024 * 109.32788 * 275.04355 * 6 5 4 9 9 C 1.53968 * 108.83348 * 295.14615 * 8 6 5 10 10 H 1.08999 * 112.99740 * 168.09339 * 9 8 6 11 11 C 1.55430 * 107.19501 * 293.48032 * 9 8 6 12 12 C 1.55450 * 100.23437 * 73.48041 * 11 9 8 13 13 H 1.09009 * 113.04327 * 163.20657 * 12 11 9 14 14 C 1.52990 * 109.32226 * 154.15485 * 6 5 4 15 15 N 1.47784 * 104.12018 * 40.86453 * 12 11 9 16 16 C 1.34771 * 125.86280 * 153.44382 * 15 12 11 17 17 O 1.21289 * 119.99660 * 359.71143 * 16 15 12 18 18 C 1.50697 * 120.00488 * 179.71879 * 16 15 12 19 19 S 1.80997 * 109.47056 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99978 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00350 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00110 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99641 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00025 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47126 * 90.00035 * 24 22 20 26 26 H 1.48509 * 109.47220 * 330.00596 * 24 22 20 27 27 H 1.48495 * 109.47299 * 210.00414 * 24 22 20 28 28 C 1.47088 * 108.28454 * 333.18192 * 15 12 11 29 29 H 1.09000 * 109.46747 * 280.65691 * 1 2 3 30 30 H 1.09007 * 109.47177 * 40.65556 * 1 2 3 31 31 H 1.08997 * 109.47242 * 160.65621 * 1 2 3 32 32 H 1.08998 * 109.47699 * 299.84734 * 4 3 2 33 33 H 1.09000 * 109.46889 * 179.84676 * 4 3 2 34 34 H 1.00900 * 111.00224 * 303.95440 * 5 4 3 35 35 H 1.08999 * 109.57747 * 175.33450 * 8 6 5 36 36 H 1.09007 * 109.68442 * 55.01292 * 8 6 5 37 37 H 1.09000 * 111.23076 * 191.43609 * 11 9 8 38 38 H 1.08996 * 111.23996 * 315.87852 * 11 9 8 39 39 H 1.09005 * 109.53178 * 185.06272 * 14 6 5 40 40 H 1.09001 * 109.53756 * 305.21442 * 14 6 5 41 41 H 1.09002 * 109.47389 * 59.99900 * 18 16 15 42 42 H 1.09002 * 109.47087 * 299.99724 * 18 16 15 43 43 H 0.96997 * 119.99534 * 179.97438 * 23 22 20 44 44 H 1.09006 * 109.97984 * 120.72326 * 28 15 12 45 45 H 1.09003 * 109.97588 * 241.96306 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 7 4.6085 -0.6933 -1.1973 6 6 6.0770 -0.7112 -1.2313 7 1 6.4577 -0.7955 -0.2134 8 6 6.5850 0.5901 -1.8559 9 6 6.1317 0.6458 -3.3263 10 1 6.2749 1.6268 -3.7792 11 6 6.8769 -0.4910 -4.0802 12 6 6.1086 -1.7300 -3.5406 13 1 6.2627 -2.6240 -4.1451 14 6 6.5498 -1.9141 -2.0498 15 7 4.6955 -1.2979 -3.5219 16 6 3.6215 -2.1059 -3.6218 17 8 3.7726 -3.3030 -3.7449 18 6 2.2328 -1.5220 -3.5809 19 16 1.0145 -2.8513 -3.7382 20 6 -0.4745 -1.9124 -3.6608 21 1 -0.4310 -0.8393 -3.5468 22 6 -1.7035 -2.5521 -3.7451 23 7 -2.8158 -1.8506 -3.6878 24 14 -1.7789 -4.4081 -3.9414 25 1 -1.8182 -5.0465 -2.6012 26 1 -0.5777 -4.8772 -4.6780 27 1 -3.0005 -4.7764 -4.7012 28 6 4.6621 0.1646 -3.3690 29 1 -0.3633 0.1900 1.0100 30 1 -0.3634 0.7797 -0.6696 31 1 -0.3633 -0.9696 -0.3404 32 1 4.4817 -0.5093 0.8916 33 1 4.4804 1.0298 -0.0025 34 1 4.2339 -1.6286 -1.2514 35 1 7.6736 0.6176 -1.8079 36 1 6.1740 1.4422 -1.3144 37 1 6.7625 -0.3899 -5.1594 38 1 7.9292 -0.5277 -3.7987 39 1 7.6367 -1.9824 -2.0028 40 1 6.1096 -2.8257 -1.6458 41 1 2.1102 -0.8180 -4.4041 42 1 2.0846 -1.0031 -2.6339 43 1 -3.6746 -2.2975 -3.7471 44 1 4.1469 0.6160 -4.2170 45 1 4.1554 0.4306 -2.4413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108624766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:52 Heat of formation + Delta-G solvation = 34.079263 kcal Electronic energy + Delta-G solvation = -26376.611257 eV Core-core repulsion = 22908.040233 eV Total energy + Delta-G solvation = -3468.571024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.17437 -39.44687 -36.94127 -34.85764 -34.63310 -33.75812 -32.24414 -31.24357 -29.95569 -28.67927 -27.80170 -26.66109 -25.35710 -23.23806 -22.66397 -20.61608 -20.00519 -19.49752 -18.29207 -17.57719 -17.34251 -17.10737 -16.40950 -16.31586 -16.01145 -15.79420 -15.51216 -14.97474 -14.84883 -14.55080 -14.33483 -14.22695 -13.90887 -13.82686 -13.64404 -13.59394 -13.39171 -13.30983 -13.12687 -13.03957 -12.95844 -12.81792 -12.45660 -12.36899 -11.86676 -11.61955 -11.24901 -11.15547 -11.07733 -10.87209 -10.74626 -10.59828 -10.50145 -9.44727 -8.96997 -8.77801 -8.48684 -6.18104 0.99927 1.29275 1.46537 1.55618 1.65865 1.67476 1.79630 2.24309 2.28386 2.75284 2.89411 3.22138 3.44602 3.55377 3.73551 3.82262 3.94363 4.08641 4.20211 4.26924 4.34683 4.41525 4.46749 4.49735 4.52986 4.60122 4.73686 4.77318 4.78771 4.82378 4.86469 5.01312 5.01702 5.09818 5.13314 5.20038 5.23589 5.34161 5.41834 5.57505 5.74120 5.75406 6.05223 6.14424 6.17006 6.65270 6.73526 6.96933 7.25824 8.63553 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.004677 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.113061 B = 5985.926759 C = 7090.208829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.191 4.191 3 C -0.209 4.209 4 C 0.172 3.828 5 N -0.675 5.675 6 C 0.087 3.913 7 H 0.067 0.933 8 C -0.096 4.096 9 C -0.085 4.085 10 H 0.114 0.886 11 C -0.116 4.116 12 C 0.122 3.878 13 H 0.075 0.925 14 C -0.126 4.126 15 N -0.582 5.582 16 C 0.548 3.452 17 O -0.579 6.579 18 C -0.091 4.091 19 S -0.178 6.178 20 C -0.517 4.517 21 H 0.059 0.941 22 C 0.053 3.947 23 N -0.913 5.913 24 Si 0.907 3.093 25 H -0.263 1.263 26 H -0.242 1.242 27 H -0.259 1.259 28 C 0.081 3.919 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.331 0.669 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.041 0.959 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.276 0.724 44 H 0.026 0.974 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.683 8.680 7.043 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.192 4.192 3 C -0.209 4.209 4 C 0.045 3.955 5 N -0.307 5.307 6 C -0.022 4.022 7 H 0.085 0.915 8 C -0.133 4.133 9 C -0.104 4.104 10 H 0.132 0.868 11 C -0.154 4.154 12 C 0.019 3.981 13 H 0.093 0.907 14 C -0.165 4.165 15 N -0.314 5.314 16 C 0.336 3.664 17 O -0.460 6.460 18 C -0.242 4.242 19 S 0.049 5.951 20 C -0.665 4.665 21 H 0.078 0.922 22 C -0.152 4.152 23 N -0.551 5.551 24 Si 0.730 3.270 25 H -0.188 1.188 26 H -0.166 1.166 27 H -0.183 1.183 28 C -0.041 4.041 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 23.623 7.468 6.474 25.607 hybrid contribution -1.354 -0.190 0.506 1.458 sum 22.269 7.278 6.980 24.445 Atomic orbital electron populations 1.18864 0.84621 1.02843 1.03468 1.22975 0.94755 1.01094 1.00418 1.22739 0.94326 1.01891 1.01989 1.19057 0.82310 1.01799 0.92333 1.61645 1.09380 1.22845 1.36832 1.21658 0.85658 0.96071 0.98773 0.91479 1.21810 1.01501 0.95883 0.94148 1.22549 0.92128 0.99024 0.96670 0.86783 1.23055 1.00057 0.92491 0.99795 1.22964 0.79905 0.98570 0.96631 0.90658 1.22721 1.02687 0.96873 0.94199 1.48305 1.04542 1.08811 1.69693 1.19388 0.85385 0.85608 0.76013 1.90658 1.86554 1.16403 1.52348 1.23091 0.94112 1.01297 1.05679 1.84624 0.99769 1.14292 1.96449 1.22338 0.91426 0.95551 1.57189 0.92232 1.25406 0.94188 1.02472 0.93153 1.70005 0.98109 1.37780 1.49210 0.85974 0.80043 0.80851 0.80153 1.18797 1.16588 1.18300 1.23093 0.99803 0.78053 1.03173 0.88136 0.90570 0.91823 0.91850 0.86371 0.85065 0.88597 0.90415 0.91471 0.86947 0.87293 0.94051 0.89306 0.88160 0.91478 0.95548 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.40 10.32 70.18 0.72 -0.67 16 2 C -0.19 -6.43 14.06 31.13 0.44 -5.99 16 3 C -0.21 -6.10 13.49 31.13 0.42 -5.68 16 4 C 0.17 3.35 5.63 84.50 0.48 3.83 16 5 N -0.68 -14.10 1.43 -501.30 -0.72 -14.81 16 6 C 0.09 1.21 2.79 44.92 0.13 1.33 16 7 H 0.07 0.75 7.78 -2.39 -0.02 0.73 16 8 C -0.10 -0.88 5.30 30.93 0.16 -0.72 16 9 C -0.09 -1.10 4.27 -9.05 -0.04 -1.14 16 10 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 11 C -0.12 -1.56 6.22 32.27 0.20 -1.36 16 12 C 0.12 2.62 4.12 46.83 0.19 2.81 16 13 H 0.08 1.94 8.01 -2.38 -0.02 1.92 16 14 C -0.13 -2.10 5.30 31.83 0.17 -1.93 16 15 N -0.58 -16.27 1.76 -778.58 -1.37 -17.63 16 16 C 0.55 21.41 6.58 87.66 0.58 21.99 16 17 O -0.58 -26.96 16.11 -3.06 -0.05 -27.01 16 18 C -0.09 -3.94 5.36 71.23 0.38 -3.56 16 19 S -0.18 -9.53 18.55 -56.49 -1.05 -10.58 16 20 C -0.52 -30.80 10.04 67.96 0.68 -30.12 16 21 H 0.06 3.77 8.03 -2.91 -0.02 3.74 16 22 C 0.05 3.17 5.50 84.86 0.47 3.63 16 23 N -0.91 -55.57 13.97 21.65 0.30 -55.26 16 24 Si 0.91 45.98 27.74 68.60 1.90 47.88 16 25 H -0.26 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.24 -12.42 6.74 99.48 0.67 -11.75 16 27 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 28 C 0.08 1.80 5.08 86.85 0.44 2.24 16 29 H 0.10 2.64 8.14 -2.39 -0.02 2.63 16 30 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.06 1.08 8.05 -2.39 -0.02 1.06 16 33 H 0.12 1.69 7.36 -2.39 -0.02 1.67 16 34 H 0.33 9.33 6.66 -89.69 -0.60 8.74 16 35 H 0.10 0.45 8.01 -2.39 -0.02 0.43 16 36 H 0.08 0.64 7.35 -2.38 -0.02 0.63 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.11 0.85 7.83 -2.39 -0.02 0.84 16 39 H 0.11 1.13 8.04 -2.38 -0.02 1.11 16 40 H 0.04 0.92 8.01 -2.39 -0.02 0.90 16 41 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 42 H 0.10 4.31 7.96 -2.39 -0.02 4.29 16 43 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.13 3.12 4.89 -21.54 -0.11 3.01 16 Total: -1.00 -75.07 367.83 4.71 -70.36 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.26 Total: 22.38 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 5.42 Total: -15.32 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -1.78 Total: -87.71 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.01 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Atomic # 16 Polarization: -9.53 SS G_CDS: -1.05 Total: -10.58 kcal Total: -75.07 4.71 -70.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108624766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.438 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds